RNA id: XM_026912119.2


Basic Information

Item Value
RNA id XM_026912119.2
length 1124
RNA type mRNA
GC content 0.50
exon number 7
gene id ethe1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 108218 ~ 115146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acgcccacacacacacacacgcatacatacatacacacacacacgcatacacacacacacacatacacacacacacacacacgcagtgttGCTCAGAGCAGCAGGCTGGTCCGGTGGTGTAACGCAGTGTAACGTGTTGAGCgggtgtgttgggtgtgttggGGTGATGGCTTTAtcagtgaggagtgtgaggtCTCTGCTCGCAGTCCGGAGTGTGATCTCCCGGAAGTGTTCACTCGGAGTGCACACAGGAGTGAGAGTGATGGACAGCAATAAGGGTCTCCTGTTCCGCCAGcTGTTTGAGTCCTCCAGCAGTACCTACACATACCTGCTGGCAGACGTGAGTTCTCGGGAGGCCGTGCTGATTGACCCGGTTCTGGAGACGGTAGATCGGGACGTGAAGCTGATTGAGGAGCTCGGGCTTAAACTGACTGTGGCAGCGAACACACACTGCCATGCGGATCATGTGACAGGAACTGGACTGCTGAAGAAGCGCATATTCGGGGTGAAGAGCGCGATATCAAAACACAGTGGAGCGCGTGCCGACATCCTGCTGTCAGAAGGAGACAGCATTACTTTCGGAAAATACtgtgtgacggTGAGAGAGACTCCAGGACACACAGATGGGTGTGTGACGTTTGTGACAGGAGACGATTCGATGGCCTTCACTGGAGATGCACTGCTGATCAGAGGCTGCGGGAGAACCGACTTCCAACAAgGCTGTGCCAAGAAACTGTACCAGTCTATCCATGAGAAGATCTTCACTTTACCGGGACACTGTCTGGTTTATCCTGCACACGActacaaaggacAGACTGTGTCcacagtggaggaggagagaaagttTAACCCGAGATTAACTCGCTCGCAGGAGGAGTTTGTGGAAATCATGAACAATCTGAATCTCCCGAAACCGGCCAAGATTGATGTGGCCGTTCCTGCTAACCTGGTGTGCGGTCTTCATGATGTTTGAGGAGGAAATATATTTGAATTACTTTAACGTTTGGAAAACAgacaaatgtcattttattagaTACAGATATTAGattaatgtacacacactcactctctctctcacacactggcTCATACAGTGTCTtctattaaagaaaatgtttcttCTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17725 ETHE1; sulfur dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383884 lncRNA upstream 15370 91952 ~ 92848 (+) True G324041
TU383856 lncRNA upstream 49666 57345 ~ 58552 (+) True G324026
TU383885 lncRNA downstream 1268 116414 ~ 120887 (+) True G324042
TU383880 lncRNA downstream 1821 116967 ~ 150990 (+) True G324039
TU383888 lncRNA downstream 21955 137101 ~ 138861 (+) True G324045
TU383892 lncRNA downstream 67360 182506 ~ 193845 (+) False cmc1
TU383893 lncRNA downstream 67360 182506 ~ 190432 (+) True cmc1
XM_026912112.2 mRNA upstream 420 98037 ~ 107798 (+) False LOC113525556
XM_026912116.2 mRNA upstream 420 98037 ~ 107798 (+) False LOC113525556
XM_026912114.2 mRNA upstream 421 96799 ~ 107797 (+) True LOC113525556
XM_026912113.2 mRNA upstream 421 98037 ~ 107797 (+) False LOC113525556
XM_034298002.1 mRNA upstream 12490 77198 ~ 95728 (+) False xrcc1
XM_026909662.2 mRNA downstream 67321 182467 ~ 193626 (+) False cmc1
XM_034297886.1 mRNA downstream 107371 222517 ~ 231494 (+) True zgc:114181
XM_034298133.1 mRNA downstream 186734 301880 ~ 321183 (+) True tbx20
XM_034298255.1 mRNA downstream 218538 333684 ~ 350549 (+) True dpy19l1l
XM_034297869.1 mRNA downstream 340370 455516 ~ 456979 (+) True LOC117595771
XR_003402678.2 other upstream 74429 25296 ~ 33789 (+) False nod1
TU383850 other upstream 85008 22297 ~ 23210 (+) True G324020
TU383916 other downstream 126051 241197 ~ 292588 (+) True G324068
TU383926 other downstream 191035 306181 ~ 311233 (+) False tbx20
TU383913 other downstream 200204 315350 ~ 321774 (+) False tbx20
TU383914 other downstream 239635 354781 ~ 412109 (+) True G324067
TU383942 other downstream 323245 438391 ~ 442287 (+) True G324085

Expression Profile