RNA id: XR_003402678.2


Basic Information

Item Value
RNA id XR_003402678.2
length 3028
RNA type misc_RNA
GC content 0.47
exon number 9
gene id nod1
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 25296 ~ 35772 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttcactttcacttcctCATAAAGCCTCAGAGTCAGAGATTTATCACACTGCTCGTATTCGCCATTTTAACACCGTCCTCTCCTCAGCGCTTTCTTAAGCACGTAACTTTCCACCTTCATTTTGGCTGTTTTGTTTGATTGGTGTTTGACTGGTGTTTGACTGGTGTTTGATTGGTGTTTATCGCTGTACTGGAGAGGTCTCTGTGCGGGAGAGAGGACTCGGAGCTCGGGAAGCGGTCCCAGCATCGTTCATGGGCAGAAAGTTCTGTGTGAAAGTGTTTGGTTTCTGATACACAGCACTCCCCGCAGGCCACACCCAGACAGCCCTGTGAACAGAGAACCGATCTGAGGTCGGCACGTTATTGTGTGATGGCTGCTTGTTTCTGATGGACAATGTTTCCCGCAGACGGGAATTAGACTTGGAATAAAATTGGACAGGATGGAGCTAGTGTGAGAGTTCTATAGAGAGTTAAGGCTCCTTAATTCTAATGATGGGCTGTGAGGATCAGGATGGAGCCGAAGCTCCTCTCGATGCCTGTAGGTTACTCACACATCACCGAGAGGTTTTAGTGGAACTGGTGAAAAATACACAGTGCATTTTAGACAACCTGAAGATGAATGGCTTCATCTGCAATGAAGACATTGAGATTATCCAGCGTTCATTCACTAAAACAGAGCAGGTGCGTAAAATCTTGGAGTTGGTGCAGAGTAAAGGTGAAGAGGCTTCTGCGTATTTTATTCACATTCTGTACCAGGCATATGACGCATTCATCGACCTTCGGCCTTGGTTTAACACAATTCACTACAAACCTGCCGAGTGTGTGAAGGACATACCTGTGATTAACACAGACCCCATTAGTAGATACAGTGAGAAACTCAGACAGGAACTTGGCAGAGACACTCAGTTCCTCACCTCTTACTCTCAGAAGGAAGAGACGCGACTGGAGGagttttatacagacacacagatggaaATCCTGAATGAGCGAGGAGAGAGTCTGGGCTTCCTGAAGAGTCTGGATGAGATTCTAGGAGAAGAAGGTGTGTTTAACCAGCAGGCTGGGACCATCTTAATCACAGGTGATGCTGGAGTGGGAAAATCTATTCTGCTTCAGAAACTACAGAACCTGTGGTCCAAAAGAGAGCTGAACACCAGAGCAAAGTTCTTCTTCACATTCAGATGCAGAATGTTCAGCACCTTTAAGGAGACTGATGAGATCTCAGTGAAGGATCTGATATTCAAACACAATTGCTATCCAGATGAAGACCCGGATGGCGAGGTGTTCAGCTACATCCTGCGATTTCCAGAGTCCATACTTTTCACGTTTGATGGATATGATGAAATCCAGATGGACTTTGATCTAGAAAACATACCAGAGGTGGTTTCTCCTGAGGAAAGGACACACCCACTTTTAGTTCTCATGAACCTGCTGAGAGGAAAATTGCTCAAAGGTTCCAGAAAAATCCTAACGGCTCGAACCGGCACAGAAATCCAGAGCAGAGTGATCCGGAAGAAAGTGTTTCTTAGAGGCTTCTCACCAGAACACCTCAAACAATATCTGTCTCATCATTTTCCCGTGCAGGAGCAGAGGGATATGGTATCTGTGCAGCTGGACGCAAACCCTCACCTCTGTGGTCTCTGCTCTTTCCCATTGTTCAGCTGGATCATTTTCAAGAGCTTTAAGCACCTTCAGAGTGTGTACGATGATGTCGAGCTGCCGGACTCATGCATCACTCTCACCAACGTCTTCCTCCTGCTGGCGGAGGTGTCCCTGAGCCGGAGCAGTACGAGTGCTGGACTCTTGAATAGAAGCACACGCTGCACCGTAGACACATTTAAATCAGGGCTGAAGGTGCTCTCTGCCTTCGCCAAGCTTGCACTGCTGGGTCTGGAAAAGAGCAGCTTCATTTACACCCATGATGAGGTTTCATCCTGTGGCCTTAGCGATGACGACATACAAGTTGGATTTCTGAGGCCCGTCAGTCACTACAACACATGTGGCACTTTGGCAACTTACGAGTTTCTCCATGTGACACTGCAGGCATTTCTGGCTGCATTTTGTCTCATCTTGGATCTGCACATCATTCCTGATGGGATCCTGAGGTTCTTCTCTAAGTGTGAATACCATAAGGCATCCCAATTGACCTGCCTGTCCTGTTTGGGGACATCGTCCCATCCAAGAAATTCAGATCCCTTTCAGACGAATGAGCACTTTCAGTTCACAAACCTGTTCCTGTGCGGCCTGTTATCCAAATCCAACGCCTTCCTCCTGGAGCACCTTGTCCCTCCAGCATCACTGAAGAAAAAGCGAAAGGCTCTGAAGTACTACTTTTCCTCCAGCGTAAAGACACACCTGAGTGGCCTGCCTCGCTACCCAAGCACCGACATCAAGGGAAATAAAGTGCATGTGATGCCAAACTTCCTGTGGATGCTGCGCTGTATATTTGAGACTCACAGCGAGGACGTGGCTCGTCTGACAGCTAAAGGAATCTCAGCAGATTACCTCAAACTGGCATACTGTAACATCTACTCAGCCGACTGCAGCGCTCTCAACTTCGTCCTTCATCACCACAGGAAGTATTTAGCAGTCGATCtggacaacaacaacatcagcgACTATGGTGTGAAGCAGCTCACTCCTTTGTTTAGCAAAATGACCGTAGTCAGGTTTTGTGTGAATCAGCTGACCGACAGCAGTGTGGAAGTTTTGGCTACAGAACTCATCAAACACAAAATCGTTAAGACTTTACAAGAATCACATCACAGATGTCGGAGCCAAACTGGTGGCACAGATAATCGATGAATGTCCTCACCTGAGAACTGTCAAGCTCGGCTATAATCATATCACAGCCGTGGGTGCGACATTTCTTGCTGAAGCTATTCGGAAAAGCAAATCGATCTTCGATGTCGGCATGTGGGGGAACAGTATTGGAGACGACGGTGCTCATGCTTTCGCTGAGGCAATAAAGAACCACAGCAGCTTAACGAATCTCAGTCTGTCCGCAAACGAGATCACATCTGAGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383856 lncRNA downstream 23556 57345 ~ 58552 (+) True G324026
TU383884 lncRNA downstream 58163 91952 ~ 92848 (+) True G324041
TU383885 lncRNA downstream 82625 116414 ~ 120887 (+) True G324042
TU383880 lncRNA downstream 83178 116967 ~ 150990 (+) True G324039
TU383888 lncRNA downstream 103312 137101 ~ 138861 (+) True G324045
XM_026912124.2 mRNA upstream 10724 5556 ~ 14572 (+) True ggctb
XM_026912125.2 mRNA downstream 29788 63577 ~ 67999 (+) True LOC113525566
XM_034298002.1 mRNA downstream 43409 77198 ~ 95728 (+) False xrcc1
XM_034297999.1 mRNA downstream 43410 77199 ~ 95728 (+) True xrcc1
XM_034298001.1 mRNA downstream 43410 77199 ~ 95728 (+) False xrcc1
XM_034298000.1 mRNA downstream 43410 77199 ~ 95728 (+) False xrcc1
TU383850 other upstream 2086 22297 ~ 23210 (+) True G324020
TU383916 other downstream 207408 241197 ~ 292588 (+) True G324068
TU383926 other downstream 272392 306181 ~ 311233 (+) False tbx20
TU383913 other downstream 281561 315350 ~ 321774 (+) False tbx20
TU383914 other downstream 320992 354781 ~ 412109 (+) True G324067
TU383942 other downstream 404602 438391 ~ 442287 (+) True G324085

Expression Profile