RNA id: XM_034298201.1


Basic Information

Item Value
RNA id XM_034298201.1
length 3964
RNA type mRNA
GC content 0.47
exon number 13
gene id nod1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 25296 ~ 35772 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cactttcacttcctCATAAAGCCTCAGAGTCAGAGATTTATCACACTGCTCGTATTCGCCATTTTAACACCGTCCTCTCCTCAGCGCTTTCTTAAGCACGTAACTTTCCACCTTCATTTTGGCTGTTTTGTTTGATTGGTGTTTGACTGGTGTTTGACTGGTGTTTGATTGGTGTTTATCGCTGTACTGGAGAGGTCTCTGTGCGGGAGAGAGGACTCGGAGCTCGGGAAGCGgtGCAACTACTGAAAGGTTCAACCTTCCCATCATTGtctgaggtcatgtgaccagagATTTTCTACAATTACTGAAAAGGTCCCAGCATCGTTCATGGGCAGAAAGTTCTGTGTGAAAGTGTTTGGTTTCTGATACACAGCACTCCCCGCAGGCCACACCCAGACAGCCCTGTGAACAGAGAACCGATCTGAGGTCGGCACGTTATTGTGTGATGGCTGCTTGTTTCTGATGGACAATGTTTCCCGCAGACGGGAATTAGACTTGGAATAAAATTGGACAGGATGGAGCTAGTGTGAGAGTTCTATAGAGAGTTAAGGCTCCTTAATTCTAATGATGGGCTGTGAGGATCAGGATGGAGCCGAAGCTCCTCTCGATGCCTGTAGGTTACTCACACATCACCGAGAGGTTTTAGTGGAACTGGTGAAAAATACACAGTGCATTTTAGACAACCTGAAGATGAATGGCTTCATCTGCAATGAAGACATTGAGATTATCCAGCGTTCATTCACTAAAACAGAGCAGGTGCGTAAAATCTTGGAGTTGGTGCAGAGTAAAGGTGAAGAGGCTTCTGCGTATTTTATTCACATTCTGTACCAGGCATATGACGCATTCATCGACCTTCGGCCTTGGTTTAACACAATTCACTACAAACCTGCCGAGTGTGTGAAGGACATACCTGTGATTAACACAGACCCCATTAGTAGATACAGTGAGAAACTCAGACAGGAACTTGGCAGAGACACTCAGTTCCTCACCTCTTACTCTCAGAAGGAAGAGACGCGACTGGAGGagttttatacagacacacagatggaaATCCTGAATGAGCGAGGAGAGAGTCTGGGCTTCCTGAAGAGTCTGGATGAGATTCTAGGAGAAGAAGGTGTGTTTAACCAGCAGGCTGGGACCATCTTAATCACAGGTGATGCTGGAGTGGGAAAATCTATTCTGCTTCAGAAACTACAGAACCTGTGGTCCAAAAGAGAGCTGAACACCAGAGCAAAGTTCTTCTTCACATTCAGATGCAGAATGTTCAGCACCTTTAAGGAGACTGATGAGATCTCAGTGAAGGATCTGATATTCAAACACAATTGCTATCCAGATGAAGACCCGGATGGCGAGGTGTTCAGCTACATCCTGCGATTTCCAGAGTCCATACTTTTCACGTTTGATGGATATGATGAAATCCAGATGGACTTTGATCTAGAAAACATACCAGAGGTGGTTTCTCCTGAGGAAAGGACACACCCACTTTTAGTTCTCATGAACCTGCTGAGAGGAAAATTGCTCAAAGGTTCCAGAAAAATCCTAACGGCTCGAACCGGCACAGAAATCCAGAGCAGAGTGATCCGGAAGAAAGTGTTTCTTAGAGGCTTCTCACCAGAACACCTCAAACAATATCTGTCTCATCATTTTCCCGTGCAGGAGCAGAGGGATATGGTATCTGTGCAGCTGGACGCAAACCCTCACCTCTGTGGTCTCTGCTCTTTCCCATTGTTCAGCTGGATCATTTTCAAGAGCTTTAAGCACCTTCAGAGTGTGTACGATGATGTCGAGCTGCCGGACTCATGCATCACTCTCACCAACGTCTTCCTCCTGCTGGCGGAGGTGTCCCTGAGCCGGAGCAGTACGAGTGCTGGACTCTTGAATAGAAGCACACGCTGCACCGTAGACACATTTAAATCAGGGCTGAAGGTGCTCTCTGCCTTCGCCAAGCTTGCACTGCTGGGTCTGGAAAAGAGCAGCTTCATTTACACCCATGATGAGGTTTCATCCTGTGGCCTTAGCGATGACGACATACAAGTTGGATTTCTGAGGCCCGTCAGTCACTACAACACATGTGGCACTTTGGCAACTTACGAGTTTCTCCATGTGACACTGCAGGCATTTCTGGCTGCATTTTGTCTCATCTTGGATCTGCACATCATTCCTGATGGGATCCTGAGGTTCTTCTCTAAGTGTGAATACCATAAGGCATCCCAATTGACCTGCCTGTCCTGTTTGGGGACATCGTCCCATCCAAGAAATTCAGATCCCTTTCAGACGAATGAGCACTTTCAGTTCACAAACCTGTTCCTGTGCGGCCTGTTATCCAAATCCAACGCCTTCCTCCTGGAGCACCTTGTCCCTCCAGCATCACTGAAGAAAAAGCGAAAGGCTCTGAAGTACTACTTTTCCTCCAGCGTAAAGACACACCTGAGTGGCCTGCCTCGCTACCCAAGCACCGACATCAAGGGAAATAAAGTGCATGTGATGCCAAACTTCCTGTGGATGCTGCGCTGTATATTTGAGACTCACAGCGAGGACGTGGCTCGTCTGACAGCTAAAGGAATCTCAGCAGATTACCTCAAACTGGCATACTGTAACATCTACTCAGCCGACTGCAGCGCTCTCAACTTCGTCCTTCATCACCACAGGAAGTATTTAGCAGTCGATCtggacaacaacaacatcagcgACTATGGTGTGAAGCAGCTCACTCCTTTGTTTAGCAAAATGACCGTAGTCAGGTTTTGTGTGAATCAGCTGACCGACAGCAGTGTGGAAGTTTTGGCTACAGAACTCATCAAACACAAAATCGTTAAGGTTTTGGGACTTTACAAGAATCACATCACAGATGTCGGAGCCAAACTGGTGGCACAGATAATCGATGAATGTCCTCACCTGAGAACTGTCAAGCTCGGCTATAATCATATCACAGCCGTGGGTGCGACATTTCTTGCTGAAGCTATTCGGAAAAGCAAATCGATCTTCGATGTCGGCATGTGGGGGAACAGTATTGGAGACGACGGTGCTCATGCTTTCGCTGAGGCAATAAAGAACCACAGCAGCTTAACGAATCTCAGTCTGTCCGCAAACGAGATCACATCTGAGGGAGGAATAAGTTTAGCGAGAGCGTTAACGCTAAATTCCAGCCTTCACATCTTCTGGCTGATTCAAAACAACATCTCGGACGATGCAGCAGTGGAGCTAGCCAAAGCGTTTCAGAAGAATTCGGCGCTCACACACCTCATgttaaATTACAATCAGTTTTCTGCTCATGGAGTTGAACACCTCGCTGAAGGtctgaaacacaacacaacaattaAAGAAGTCaatttAAAGGGGAATCAGATCAGTGTAGAGGACGAGTTTCGCTTCAAGGAGGAGAAAAGACTTCGATTCTGTTGAGGATTAAACACCACACTTCCTGTCAGACCACTGACACAGCAGTGTTTACACACCTGTACTGCAGTGTCTCAAGCAGCGTCCATGTCTTATTCCCAGCTCAGCCCTTAGCCCCTGACCCTGCCTGTCCCCACCATGGCCCTGCCTTGACCCCGCCCTGGCCCCATCTATCACAAACTCCTCATAACACATCTTCAACTCTTACTCTCCTTGTGAACATTTAAGCTCTCTTGCCCATGAACAAGCCACACCACAGATGTGCACCCTGTCTGGAATACTATTGTATTTCTGAATGAGTGTCCTGCCTAGacatctgtctgtcagtctgtctgtctgtcagtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctccttctctgtctatctgtctgcaCTTGACTCCTGTCTTGTCAGTGCACATGGATCTAAGAGCCAATCTGAGCGgtgaaccagactcaaaatggaacccatcctGAAACCAATGACACCACAtaatacaattataaataatttcaattataaataaagttattaactgttctaTGATGGA

Function

GO: NA

KEGG:

id description
K08727 NOD1, CARD4; nucleotide-binding oligomerization domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383856 lncRNA downstream 21573 57345 ~ 58552 (+) True G324026
TU383884 lncRNA downstream 56180 91952 ~ 92848 (+) True G324041
TU383885 lncRNA downstream 80642 116414 ~ 120887 (+) True G324042
TU383880 lncRNA downstream 81195 116967 ~ 150990 (+) True G324039
TU383888 lncRNA downstream 101329 137101 ~ 138861 (+) True G324045
XM_026912124.2 mRNA upstream 10727 5556 ~ 14572 (+) True ggctb
XM_026912125.2 mRNA downstream 27805 63577 ~ 67999 (+) True LOC113525566
XM_034298002.1 mRNA downstream 41426 77198 ~ 95728 (+) False xrcc1
XM_034297999.1 mRNA downstream 41427 77199 ~ 95728 (+) True xrcc1
XM_034298001.1 mRNA downstream 41427 77199 ~ 95728 (+) False xrcc1
XM_034298000.1 mRNA downstream 41427 77199 ~ 95728 (+) False xrcc1
TU383850 other upstream 2089 22297 ~ 23210 (+) True G324020
TU383916 other downstream 205425 241197 ~ 292588 (+) True G324068
TU383926 other downstream 270409 306181 ~ 311233 (+) False tbx20
TU383913 other downstream 279578 315350 ~ 321774 (+) False tbx20
TU383914 other downstream 319009 354781 ~ 412109 (+) True G324067
TU383942 other downstream 402619 438391 ~ 442287 (+) True G324085

Expression Profile