Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026923884.2 |
| length | 2164 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 7 |
| gene id | tfap2a |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 8993786 ~ 9005220 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0050935 | iridophore differentiation | biological_process |
| GO:0030182 | neuron differentiation | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0014032 | neural crest cell development | biological_process |
| GO:0014036 | neural crest cell fate specification | biological_process |
| GO:0060788 | ectodermal placode formation | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0030902 | hindbrain development | biological_process |
| GO:0048701 | embryonic cranial skeleton morphogenesis | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU390202 | lncRNA | upstream | 20199 | 8973237 ~ 8973587 (+) | True | G329361 |
| TU390192 | lncRNA | upstream | 48230 | 8942878 ~ 8945556 (+) | True | G329354 |
| TU390105 | lncRNA | upstream | 244753 | 8748820 ~ 8749033 (+) | True | G329288 |
| TU389928 | lncRNA | upstream | 294626 | 8694403 ~ 8699160 (+) | True | G329126 |
| TU389908 | lncRNA | upstream | 327950 | 8652436 ~ 8665836 (+) | True | G329111 |
| TU390394 | lncRNA | downstream | 329966 | 9335186 ~ 9335808 (+) | True | G329523 |
| TU390393 | lncRNA | downstream | 346930 | 9352150 ~ 9352733 (+) | True | G329522 |
| XR_004576957.1 | lncRNA | downstream | 467396 | 9472616 ~ 9482817 (+) | True | LOC117595781 |
| TU390448 | lncRNA | downstream | 475119 | 9480339 ~ 9480553 (+) | True | G329574 |
| TU390455 | lncRNA | downstream | 486054 | 9491274 ~ 9491545 (+) | True | G329581 |
| XM_034298066.1 | mRNA | upstream | 70993 | 8851404 ~ 8922793 (+) | True | bmp6 |
| XM_034298065.1 | mRNA | upstream | 70993 | 8852464 ~ 8922793 (+) | False | bmp6 |
| XM_034298063.1 | mRNA | upstream | 70993 | 8853014 ~ 8922793 (+) | False | bmp6 |
| XM_034298064.1 | mRNA | upstream | 70993 | 8853014 ~ 8922793 (+) | False | bmp6 |
| XM_026924126.2 | mRNA | upstream | 70993 | 8853014 ~ 8922793 (+) | False | bmp6 |
| XM_026924687.2 | mRNA | downstream | 77759 | 9082979 ~ 9188076 (+) | True | ofcc1 |
| XM_026924663.2 | mRNA | downstream | 327895 | 9333115 ~ 9349506 (+) | False | slc35b3 |
| XM_026924664.2 | mRNA | downstream | 328269 | 9333489 ~ 9349506 (+) | True | slc35b3 |
| XM_026924966.2 | mRNA | downstream | 395022 | 9400242 ~ 9415382 (+) | True | eef1e1 |
| XM_026924967.2 | mRNA | downstream | 395022 | 9400242 ~ 9415382 (+) | False | eef1e1 |
| TU390118 | other | upstream | 137510 | 8853328 ~ 8856276 (+) | False | bmp6 |
| XR_004576948.1 | other | upstream | 174519 | 8768746 ~ 8819267 (+) | False | LOC113532648 |
| XR_004576949.1 | other | upstream | 178226 | 8768745 ~ 8815560 (+) | False | LOC113532648 |
| TU389909 | other | upstream | 327950 | 8615073 ~ 8665836 (+) | False | G329111 |
| XR_004576973.1 | other | upstream | 508953 | 8388187 ~ 8484833 (+) | False | LOC113532774 |
| TU390686 | other | downstream | 786464 | 9791684 ~ 9792733 (+) | True | G329779 |
| TU390970 | other | downstream | 1426113 | 10431333 ~ 10432864 (+) | True | G330038 |
| TU390999 | other | downstream | 1589982 | 10595202 ~ 10678375 (+) | False | gli3 |
| XR_004576967.1 | other | downstream | 1868989 | 10874209 ~ 10984209 (+) | True | acad11 |
| XR_003404155.2 | other | downstream | 1868989 | 10874209 ~ 10984209 (+) | False | acad11 |
