RNA id: XM_026923880.2


Basic Information

Item Value
RNA id XM_026923880.2
length 2731
RNA type mRNA
GC content 0.45
exon number 7
gene id ifnlr1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4842459 ~ 4856152 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacacacctgctaaaGGGCACTTCTTTACCCTGGATTCTTCAGAGATGGAACAGAGATAGAAGACGGCTCATGGCTCATGTCTGTCCCGGACACAGGGGGGAAAGAAGACtaaaagatgtgtttttgtcccAATTCTGATGAAAAATTGCTCTGAATATCTGTGGAGTCCTGTGAGGGAAATCAAAACTActagtctttgttttttttttccttgaactCTGCTATGGATCTGGATTTGTGGCCTCTAAGAGCACTTTTCCTGCTTGTCTGGTGTTCAGGCTTCTGTTGCAATGGTTGCAATATGACAAAGGTGTATTTTGATTCCCGCAATTTTCACACCAGGGTCCGCTGGGATGAAGTGAAAATCCCAGGCCAAGAAGTTCGCTATAGCGTCAGATTTCACGTATATGGAGAGCGATACAAGCTGATGATTGGATGCCAGAATATCTCTGAACCTTTCTGTGATCTCAGTTCTGTGATGACGGACATTCGCGCTAAATATTTTGTCAAGATCATGGCGGATGAGTTATGCCTCGGCgaatacacacacttcatcccCTTAGAAAAAACTTCTCTGGAAGCTCCAAAGCTGTCCGTGATAACGGTAGGGTCCTCTCTCACCGTAACACTCACAACTCCCATGGGGCCTTGGAACCACTCAATTAGGGAGATCAGCTGTTGGGAAAGGTGCCAGGATTCTGGGAAATCATCTGTTAACTACATTGTCAGTCTCACACACCCAGAGTCTGAAGCTAGAAAGGTGTTTCAGAACACGTCTGGCATGATTACACTGAGTCATCTACACGTGAACACGGAGTACTGTGGCATTGTGTTGTATGAGCTCACCCATCCCTCCATAAAACGACAGAGTGAAAACACCACCTTCTGTGTGACTTTGCCAGctgCAGACAAGCCCTGGATTCCTGTATTCATCATCTCTGCATTAGTAGCTCTTTTCCTCTTGATCACCTTGGCGTGGATTTTGTGCCAGCAGCACGTCACAAGGAAGAGGAACCTGCCCAAGGCGTTGCACATCATGTCGATGAACACCACTCCTAATTTCAACCCAGATCCTAAAGTGGAGATAACCACCGTGATGGTATACACTAAACCTCCATGGAATACTGTCAAGTCTGATCTAGCCTTACCTGATTCCTTACCTGAGTCAAAAGCTGTGAGCAATGCAGGTTACGCAGCCCAGGACTACCATGACCAAGATTGGCACTGTCATTCTTACACTAATGAACAGGTGGCGCCAGTTAGTGACCGGAGTGCTGAATCCTGCACCAGTTATAGCATGGTGGTGGGTGTGATGGTACCCCAGGATCGAGAGGAGTTGTCCAGTTGTGCTAACGACAGTGGGTTAGGAGACTCCATCAGCCCTGGATTGTCCTCTTGCACAGAAGAGGATCTATTCCAGGTCATATCTAATGCAGAACCAGAAGAAGACCTGGACATGATAGAGCCAGACTCCACCAGTGAGCTTTTGGTGCTGCCAGTGTCACGTGGCACCAATGGGATACTGCAGTTCTCCAGCTTAGCATTCCAGCCTCTGGCTTCAAATGTAAACCACAGCTCAGAGATTGTGCCTCTTGTGGCAAGGTCAACAACAGCTGGAGAGAGGACTCTTTTGTTGACAGATCTTGTCTCCATGGATGACTTACACTGGACAGACAATGAAACAAGTTCTGATTACAGGAAAGCCTACCTACCAAACGGGGTGCCTCAGAGCTGCTCGGAGTTACCCTCTAGTAAAACTATTTCCACAATTCTGTTATCTGACTCTACATCCAACTATAGAGAAAACTGGGTACCGGGAATCCTACCAGATCCCCTGCCAAATGACAGGAACTGCATTGTGAGTGACAATCAGCTACATGAATTGGCTGAACCAGAAGAGGGTGTAGGTGAATCACCATCAGCAACCTTTTTAGGTGGATGGATGGTGCAAATCCAAGGatagtatcttttttttcttaagcatTGGCTCTGACTCTTAGTGCTGGCTTAAAAAGAATTATTTAGCCATCCACAATCATGTTGTTAATGAAGAATGAAAACCACTCACTAGGCAAtggctatatttaaaaaacataacttTTGGTCAGGTATGAGTAGCAGATGTTAGGTAGGAATTGGACTTCAGGAAGGGTGAAGGAGACTGAAACAACTCTTGAGTGCTTGCTAATGAGGAGAGAACATTTCCCATATGTCTCATGTCTCATATCTATGGCCTTTGTAGTGGTACTCACAGCTAAGCCTGTAGGATTACAGCATCACACCATTTGGTGTTTAAGATGCTCCAGCACTTGTACCACACATCTCAGCTAAAGTTCATTAGCCAACTGTCAAACAGTTGAAGAAGATGTGTTAAACTTTAGTAACACTAAGCAGTGTAGTGAAGTAACACTTGTGTGGAATGTGATGGAACAGTTGAAACTGGTTTACTTTTTGCACCAAATACATTGTTTAGGTTTTGCAGTTTGACtctatagccaaaagtttgggGACACCTAGCCCTCAATACCCATATGTGCTCTCCCTTTAACTTTATCTGCccctataacagcctccactctggGAGTGGGAAGGCTTTCtgcccattcagctacaagtgCATTAGTGAGGTAAGACACAGAGGTGAGGTGAAGGAGGCTGGTgtacagtcagcattccaattcatcccataggtgttcagtggggttgaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386800 lncRNA upstream 38400 4803837 ~ 4804059 (+) True G326429
XR_003403355.2 lncRNA upstream 38948 4800572 ~ 4803511 (+) True LOC113532560
TU386745 lncRNA upstream 185944 4649025 ~ 4656515 (+) True G326374
TU386740 lncRNA upstream 255137 4579550 ~ 4587322 (+) True G326369
TU386730 lncRNA upstream 299764 4542427 ~ 4542695 (+) True G326359
TU386812 lncRNA downstream 68026 4924178 ~ 4924636 (+) True G326440
TU386834 lncRNA downstream 127321 4983473 ~ 4983680 (+) True G326458
TU386818 lncRNA downstream 129338 4985490 ~ 4989316 (+) False klf10
TU386838 lncRNA downstream 163630 5019782 ~ 5029790 (+) True G326462
TU387473 lncRNA downstream 455079 5311231 ~ 5314589 (+) False acbd7
XM_026924220.2 mRNA upstream 71843 4556125 ~ 4770616 (+) False LOC113532696
XM_026924218.2 mRNA upstream 71843 4561256 ~ 4770616 (+) True LOC113532696
XM_026924511.2 mRNA upstream 297112 4501487 ~ 4545347 (+) True slc9a1a
XM_034298293.1 mRNA upstream 408208 4398659 ~ 4434251 (+) False LOC113532991
XM_026924871.2 mRNA downstream 8417 4864569 ~ 4918469 (+) True myom3
XM_026924089.2 mRNA downstream 65021 4921173 ~ 4923671 (+) False fabp10a
XM_026924600.2 mRNA downstream 68629 4924781 ~ 4930155 (+) False srsf10a
XM_026924263.2 mRNA downstream 128263 4984415 ~ 4988847 (+) True klf10
XM_026924264.2 mRNA downstream 128264 4984416 ~ 4988847 (+) False klf10
TU386582 other upstream 828921 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2272720 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 2628160 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 2628198 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 2697948 2142506 ~ 2144511 (+) False bola1
TU386810 other downstream 64828 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 68634 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 476116 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3045640 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3532035 8388187 ~ 8484833 (+) False LOC113532774

Expression Profile