RNA id: XM_026923888.2


Basic Information

Item Value
RNA id XM_026923888.2
length 2608
RNA type mRNA
GC content 0.48
exon number 11
gene id rundc3b
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5356182 ~ 5386626 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGGTGCGCACGTGACTGGTGAAGgcgagggctgcgtcccaatcTGCGCGCGCACTACCCTAACGCATAGTACGTCCAAATAATACGTCAAATACAGGTTACCATAGTTACCATATGTAGCGTAGTATTTGCACGCGCTGCTTAGTAGGCTACAGTGATGTGAGATTGGGACGCAGCCGAGGTAAATCCTTCCCTTCTGCTTCTGCAGCACGCCTCCGTGATCGAACCGCGGGGCCTCGTGAGGAGGACAGGGCATAAAAGCAAAGgtgggacagacagacagacagacagatagacacacagaTCTCAGGACTGCACAGGAAGCGGGCATGGCATCCCCGAGCCTGGGGTTTAACGGGGCTCGGAAGAAAGCCGCCGCGAGGAACGGAGTCGTGGAGAGGAGGAATTTAATCACCGTGTGCAGGTTCTCGGTGAAAACGCTGATTGACCGATCTTGTTATGAAACTATAGATGACACATCGCCAGAGTTCATCAATTTTGTCTCCATTCTGGAACATATCCTCAGCCATCGGCTCAAAGGTCAGATCACTTGGTTTGGCTACGAGAGTCCACGTAGTTTCTGGGATTATGTGCGTGTGGCCTGTAGCAAAGTCCCTCACAGCTGCATCCCAAGCATTGAGAGCATGGAGAATGTACGCAGTTCCAGAGCCAAGGGTCGCGCATGGATCCGAGTTGCCTTGATGGAGAAACGGCTCTCTGAATATATATCTGCTGCCTTGAGAGACTTCAAAACCACAAGAAGGTTTTATGAGGATGGTGCGATAGTGCTGGGAGAGGAAGCTGGTGTGCTGGCAGATACTCTCATTGGACTAAACGCTATTGATTTCAGTTTTTGTCTGAAGGGTGAGAGTTTGGATGGAAGCTGTCCTGCTGTGATTGACTACACACCTTACCTCAAGTTCACGCAAACCTCGGACAGCATCAGCAGTGACGAGGAGGAGATGAGGACTCTGGGTAGCAGTGGCAGCGAGGCCAGCACTCCGGAGACCAACATGGCCGCCTGCTTGAGCACGGACCTGAGCAGCTGGTACAGCAAGTGTAAAAGAGTGGAGCAGAAATACAGAGTGGTGCTGGAACAAAAGGGTTATCTAGAGGAGCTGGTTCGTCTGAGAGAGGCTCAGCTTTCAGAGTCCGTCTCCCAAAATAAAGCTTTACTGCAGCGTTTTGCAGAAGCCGGCATCAACCATAAACTGGAGAAAGAACAGCTGGAGTTCATCATCTTGGAGCTCCAGGACCAGCTAACTGTACTGAAGAACCATGACCTGCGATCCAGACAGGAGCTCACCTCtcacctgaccaatcagtggCCCTCGCCCGGTGCCATGGACGGCAGCGCCGTCGCTCTGGACACCCTCCTCTACCAGAAGCGCACAGGACGCTGGGAAGAGAAGAGCTTTCCGAGTCTGGACCAGCTGTCCGCCGATATGAGCCTGTCTCAGATGTCCCTGgagccgggacacacacacacgcacagtctGGATGGCAAGACCGGACTCGCCCCCTGGCACAGAGAAGgtaAAGAGGACACGCCGTCTCTCAGAGGTCTGTGTGGGTCTCTGACTTCAGTGGCCAGCTATAAATCTCTGGCCAGCCTGAAGTCCAGTGAGTATCTGGCGAGTCCCACTACGGATATGACCAGCCCAGGGCTCACTCCGTCCTAAACgcgctcacaaacacacacacacacacacacacacacacacacacacacattttgtacaTATACATGTATTAAAGTTATTTAACCATAAACTGAAAGCATagtattaaacatttttagagTCTGAGAATCAGACTCTGTTACTGGACCAGATCTGACTGCACTGTGCTAAATCACATGATCAAATGATCAAAGCTAAATCATGGAAAACTACCTAAAAGCTTGACATCAGTATTACTCTTGTGTCTTTTAATGTGCAAttcttaatttcttattttcacatttcttaTTTTCCAGCTTAAAACACTATGctacaggggtggacaaatcaagTAAAATCAGGtaaaaagctccagtgtgctgcccagttcCATGTTTATTTGCATGAAAATGGAACTAACACAATGTAATAATGCATAGCAACTTGGTTAGCTAGTTGAGTGGATTAATACAGACTAACCCTACGTTTACAGGGGCAAAATCGGTTGTTTGAGTTACATGTTGCATGCTAGGCTTTGTACTTGCTTaattagcagattagcaaagcaagctaactgcaCTAACTGCGGTATGTGCACACACCAGAGTCAACTATTCTCTCTGCTGTTTCCCTAAAAGgtgtatttttcttcataatgccTTTATGTACATTTAACGAGAGGTCATATGTGTCGGGAAAAGACGAAACCTTGATAAGTTTTTACTCAATTTTTGTGCATCagttgcaggtaggaactaaagttgtgagtgagataactatgaataaaaaaactaatatccCATGCACATAATCCGCTTGTACCAGGAGCACATGCTggtgatttgtccacctctgtTTAATACAGGCAactccataagtatttggacagtgacacaatacaccaccacaatggatctgaaatgaagcaatcaagatgtgatggaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387473 lncRNA upstream 41598 5311231 ~ 5314589 (+) False acbd7
TU386838 lncRNA upstream 326397 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 366871 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 372507 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 431551 4924178 ~ 4924636 (+) True G326440
TU387573 lncRNA downstream 154732 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 219244 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 446367 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 455593 5842219 ~ 5842438 (+) True G327391
TU388624 lncRNA downstream 1261654 6648280 ~ 6708779 (+) True G328024
XM_034298071.1 mRNA upstream 24973 5317198 ~ 5331214 (+) True crot
XM_026924204.2 mRNA upstream 41573 5311209 ~ 5314614 (+) True acbd7
XM_026924202.2 mRNA upstream 49048 5298302 ~ 5307139 (+) True nmt2
XM_026924452.2 mRNA upstream 61444 5260438 ~ 5294743 (+) True fam171a1
XM_026924393.2 mRNA upstream 97628 5254686 ~ 5258559 (+) True LOC113532775
XM_026924768.2 mRNA downstream 14307 5400933 ~ 5411050 (+) False dbf4
XM_026924767.2 mRNA downstream 14308 5400934 ~ 5411050 (+) False dbf4
XM_026924766.2 mRNA downstream 14309 5400935 ~ 5411050 (+) True dbf4
XM_026924170.2 mRNA downstream 29306 5415932 ~ 5492739 (+) True adam22
XM_026924167.2 mRNA downstream 29308 5415934 ~ 5492739 (+) False adam22
TU387482 other upstream 17936 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 426033 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 432506 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1342649 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2786448 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 2515166 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3001561 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3228447 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3382119 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 3382120 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile