RNA id: XM_026911515.2


Basic Information

Item Value
RNA id XM_026911515.2
length 1426
RNA type mRNA
GC content 0.42
exon number 5
gene id cmtm7
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 923165 ~ 930865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGACACACATAGCACttccaggacacacacacacacacacacacacacactgattctcATATAAAAtccttaactttttttttttaaaggaacaaaATGTCGCACAGGATTGTTACGACCACATCCACGACTACGACTACGACTACGACTTCAGATGGAGGATTTCTAAACATCGGCTATTGTCGCTCTTTTCCTGGATTATTAAAACTCGCCCAAGTGGTGACCCTAATGATCGCCTTCCTGTGTGTCCATTGCGCCCCCAGATGGACAGATTACGATGCGTTTCGCTACTTTGAGGTGGTCACATTGTGGTTCCTCTTCGCCTTCCTCATCTTCTTCCTCATGTACGTGTTCAGGCTGCAGAGCAAACTCCCCTGCATTAACTGGACGCTGACGGAGTTTTTTCATTACATCTTGGGCACCATCCTGGTCTTCATCGCCTCCATCGTAGCAGCAGTGAAGAGCTACAGCGTCTCTGCTCTCATAGCTGGATCTgttTTTGGCTTTATTGCGACTTTTCTTCTTGCGGTCAGTTTATGGATGTCGTACAGCGTCACGTGCGGCTCTCAGCAAACCAGTATCGGTGTGTAACGGGACCCAATCCAAAGTTACAAGAAGGAATTAATTTGATCAGTTACTGTATCGAGTGCCTCAAATGTGCTGAGAGTTCAGCCCTGTCCTGAACGCTGCAGTTTATACGATTTGGAAACATGCTCCCtaaccctacattcacactagcaggcGACGAGTCGCTTGTGTCACTTGGAGTTCGTCTCTTGTGGACGTGTAGCGAATGCTGCTGTTGTCACGTGCTGTGGGCGTGGCCCGTCCAGCAAGAACCATCTCCTCTCGCTGTCGCGCGTTTGCGTAGAAAAGGattgtcgcttgctagtgtgaaggTAGGATAAAGCTCTAAGTGTCACACAGAGAAGGTGACGCATCAGGATTGACCGCAGACTGAACCGACATGTTAGTGAatgttgattttattatattcattattgcAGTATTGAAATTCCTGATTAGAGAATTTAAAGCTCAGATTCAATATTTTATACACAAGGTTTTTCCTATTTAAGTCTTATTCACTGCAGCTTTGAGGTGGGTTAAAATATagaatgaatcttttttttattccatttatatcaaagagtgtttatttattttttaaagaactgatgatgatgatgatgatgagatagTTTTGCTTAAATTTAGAAGTATAGAGCTGGATTTGGAGCGATTCACAGTGTTATTATCAACTATTCAAAGAGCAATATTTCCTTTTTGTGAACTTAACTCACTGTGTAAAgtgatttctttctctctctgtatccctttttttttttagtaaacacAATCCTACATTTTACTGTGCTGACTCTAGTggcaaaaatggaaaaatataataaatatgcagTTGTT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384127 lncRNA upstream 169829 749451 ~ 753443 (+) True G324216
TU384129 lncRNA upstream 169829 749451 ~ 753443 (+) False G324216
TU384105 lncRNA upstream 209471 713395 ~ 713801 (+) True G324197
TU384065 lncRNA upstream 314570 607612 ~ 608702 (+) True G324161
TU384063 lncRNA upstream 315729 607045 ~ 607543 (+) True G324160
TU384216 lncRNA downstream 380046 1310911 ~ 1315115 (+) True G324284
TU384226 lncRNA downstream 398782 1329647 ~ 1330871 (+) True G324294
TU384239 lncRNA downstream 408663 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA downstream 410260 1341125 ~ 1342780 (+) True G324305
TU384269 lncRNA downstream 447681 1378546 ~ 1378940 (+) True G324328
XM_034298228.1 mRNA upstream 9022 908628 ~ 914250 (+) True LOC117595801
XM_034297868.1 mRNA upstream 16568 904463 ~ 906704 (+) True rpp25l
XM_026911498.2 mRNA upstream 16568 904463 ~ 906704 (+) False rpp25l
XM_026911499.2 mRNA upstream 16568 904463 ~ 906704 (+) False rpp25l
XM_034298121.1 mRNA upstream 29670 866394 ~ 893602 (+) True atp2c1
XM_026911500.2 mRNA downstream 3289 934154 ~ 955393 (+) True cmtm6
XM_034298029.1 mRNA downstream 4533 935398 ~ 955393 (+) False cmtm6
XM_034298030.1 mRNA downstream 4777 935642 ~ 955393 (+) False cmtm6
XM_026911517.2 mRNA downstream 25719 956584 ~ 1010223 (+) True cpne4a
XM_026911516.2 mRNA downstream 26260 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 116744 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 174797 745673 ~ 748475 (+) True G324206
TU384064 other upstream 313263 607612 ~ 610009 (+) False G324161
TU384003 other upstream 316358 606086 ~ 606914 (+) False G324123
TU384046 other upstream 365133 557415 ~ 558139 (+) True G324143
XR_004576993.1 other downstream 26260 957125 ~ 1010223 (+) False cpne4a
TU384187 other downstream 187403 1118268 ~ 1163614 (+) True G324258
TU385279 other downstream 1211641 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 1279357 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 1279357 2210222 ~ 2214261 (+) False LOC113533074

Expression Profile