RNA id: XR_003402673.2


Basic Information

Item Value
RNA id XR_003402673.2
length 1950
RNA type misc_RNA
GC content 0.47
exon number 15
gene id vipr2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20744749 ~ 20764373 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctcctctctcctctcctcactcctctctcctctcctctcctctcctctcttcactCCTCTCTTCACTCCACCGCTCAGCAGCACAGCGTTTCTAAATTCTCGAATATTTTGTGCCATATTAggttttatgcattttattttaaaaggctCATTATTTCAGTACACACATTGTAAAGAACATCTGGAGCGGTTTAATCTGGGACTACAGAAGAGAGAAATGTTCCGGCTGCAGTGTTCCTGTGTTCTGCTGCTCTGGATGGCAGACTGCGTTAGCGGGAGACATCCGAGCTGCCGCTTCTGGTTTGAGCTGCAGTCAGCAGAGAGAGAATGTCTGTCCACGCTGGAGACAAGTCTGGAGTCTGGAGGCTGCCCAGGCATGTGGGACAACTTTTCCTGTTGGGACCATGCAGAAGTTGGTGAAGTGGTCACCAATCCCTGTCCAGAGGCTCTGAAAAACCTCTTTGGCCAAGACgggAACATCAGCAGAAACTGTACAACTAAAGGCTGGTCAGACTCCTACCCCAGCATCAacactgtctgtttttctgaatCCAAACCCAACGAGCAGGTGTTTTACATGGTGGTGAAGACGCTGTACACACTGGGACACAGTCTGTCTCTCATCGCTCTCCTCACTGGCAGTGCCATCCTGTGTCTTTTCAgGAAGCTTCACTGCACCAGGAACTACATCCATCTGAATCTGTTCATCTCCTTCATCCTGAGATCCGTAGCCGTGTTGACTAAGGACgccattttattttctcccagTGAAAACACAGAATGTGACAAACAGCCCTCACTGATCGGGTGTAAAGCCAGTCTGGTCAGTTTTCACTATTTCATTATGGCTAATTTCTTCTGGCTGCTGGTGGAGGGTCTGTACCTTCACACTCTGCTGATGGTGATCTTCTCCAAGAATCACCACTTTCTCGTCTATCTCTTTATTGGATGGGGATTTCCGACAGTGTTCGTGACAGCGTGGGTAATTTGTAGAATTTATCTAGAGGACACAGGATGCTGGGAAAGAAATGAAGCCACGATTCCTTGGAGGGTGATCGACTGGCCAGTCATGGCCTCTGTTATAaTCAACTTCATTCTTTTCATCAGCATCATTCAGATTCTGGTTCAGAAGCTGCGTTGCCCAGATGTAGGGGGAAACGACCAGAGTCAGTACAGGAGGCTGGCAAAGTCAACACTGTTGCTGATTCCACTCTTTGGGGTTAATTATGTGGTGTTTGTGTACATGAGAGAAGAGAGTCAAAATGACGTATTCAAAGACTATAAAATATTCTTTGACCTTGGTCTTGGCTCTTTCCAGGGACTGGTTGTTGCCATTTTATATTGCTTTCTCAACAGTGAgGTCCAGTGTGAGCTAAAGAGGaagtggaggagtgtgtgtctgaagcGTTACATTGGCCGAGACTACCGGCTGCACAGTTCGTCCATCTCTAGAAACGGCACAGACAACGTGGCACTTTTTCTTCGTAACTCTAGAGCTCAGTCCTTCCTACAGACCACTGAAACCACTGTCTATAGTCAATAACACCTGCTGAAATGAGACTCCTGACTGAGGGCGAGTTGCTTTTTTGGTGGGGATGTACGTGCTTGACTGGACAAAGACATTGTCAAGTCTCTCTGCTGAATATTGACACCGGCTAGGGCCACATGGCCATCCAGCACCACCATCAACATCTCTCAAAGCTTGAATGACCACACCATGCGAGAAGCTGAAGGACACGACCAAAGaaaaatttgttaaattttatGGATGAGAGCAGTCTAGCACAGAGCTGACACACCAAAAGTGATCAAGCACAAAGATGTCAGACACAGACAAATAGGGCCTGGAGAATTCCAACACTTGAGCTTGGGCCTGTTAGAGCTGCAACCAGCAAACAAACTCCAGTAACCATCAAAATGAAAACAACCTAAAGATAGACAAAAA

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397526 lncRNA upstream 121598 20619515 ~ 20623151 (+) True G335706
TU397525 lncRNA upstream 130125 20614394 ~ 20614624 (+) True G335705
TU397507 lncRNA upstream 179005 20564650 ~ 20565744 (+) True G335689
TU397495 lncRNA upstream 214541 20529746 ~ 20530208 (+) True G335681
TU397422 lncRNA upstream 320141 20424212 ~ 20424608 (+) False G335619
TU397702 lncRNA downstream 15811 20780184 ~ 20780551 (+) True G335845
TU397703 lncRNA downstream 30098 20794471 ~ 20829883 (+) False G335846
TU397704 lncRNA downstream 30098 20794471 ~ 20893384 (+) True G335846
TU397705 lncRNA downstream 121497 20885870 ~ 20886149 (+) True G335847
TU397714 lncRNA downstream 143860 20908233 ~ 20908467 (+) True G335856
XM_034298021.1 mRNA upstream 18644 20617744 ~ 20726105 (+) False dip2ca
XM_034298295.1 mRNA downstream 246499 21010872 ~ 21024050 (+) True LOC113525236
XM_034298296.1 mRNA downstream 246499 21010872 ~ 21022383 (+) False LOC113525236
TU397368 other upstream 469058 20274120 ~ 20275691 (+) False lrrc34
TU397154 other upstream 581643 20160400 ~ 20163106 (+) False ccl20b
TU396960 other upstream 955691 19788583 ~ 19789058 (+) True G335231
TU396585 other upstream 1060879 19678481 ~ 19683870 (+) True si:ch73-264p11.1

Expression Profile