RNA id: XM_026911162.2


Basic Information

Item Value
RNA id XM_026911162.2
length 2676
RNA type mRNA
GC content 0.33
exon number 5
gene id pycard
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 658481 ~ 663976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAACGCATCTGTTGCAGGaaagaggaggagcaggagaggAGCAGGAGAGGAGTTTTACTCGCTGGAAAGGTTTTATTTCCGTCCTGAGCGTTTTCAGGGACGCGCCCCGCCATTCAGCCACCAGTAGACACACGGAAGTGTCGAGGTGACTGACGGTGAAATCGCCGGTGAGTCTGTCAGTGCTTCATCCGGGAACAGGAGGAAAAGCGCGCGCTcaggtttccttcaggttcaggttcaggttcaggttctgcAGATCCAGCTAGAACACAATGTCCGGGgaCATACGTTCTCCACTTCCGATGGATGAGGTGGATCAGTCGACAGCGTCACGACCGTGTgGTGCCGTCTTTATTGATCAGCATGTAGACATACTTATACAGAGAGCCTGCTGTGTGGAACCCGTACTGGACAAGCTCCTGAGTATGAGGGTCATCAACGATGAGGAGTACCAAGACATTAAAACGGAGAAAACACCTCAGAAACAAATGAGGGCTTTACTCATGGGGCCTATAAGATCCAGGGGTGATCAAGGAAAACAGCTTCTGTACGCTACTCTGAAGGCCCAGCAGCCGTTAATGATGGAGGACCTCAGCGcttaaagaatttatttacaatcGTTATGgttgtttttcttattatttgtgaACCTCGATACCATACATATACCTCAAATGTAGTCTGTCAGTAAGATAAATACAGACATAGCTGGAGAAAGTTACATTTATAAGAAGCatgtggtaaataaataaaaagcacggATCTGCCAGACTAACTAAacaaaatgtgtgatttgtgtTTAATCACAAATCCAGTCAATAAACTTATCTTATCAAACTTTAATCAAACTTCATGGCTAATACCAGCTTAGAATGTGAAGAACATTAGCTAAGAAACAGTTATTTGACTCTAACTCCGTGTGATATTAAAATCTGTAAGATAAACTGTGCTTTCTTGTACAGCCGTTGTCATCAggactcaaacacacatgctgacTGGGATTGTGAAAGAATTTGATGCAAAGAATTACATTCCAAATAAACCTTTCGTttattttgttgattatttaaaatttccAAAGGATGACAttccaattaattaatttgattaactgattattaaaaaattgaatccacagattaaaatttcattcatatTGGCGGTACTTGGGTTCTGAATGGTTATATTTGCACCTGTTAAATAGAAGAAGAATAATCATGCAACCTTTACATCTGTTTACTTTAAACCAAAATCAATTatgctaattttaaaaaaaataaatatgttttccaaatactgaaaatatctAACTTTCAAAAACAGACTGCAGAGTAACTCATGCGATGATCTCTGCTAAGAACAAACATGTGCTTAGACTccaatctctctcttttcctggtaacttacacacacacacacacacacacacacacacactccgccaGAGAGTGTCCTACTGACTGTGTATCGTAAAGTTCTTAGAAACCGGACGCTTGCATTCAGAAGATAAAGATCTTTTACTACATAAATGCAATGGCCTAAAATCTTATTGATGTTTAACGTCCAAACCATTCGGCCAATCAAAATTGGTTTTcgtattatgtaaaatataattacgTAACCATTAATCTAATCTTAAAAATTCTCTTAAAAAGCtaatttgtcttatttattacaAGACGTCAACGTCAGACACATTTTCCCCTCAATTAACGTTAGCTattaaagtacattttgttGGCAGGcaacaaattataaatttagTTAAACgtgtaaattataaaaaaaaaaaaaacataaacaataatattttttttgctataactaaactataaataattccagGAAATTAATTTTGACCCGACAATCTGAGCCCCTGAGCTAAACCCAGCGCTTTCAcactgttaatattattattattatattaataatattacatgAAATAGCTGAAATTGACTTTTATTTAAAGGTAAAACACGTCCTGGTGCAAAAGAACTGTGATTTCTGATGTAGCCTAGctgattttatacactttatacataGATCCGATGTTTTATCGCCaagattttcatattttaattggCAGAGGACAATCATTTGTTTTTGGatcaatgacaaaaataatttttaagaacatcaaatttaaaatgaattaatttcatGGCTTTATACAATGACTATTATGACATTTGCTCTATAAttgtaaagaattttatttttacttaggAATAGTGCAAAGAAATCATTTAATCTATgctatatatatttcatatcatacaaaaaaaaatacaaaaatgcaatgaaaaaaaaataataatgttataattagTATTTTTtctagattgttttttttataattgttagCAACTCCTCTGATTAAATCTGATTATCTGTGAGAAGTTCATGTAAAGACGCTGATTTTTGTTTTGcgtttattaatttaaattgtttataaaagaaattgtttgtaattttttttctaaaatatccAAAGTACAGGATCTATTTTAATCTGAAATACTGTTGGTAGATTGTATGACCATAAAaaccacatttatataaatttttttatttgtttgtttggtactttaaattcaaatgtacataaaataaGAAGTacgaaaaaataaacatatcaaTGTCCTTGAAATGAAACTATAGTTATGTGTTTGCT

Function

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0032090 Pyrin domain binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384002 lncRNA upstream 23436 606086 ~ 635045 (+) False G324123
TU384015 lncRNA upstream 23436 606086 ~ 635045 (+) False G324123
TU384065 lncRNA upstream 49779 607612 ~ 608702 (+) True G324161
TU384063 lncRNA upstream 50938 607045 ~ 607543 (+) True G324160
TU384004 lncRNA upstream 51567 606086 ~ 606914 (+) False G324123
TU384105 lncRNA downstream 49419 713395 ~ 713801 (+) True G324197
TU384127 lncRNA downstream 85475 749451 ~ 753443 (+) True G324216
TU384129 lncRNA downstream 85475 749451 ~ 753443 (+) False G324216
TU384216 lncRNA downstream 646935 1310911 ~ 1315115 (+) True G324284
TU384226 lncRNA downstream 665671 1329647 ~ 1330871 (+) True G324294
XM_026911136.2 mRNA upstream 1089 650918 ~ 657392 (+) True etsrp
XM_026911132.2 mRNA upstream 134324 505314 ~ 524157 (+) True zgc:162160
XM_034298297.1 mRNA upstream 175183 469956 ~ 483298 (+) True ppox
XM_034298298.1 mRNA upstream 175183 469975 ~ 483298 (+) False ppox
XM_034297821.1 mRNA upstream 191858 460213 ~ 466623 (+) True LOC113524801
XM_026911138.2 mRNA downstream 10892 674868 ~ 680370 (+) True LOC113524791
XM_034297823.1 mRNA downstream 55413 719389 ~ 745520 (+) True gramd1a
XM_034298115.1 mRNA downstream 110313 774289 ~ 782966 (+) False psmc4
XM_034298117.1 mRNA downstream 142665 806641 ~ 816145 (+) True si:dkey-199f5.8
XM_034297824.1 mRNA downstream 167869 831845 ~ 843562 (+) True cep85
TU384064 other upstream 48472 607612 ~ 610009 (+) False G324161
TU384003 other upstream 51567 606086 ~ 606914 (+) False G324123
TU384046 other upstream 100342 557415 ~ 558139 (+) True G324143
TU383992 other upstream 191856 454910 ~ 466625 (+) True G324120
TU384116 other downstream 81697 745673 ~ 748475 (+) True G324206
XR_004576966.1 other downstream 110313 774289 ~ 806528 (+) True psmc4
XR_004576993.1 other downstream 293149 957125 ~ 1010223 (+) False cpne4a
TU384187 other downstream 454292 1118268 ~ 1163614 (+) True G324258
TU385279 other downstream 1478530 2142506 ~ 2144511 (+) False bola1

Expression Profile