RNA id: XM_026912112.2


Basic Information

Item Value
RNA id XM_026912112.2
length 2174
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC113525556
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 96799 ~ 107798 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taatgatatttaaatctGTAGCTACAAATAtgatattgtataatttatatgattataaattTTGTGGAATACTTAATGCCTATAAATTATTTCTTCCTTCAGACTGAAGCTCTGCCCCCAAAACCAGCCCTGCCTTCAAATTTAGCTGTATCTGTACTTACAGCCTCGCCTCCATCAACAGACGTAGCTCCACCCATGACTGTAGCCGTAAATACAGCTCCGCCTCCACCAACAGACCTGACTCCGCCCACATTCCCCTCTTCTCTTACAATTCCTCCTTCACTAACAGCCTCAGATTTGGCTCCACCCACAGCCCAGCCTTTAACCCTGCCTCAGCTCATAGCCCTGCCTCCAGACACAGATTTGTCTCCTTCCACAACCCCACCTCTACTCACTGCTCCACCTCCACAAAGAGCCCCGCCCCAAGCCTCAACACATCCACAGGCTCTAACAATACCCTCTACTCTGTCAATAAACCCCACCTCCCAGAATTCCTCTGCCATAACGCCACTGCCCCTCCCACTTCCTCCAGGAGGCCACGCCCTCATTCTCAACCCCACTCCTATTCTCACTCCTCCATCGTCCTCCACGTCTCAGTCTGCTTTAGAAACACAACCTACACTTCAGCAACACTTGTCTGGTGAATGCCTCCGCCCTCAGCAACTGACCTTTGACCCGAGCCCTAACTTTGACCTTCACCTTGACCTCGACCCCCCAGTGGGTGGCACTGATCTGTGTAAAGGAGCTGCTGATGAAGAGTCAGctgtgtgtgtgttcagactgTGGCCTGCGTGTCCATCTCGCCTGGCGTTAATTTCAGCTCTGATTCCATtcttcatcatcgtcatcaccaTCATTGTCACAGTGAGGTTTGTGTCTTTCCCACCAAAAATGAGAGACAACAGCGCCTCCTGTGACATGAAGTGGAACTGCAGCGTGACGTCAGTGCCTTCATATACACCTAAActtcctgtcaatcaaacactaaacacttcCTCAGttttctcAGACTGCACTGGTCCAGCAGGGGTCTTGGAACGGATTGTGGGCGGGACCGTGGCTCGGCAGGATCAGTGGGCGTGGCAGGCCAGTCTGCAGTGGAGGGGCCAGCACGTGTGTGGGGGGGCGATAATCACTCCAAACTGGGTCATAACTGCTGCTCACTGCTTCAtcgagtATGACCTGATGCTGGAAGCTGATTGGCAGGTGGTGGTCGATACACTCGTCGTGTCTGATGTGTCACACGGTCGGCGCTACAACACactgcgcatacacacacaccccaaataCTCAAAACAAACCAACGACTACGACCTCGGcctgctgctcacacacactgccatgaggatgggggacagTGTGCGCCCTGTGTGTTTGCCGATTATTCCTCAGTCATTCCCCGTCGGCTCGTCCTGCTGGGTGACCGGGTGGGGCTTCACACACGAAGGAGgctcGGTGTCGGCTCAGCTCAGACAGGCGCAGGTGCACATTATCGATCAGACAGTGTGCTCTGGTTCCTCAGTCTACGGTTCCTACATCACTCCCAGAATGCTTTGCGCCGGGGACATGGAGGGCGGAGTCGACGCCTGCCAGggggACAGCGGGGGACCCCTGGTATGTGAGACGGCTGATGGGGATTGGCGGCTGGCGGGCGTGGTCAGTTGGGGTGACGGATGTGGACGACCGAATAAACCTGGAGTTTATGCACGAGTGACATCACTACTGCAGTGgattaaacaacacacacagGATGGAGCTGCGAGCGGATCAGCGCTCGCTCACACTGAGGCCACAGCGGCGCCGTATTCCTCTCTATAACAGTGGAAATGTTGTATTAGTGTGTTATAAAGGTGTAATCAgctttaaagtgtgtgtgaagtggaaCAGCAGGAATGTTGTGTCCTGAACACTGGCACAGccaaaattatattttgatattgtttatattttcttttatttagaaTAATGAACTGTTTGCCACTAGGCCTGAGtgataatttaatattaatattctgaTTAATGACAGAACTTTTCTGAGATTCTGCAGGTGTTTATTAATAacttcattattatattattcctGCAgctttacattacagtatactTTCATACCACTTTTCCCTTCCATTTCTCtaataaagatatttatttgaaatctaaaatgattttgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383884 lncRNA upstream 5189 91952 ~ 92848 (+) True G324041
TU383856 lncRNA upstream 39485 57345 ~ 58552 (+) True G324026
TU383885 lncRNA downstream 8616 116414 ~ 120887 (+) True G324042
TU383880 lncRNA downstream 9169 116967 ~ 150990 (+) True G324039
TU383888 lncRNA downstream 29303 137101 ~ 138861 (+) True G324045
TU383892 lncRNA downstream 74708 182506 ~ 193845 (+) False cmc1
TU383893 lncRNA downstream 74708 182506 ~ 190432 (+) True cmc1
XM_034298002.1 mRNA upstream 2309 77198 ~ 95728 (+) False xrcc1
XM_034297999.1 mRNA upstream 2309 77199 ~ 95728 (+) True xrcc1
XM_034298001.1 mRNA upstream 2309 77199 ~ 95728 (+) False xrcc1
XM_034298000.1 mRNA upstream 2309 77199 ~ 95728 (+) False xrcc1
XM_026912125.2 mRNA upstream 30038 63577 ~ 67999 (+) True LOC113525566
XM_026912119.2 mRNA downstream 420 108218 ~ 115146 (+) True ethe1
XM_026909662.2 mRNA downstream 74669 182467 ~ 193626 (+) False cmc1
XM_034297886.1 mRNA downstream 114719 222517 ~ 231494 (+) True zgc:114181
XM_034298133.1 mRNA downstream 194082 301880 ~ 321183 (+) True tbx20
XM_034298255.1 mRNA downstream 225886 333684 ~ 350549 (+) True dpy19l1l
XR_003402678.2 other upstream 64248 25296 ~ 33789 (+) False nod1
TU383850 other upstream 74827 22297 ~ 23210 (+) True G324020
TU383916 other downstream 133399 241197 ~ 292588 (+) True G324068
TU383926 other downstream 198383 306181 ~ 311233 (+) False tbx20
TU383913 other downstream 207552 315350 ~ 321774 (+) False tbx20
TU383914 other downstream 246983 354781 ~ 412109 (+) True G324067
TU383942 other downstream 330593 438391 ~ 442287 (+) True G324085

Expression Profile