RNA id: XM_026911516.2


Basic Information

Item Value
RNA id XM_026911516.2
length 3765
RNA type mRNA
GC content 0.45
exon number 16
gene id cpne4a
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 956584 ~ 1010223 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTCTGGAGTGGCAGTATAAAGCTCAGTGTAGAGAGGAGCAGAAACATCAAACACTCTGTGCAGAAAACTCTCAGCCTCTTCTAGTCCTCTATATCCCTCTGTATCCCTCTTCATCCCTCTGTATTCCTCTTTATTCCTCTACACAGCTCCTCaacacctgagctcaggatggacTCCAGGATGGAGGTTTACACACTTTCCTCTGTTTAATTCCTTCATTAAACCCTCATCTGCCTGGATTTATTTCTTCCATGTTTAAGCGTCAGCACTGAACTGAAAATGAGTGACATCTACGAGTCGGCCGCCACCTCGCTGGGGCTCTTTAACAGTCCCTGCCTGACTAAAGTGGAGCTGCGCGTGGCGTGTAAAGGAATCTCGGACCGGGACGCTCTGTCCAAACCCGACCCCTGCGTCCTGCTCAAGATGCAGTCGCACGGCCAGTGGATCGAGGTGGACAGGACGGAGGTGATCCGGAGCTCCATCAACCCCACGTTCTCCAAAGTGTTCACCCTCGACTATTACTTCGAGGAAGTGCAGCGTCTCCGCTTCGAGCTCTACGACATCAGCAGCAGCCACAACGGCACCAAGGAGGCCGACTGCCTGGGGGCTATGGAGTGTACACTGggacagATTGTGTCCCAGAGAAAGCTGTCCAAAGCTCTGCTGAAACACAGCAACACCGTGGGCAAGTCCACCATCATGGTCACAGCAGAGGAACTGACGGGGAATGATGACTACGTAGAGCTGTCATTCAGTGCCAGGAAACTGGATGATAAGGACTTTTTCAGCAAATCAGATCCGTTTCTGGAGATTTACAGAGTGAACGATGACGGAACGCAGCAGCTGGTGTACAGGACagagACGGTCATGAACAACCTGAACCCAGTGTGGAAGACTTTCAAAACCTCTCTGAACTGTCTGTGCAGCGGAGATCATGACAGGATACTGAAGTGCTCTGTGTGGGACTGGGACTCCAACGGCAAACACGACTTCATCGGCGAGTTTGAAGCCACTTTTAAAGAGATGCGCGGAGCCATCGACGGCAAGCAGGTGCAGTGGGAGTGCATAAACCCCAAATATAAAATCAAGAAGAAGAATTACAGGAACTCTGGGATTGTCATTCTGAATCAGTGTAAGATTATAAAGATGCACTCGTTCCTTGACTACATCATGGGCGGATGCCAGATCCAGTTTACAGTCGCTATTGATTTCACGGCGTCTAATGGAGACCCGCGGAACAGCTGCTCTTTACACTACATCCACCCGTACCAGCCCAACGAGTATCTCAAAGCGCTGGTCGCTGTCGGAGAGATCTGCCAGGATTATGACAGTGATAAAATGTTTCCGGCGTTCGGCTTCGGAGCTCGGATTCCTCCCGACTTTAAGGTGTCACATGACTTCGCTGTGAACTTTAATGAAGATAATCCTGAATGTGCAGgtatacAGGGTGTAGTAGAAGCCTATCAGAACTGCCTCCCTAAGATCCAGCTGTACGGCCCCACCAACATCGCCCCCATCATCCAGAAAGTGGCGCAGTCCGCCTCCGAGGAACTGCACGTCCGCCAGGccatgcagtACTTTATCCTCCTGATCCTGACGGATGGTGTGATCACAGACATGGCTGACACGAGGGAAGCCATCGTTCACGCGTCTCACCTGCCCATGTCCATCATCATCGTGGGCGTGGGGAACGCAGACTTCACCGACATGCAGATTCTGGACGGAGACGACGGGATCCTGCGCTCGCCCAAAGGAGAACCGGTGCTGAGGGACATCGTCCAGTTCGTCCCCTTCCGCAACTTCAAACACGCGTCTCCTGCAGCGCTGGCCAAAAGCGTTTTAGCCGAAGTGCCCAACCAGGTGGTGGATTATTACAACAGCAAGGGCATCAAACCCAAATGCCCCAGCGAGTTCGAGTCTTCCAGGACGTTTAGCCGCTGAACTCTGATTACAATCTGACTACGATCCGATTAGGATCTGATTAGGATCTGATTAGGATCAGCACGTCTCTGTCAGTCTGTCGCTCGTTTCTTTGCATGCGTGGATGTGTAGGCTAAAGCGAAAGTGCCAACACACGCGTCCGGCGTGGAGACACGGAGACTCTGCATGTTTCTCAGAGTTATAACtgatctgtttcttttttatgtctATATTTAAACTGAGATTTTGCTAAATTTCGTAAAATTCTTACATTGTAAAGCATTTTGGATGGAGATCATTGAGAATGTTTAGCTCTCTGTATTAGATACTGAAGGTCTGCACCTTGAGATAAAacgtggtttttttttgcacatgagCAAATGCATGATTGTATTTTGCATGataacataaattaataaaactaaatttCTCCATGTTTTGGTCTGGGGATTGGAAGTGAAGTAGGTAAGGGTGTGTCCCAAACGCTAGTGCTGGAGAGAAAAGATCTTACTGGAATTCATTCTAACGATTGTTGAGAAAACTGAAGACAAGACGCCGTAACTTTAATAAGTTTAGCAAACAAAGTGATAAAACGCTAATAATGTAACAGTGCAGCAATTTCAGAACACAATACATTGCTGTTATCAGAAACTAATCAGCGACAGTGTGGTGTGACGTGGCCTAAAgcgaagtggagttactgttcccaccctgaagatgattattttcctgtaacagctcaTCtcctggtgttttattcctcttataccacagcagttagCAAacaatgacactggagactccttccataaagttCAATTACAGAAAACGCCACCATATTAagtttatgtgaagcgtccgCCGTacagctgttgctatagaaacgataacatattattttaacgtgcgcattaatataaacccgtgatttgcagctgcactactgtcaaagctgctgttctagaaaactaatcaacatctgacgaatcacaatccagaattcagcagcgctgtaaAAACGTGTAAAAGCTTCACGTGCAGCTCTATAAATCTTTGAAtctaaagagaaaaacaacagataTCTAACATTAGCTACTTTGCTAATAAAACCTTTATCTTGCTTTTATAGTGGCTAGTATGCGTCACAGAGACCCCGCCCACCAAACGAAttttaataatacttaataCAGTTTACTATATTATACATGCACCATTTTTATAATTCGATTTAATAAATTGACAAAATTTGGATTATTACGTAAAGATATAACTTCTGTAATTTTTACGTGACCTCCATTTTGAGAACAActggttaattaattaataacaaccaattaattagtaattaataatcatttttgatatttatatagCATATTCAGTAGGTAGCTATGAATTTATATAGCATATTCAGTAGGTAGCAGACTTTTGACCATTTTACGATGTTAAAATTGACAGAACGCCGAAAATAACCTTGTACAAACATGGAGAGAAACATCCTGAGGTCAGTTTTAGAGAAGATTCTGTGAGTGTGAGCTTTAAGAGCGCTGACTAGCGTTTGGGACGAGGCCTGTGGTTACGCTCCTGTATCCTCCGATCAGTAAAAGCACAACAGAGTAACACTTTAGAATATTTGATTGAGGTAGTTTATTAGAGTTTGATAATAAAGTGCTataaacggtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtggggaTTGTGATGAGTGTTTTCTGAGAGTGTGGAATAAAACTGCATGCATGTGGTTTACTGTAACAGACGTCAGTGTGACATTTGTATTCTAAAGTGTTACCTATATTAACTAATGATTAAATCGTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384127 lncRNA upstream 203682 749451 ~ 753443 (+) True G324216
TU384129 lncRNA upstream 203682 749451 ~ 753443 (+) False G324216
TU384105 lncRNA upstream 243324 713395 ~ 713801 (+) True G324197
TU384065 lncRNA upstream 348423 607612 ~ 608702 (+) True G324161
TU384063 lncRNA upstream 349582 607045 ~ 607543 (+) True G324160
TU384216 lncRNA downstream 300688 1310911 ~ 1315115 (+) True G324284
TU384226 lncRNA downstream 319424 1329647 ~ 1330871 (+) True G324294
TU384239 lncRNA downstream 329305 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA downstream 330902 1341125 ~ 1342780 (+) True G324305
TU384269 lncRNA downstream 368323 1378546 ~ 1378940 (+) True G324328
XM_026911500.2 mRNA upstream 1732 934154 ~ 955393 (+) True cmtm6
XM_034298029.1 mRNA upstream 1732 935398 ~ 955393 (+) False cmtm6
XM_034298030.1 mRNA upstream 1732 935642 ~ 955393 (+) False cmtm6
XM_026911514.2 mRNA upstream 26260 923165 ~ 930865 (+) True cmtm7
XM_034298039.1 mRNA downstream 93516 1103739 ~ 1124181 (+) False LOC113525078
XM_034298038.1 mRNA downstream 108039 1118262 ~ 1124181 (+) True LOC113525078
XM_034298040.1 mRNA downstream 128056 1138279 ~ 1166958 (+) True LOC117595784
XM_034298042.1 mRNA downstream 175297 1185520 ~ 1187361 (+) True LOC113541446
XM_026924349.2 mRNA downstream 286653 1296876 ~ 1310714 (+) True ptpn23a
XR_004576966.1 other upstream 150597 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 208650 745673 ~ 748475 (+) True G324206
TU384064 other upstream 347116 607612 ~ 610009 (+) False G324161
TU384003 other upstream 350211 606086 ~ 606914 (+) False G324123
TU384046 other upstream 398986 557415 ~ 558139 (+) True G324143
TU384187 other downstream 108045 1118268 ~ 1163614 (+) True G324258
TU385279 other downstream 1132283 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 1199999 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 1199999 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 1555477 2565700 ~ 2569739 (+) False G325435

Expression Profile