RNA id: XM_034298030.1


Basic Information

Item Value
RNA id XM_034298030.1
length 4206
RNA type mRNA
GC content 0.43
exon number 5
gene id cmtm6
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 934154 ~ 955393 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGGTCGCTCGTGTAGGATTTTTCCGAGCGTTCACTGATCTGTACACGCACGCGCCTTTACTTTCGCTTCCGGTTGTTTTGTAGTCTCGTGGCGTTGTTTTGTCTTCTTGGTTGTCGACCTTTTTGTTTAATCCGCGTTTATTTCCCGATCAGTTCCGCGGCTGAGCTTCATTTCCACGCCATGGAGCTGTGTGCTGGCTGGACCTGAAGCAGTGTGTTTACCGGGACTTatTTCCTGCAGCGATGGCCACCACAGAGCAGGTCTACAACGCCACCACCACAGCAGCACAAGACCACACAACACCACCGAGTCGATGGTTCATCGTACCGAATCGCAACCTGCACTTTATCAGATTTTTTGTAAAAATCGCAGAAGTGctcctgtcCTTCGTGGCGTTCGTCCTGGAGGAAGTGGTGAACACTTGCACTTCCTGCAGCGCTCTTTACTTCTTTGAGTTTGTGAGCTGCACGGCCTTCCTCttcacactcctcctcctcatcctcctctccaCACCACTGCACCAGAAAGTCGGCATCACCTGCTGGCCCAAACTGGATTTCGGATACTCAGCTCTGATCAGCGTGTTTTTAATCATCGCCTCCATCGCATTCGCAGCGAATAACAGCGGCTCAGGAGTGGAGAGGGCCACCGTGgCTTTCGGCTTCCTCGCCTCCTTCGCCTTCCTCACAGATGTGATCATCTTCTACAAGAAGGAAGGTTTCCCGTTTTCTGGCACGAATAAGGAGCCAGTGGTGTGTTCGCCTGAACCGATGCCCGAGATCGAGAAGCTAAACGTCAACGGTACCAACGGTACCAACTGATCCAGCCCTGATTCATATCCCACATCCACGCGATCATGAATTTCTGAGCTTAAACCCGTTCCGCTGCAGAACTGTACACCGTTTAATTTatgaagctttttattttatttttttttcccatgaaatTCACGCATCACAGATTTTACGCATTTAATTGCAccagtttgtaatatttatgatataaaaaaacGTGACTTTTCTTACGATTACCAAATTTCTGGAAGTAACATTTCAATGAATTTTTAggtagcattttttaaaaaatctttgtaACGAATTTATACAATATGTGCCTTTTAGTGTAAGTAATAATTCATATTTGAAAATCAGCAGCACAGAACGGTGAATGTGAACACTCCCGGTGATCTGCACTCTCCCCTCGAACACGCAGGAGGAAGCTTCCTATGCAGGCGCTATAGAAATAAAGACGTTCCTCCTGTTAGAGAAGCGTCACGTGTGTCCAATAATTCCATGTGTGAGAGGATGTGTGTGCAGAATTCctccactgacatttttcattcctttttatTCGGATCGCGTGTGAAGACGACGCGGCTTTGTCACGCTAACATcgatcattttaaaatttttaaaaagatgcttTTATCTTACAGTAGGCTTAATGTTAGCCAGGGGTTAAATCACACACTGTGtgcacacatcatcatcaccagggtgaatatttattaatctgACAGCGTGCACCAGCTTTACTtcactttaaaaacacacaggctCCTTAAGGGTGGCCGTTTGCTCCTAACTAAGCAAAACGAACGTGTTTCCAGGACGCTTTGTAGACTTTTAAAAACCTCCTCGCTAAACTGTGTTGCATGATGACGCTTTGAAATATCACGGCGCGTTCTGTAATGATGTTAGGCTTTAAAAAGTAGTGTGTACGATTTGAAAAGTGCATGTTTGGAGCTTTGTTTTTGAGCCGCTCTTCAAGCCGGACGTGAGAAGGAGGAGTTAGAGTTTTTCCTcgagtgtgtttgtgctgctgcTTGTACAGGAACCCGGAAATCAAACTGCCAGGACGGTGTGATGGAACAAACGCTGCTGTATATTTCCCGCGTCTTCTACGTACATGTGAGACACGAAGCCACAATTTCTGCAACTGCGACTTTCTCAATTCTATTCAAATTAAGCATACTGCTCTAAAGAAGCTTCgcatgattcctcggaccaatcctacGGCGCGTGTGGTCCGACGTTccttcagttccccgctcacagCTTTAGGTCCTACCTGCGATTATCTTCCGCCAgctaagaaaagagaaataaatcttTGGAagaaagtagcagagatcattggtgcGGGCATGTAACtcgtacagttagcttgctttgctaatctgctaatttgctggacaggccacacccacaacaCAAGAGAAGCTACAAGCACCTGGTGTGACTTTTTCACCTGCTAGTGTGAACAGGTTAACAGTTCTGTTTTCAGTGAATCAGATCATTTGATTCCGAGTCGACTCTTTTGGTGATGAAATGACTCTAAACCGGACaaagtttgcaatattttaacCACTGATTGTTCTTCTTCGCCTGATTATGACTGAAAAGGTTTCCTGAGCTCTTACTTTACCTTCTGTTTAACAGAATAACATCAGCTCTCGGCgttcacctaaaagagccgACTCGTTCACGGATGACAGACTGAAACCACAGAATCTTCTCAAAAGAGGTTTTTATTTGAAGGACACCATCAGCATAACATTAAGTACACACTTGCAGCGAGTGTATCGAGGAGCAGAACTTTTGTGTAGTAAAATGCTGAAACTCAGCAGTAAGAATAACTGCTGAAGCGAATTCCCTGCGGTTTATTTCCTCCGATTATCAGATACTAAGTTTCGCAGTAACCCAATTCGAACACGGCTGATCGGATATATTTTGGagattttaaatatgtttttgctTCTCTTCAGattttttgctctctttctcaAGTCCATGTGATGTCTGCTAAAGTAACAAGAAGGGAAGTTGATGAGGTTGTGTTAAAAACAGCACTGGAACTGagtccaaaaacacacagaggatgTTTAAATTCTCTAAAATGATAAACCGAAGGGCAAAAGTAGAAAAATCCTAAATTAAATAACAGATCTTGGCTTTGCGTTCACACAGCAAGTGATGAGTCGCGGGTGTGGCTCCAGGTTTGACagctgtgggcgtggcctgtactgtcgtgtgtgcgtgtgtgtgtatatatataaatccatatatatattgcaaatattttaaaatgtaggcTAATTTTGTACAAAAAGACTGTGCTGCTCAGTTTTCTCTCCGTGTTTggatggaggaggagaaagtGAAGTGCTGAGAATTGGCCGAACGTGGGATTAGTCAGAGGAACTGCATCAcggctaatttgcataaaattaacATCTCAATGTTTCTAAATGTTCTTCAACATTGCTAGCGTGAATGAGAATTTTTAAAGTCCAGGTGCGGAATATCACACTTTAATCAGTCTGATATCTGAGTGTCATTTTGCAAActttatttctgcataaatcTAATTATTATGAGTTTTTAACATGATTCAGGCACAACATGTTCGTGAGCCGTGATTCACGCAAGATCTTTCTAAATCTTCCTTTCCTGTGGTTCTGATTAGCATGTGTGAGTAAAACAGCTGGTCAGGAGTGTACAGATGTTTCTATTCCTTATAGATGTAGTTATAAGTAAAGCGCGTCCTTCCTCGTTCCCTCGATGTTGCAGAGGATTCAGTTACGTGTGATTCTGATGTAATTTAGTCACAGCTGTTTTTTATACTGAGTGAAAAGACATAGTGTAgtggacctgtgtgtgtgttggggtgtgtgttggggtgtgtgtgggtgtgtgtgtgttggggtgtgtgtgggtgtgttggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcatgggGCCAGCCGTTCGCTTGTTAAATGCCCGACCTCACAAACGGACTGCAATTCTGTCAAAATAAATATTCCGACTTGCACGAGCACCTTCCGATTTTTCCAGCAATTTCCACACTAGtgctaattaattattaaaatattccacatgattttaatataaacctaaatTACCATATTAAACTGTGCATAACAAGCTTAGATGACTCTGCTTTATTATTAACAATGCTGTttaacagtaacacacactttttatgatttattttcaccAGACACCAGCAATCCAACTCGTCCAACACACATGCATTAATTCCAGTTTAATCGTTAATCAGTGATTAATCATTGTCTTAACGTTTATTTCTCCTGTGTGAGTTTTAAACCTGTgtatgttttctgactttttaaagACAATCATTCAATAAAACAcgagggaacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384127 lncRNA upstream 182199 749451 ~ 753443 (+) True G324216
TU384129 lncRNA upstream 182199 749451 ~ 753443 (+) False G324216
TU384105 lncRNA upstream 221841 713395 ~ 713801 (+) True G324197
TU384065 lncRNA upstream 326940 607612 ~ 608702 (+) True G324161
TU384063 lncRNA upstream 328099 607045 ~ 607543 (+) True G324160
TU384216 lncRNA downstream 355518 1310911 ~ 1315115 (+) True G324284
TU384226 lncRNA downstream 374254 1329647 ~ 1330871 (+) True G324294
TU384239 lncRNA downstream 384135 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA downstream 385732 1341125 ~ 1342780 (+) True G324305
TU384269 lncRNA downstream 423153 1378546 ~ 1378940 (+) True G324328
XM_026911514.2 mRNA upstream 4777 923165 ~ 930865 (+) True cmtm7
XM_026911515.2 mRNA upstream 4777 923272 ~ 930865 (+) False cmtm7
XM_034298228.1 mRNA upstream 21392 908628 ~ 914250 (+) True LOC117595801
XM_026911498.2 mRNA upstream 28938 904463 ~ 906704 (+) False rpp25l
XM_026911517.2 mRNA downstream 1191 956584 ~ 1010223 (+) True cpne4a
XM_026911516.2 mRNA downstream 1732 957125 ~ 1010223 (+) False cpne4a
XM_034298039.1 mRNA downstream 148346 1103739 ~ 1124181 (+) False LOC113525078
XM_034298038.1 mRNA downstream 162869 1118262 ~ 1124181 (+) True LOC113525078
XM_034298040.1 mRNA downstream 182886 1138279 ~ 1166958 (+) True LOC117595784
XR_004576966.1 other upstream 129114 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 187167 745673 ~ 748475 (+) True G324206
TU384064 other upstream 325633 607612 ~ 610009 (+) False G324161
TU384003 other upstream 328728 606086 ~ 606914 (+) False G324123
TU384046 other upstream 377503 557415 ~ 558139 (+) True G324143
XR_004576993.1 other downstream 1732 957125 ~ 1010223 (+) False cpne4a
TU384187 other downstream 162875 1118268 ~ 1163614 (+) True G324258
TU385279 other downstream 1187113 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 1254829 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 1254829 2210222 ~ 2214261 (+) False LOC113533074

Expression Profile