RNA id: XR_004576952.1


Basic Information

Item Value
RNA id XR_004576952.1
length 1930
RNA type misc_RNA
GC content 0.51
exon number 17
gene id nek11
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1043313 ~ 1102117 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCTTTAAGCGTAACCATGACAACGAGGCCAACACGCGGAAGCTGCACACGCTTAACTCACAGGTGTAGATTTGGACACCATGCCTAAATTCCGTGAACTGGAAGCTGAgtctcctcatcatcctcatcatcctcatcctcatcatcctcatcctcatcctctgcTGGCCAACAGATACGTCATTCAGCAGAGACTCGGCAGGGGAAGTTTCGGCACTGTGTATCTCATTGAAGACACAAAAACGACAATCAGAGACAAACTTAAAGTTCTGAAGGAGATCCCAGTTGGAGATTTGAAGCCGGATGAGACGGTGAAGGCCACACAGGAAGCTCAGCTCCTCTCGCAGCTCCATCATCCAGCCATCCTCAGATTCTACACCAGCTTCCTGGAGAGAGACGCTTTCTGCATCATCACCGAGTTCTGCGAGgacGGGGATTTGGAGTGTAAGCTGGAGCGGTTGCGTGTCTCAGGAGAAGCTCTGTCTGAGTCTCAGATCAGGGAGTGGCTCGTTCAGCTGCTGCTGGGGGTCGACTACATGCACGAGAGGCGGATTCTACACCGAGACCTGAAAACCAAGAATGTGTTCCTGAAGAAGAACGCTGTAAAGATCGGTGATTTTGGCGTGTCATGCCTGCTGATGGGGTCATGTGACTTCGCCACCACGTTCACAGGAACGCCTTACTACATGAGTCCTGAGGCTCTCGGTCACCAAGGTTACGACTCCAAATCAGACATGTGgtctttAGGCTGCATCCTGTATGAGATGTGCTGCCTGAAACATGCCTTTGAGGGACACAACTTCCTGTCCGTGGTGCAGAAGATCATGGAAAGTTCCACGCCGTCCCTGTCGGAGAAATACTCACCAGAGCTCAACTCCTTAATGCAGAGgatgtTGGAGAAATCCCCGTCACTGAGGGTTTCCGCAGCTGAAGCTCTGAGCAGTAGCGTTATTAAGGAGCTGACTCAGtgtgtgaagCAGCAGCTCTCGGAGGGGACGGCGGGGGACGACAGAGACGCGTCTCACATCGCTAGCGTGCTGCAGAAGAAAGTGCACCTGCAGACGCTGAGGGAAAGGTCAGAGGTCGAGAAGATGAGTCCTCGAGAGCGGATGAGGCTGAGGAAGCAGCAGGCCGCTGACGACAGAGCCAGGAAGCTAAAtctgaacgtgtgtgtgtgtgtgtgtgtgtgttggtttgtgtTTATGTACAGACATATTGTGGaggagaaatataaagaaaatcagCAGCGCATGATTGAGCTCCGGTCCAAAAACTTCCAAAGAGTCAGCATCAACGTTCTCACTGAGAAAGCTGAGGACACAGTGAGACAAATCCAGCCAATCAGACAAGAGGATGCTACACCAAGCAGCCATCCTGGACCAATGGGAGAGCAGCTCACTGAACATGacatcCCTGAGGACCCTCAGGCAGCAGAAGTGTATTATTCTGAAGATGGATTCGAGTCGTGTTCAGATGAAGATGATTTCTGCTCTGAAGTTCCCACACAggACAGTGATCTGGAGGCCGTGGTGCGACACATGGAGGACGTTCTGGGGGAGAAATCTGTTGcaggtGAAGCTGACGGAGGTGTGTCTCACGCGGGTGTGTATGGACCGCTCAGCATCAACAGCACCATGGATTAATTCTAATCCAGAACATGAGAGAAGTTGAGATTTAGAGGCTggcaggaggagagagggatgaagaaGAGGAGTAAAGAGAGGATAGAAACAGtacagtgGCGTTTCCTTCACCGTAGGGACccgagacaggaggagagagtgtgattggtggagagagagaagtgattCAGGAAGATGGAGGCAGTGAAGATGGAGACAGAGTGCGTTTAGTGTGGAGGGGGCTGATTACCAGCAGCCTTGATTACCTTCAATAATCAGCTACATGCACtgctttactgtgtgtgtg

Function

GO: NA

KEGG:

id description
K20880 NEK11; NIMA (never in mitosis gene a)-related kinase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384711 lncRNA downstream 92191 880609 ~ 955392 (-) False G324649
TU384710 lncRNA downstream 92191 887291 ~ 955392 (-) False G324649
TU384712 lncRNA downstream 92191 951850 ~ 955392 (-) False G324649
TU384713 lncRNA downstream 92191 951850 ~ 955392 (-) True G324649
TU384715 lncRNA downstream 165297 881639 ~ 882286 (-) True G324650
TU384805 lncRNA upstream 17654 1119771 ~ 1186077 (-) True G324726
TU384808 lncRNA upstream 24727 1126844 ~ 1127617 (-) True G324729
TU384810 lncRNA upstream 42469 1144586 ~ 1169331 (-) True G324731
TU384797 lncRNA upstream 192748 1294865 ~ 1314580 (-) False scap
TU384802 lncRNA upstream 301172 1403289 ~ 1405287 (-) False kif13a
XM_026911513.2 mRNA downstream 127674 915919 ~ 919909 (-) True si:dkey-11p23.7
XM_026911505.2 mRNA downstream 145321 897326 ~ 902262 (-) True LOC113525074
XM_034298084.1 mRNA downstream 190850 847835 ~ 856733 (-) False ubxn11
XM_034298083.1 mRNA downstream 190850 847835 ~ 856733 (-) True ubxn11
XM_034298118.1 mRNA downstream 215662 820622 ~ 831921 (-) True mtdhb
XM_034298036.1 mRNA upstream 23787 1125904 ~ 1234282 (-) False LOC117595783
XM_034298035.1 mRNA upstream 126176 1228293 ~ 1234282 (-) True LOC117595783
XM_026924893.2 mRNA upstream 171276 1273393 ~ 1275839 (-) True LOC113533061
XM_026924640.2 mRNA upstream 179329 1281446 ~ 1285879 (-) True LOC113532917
XM_034298041.1 mRNA upstream 179329 1281446 ~ 1285792 (-) False LOC113532917
TU384611 other downstream 319949 726627 ~ 727634 (-) True G324579
TU384497 other downstream 690962 350738 ~ 356621 (-) False slc4a7
TU384829 other upstream 268359 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 327815 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 986142 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 2135584 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 3861500 4963617 ~ 4977453 (-) False ubr5

Expression Profile