RNA id: XM_026923952.2


Basic Information

Item Value
RNA id XM_026923952.2
length 1736
RNA type mRNA
GC content 0.46
exon number 3
gene id ccdc127a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5550225 ~ 5553304 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGTCTGTTTTGCGTTGGTTGCGTAAATAACGTTCAGAGCGTAACACTGCGCGGAGCTGAGCGCACCTTGAAGAAGAAACAGTACGTGAGTGTTTAGTGCTATTTCTCAAGACTATCTCCATGAACAACCTGAATGATCCTCCTGGATGGAATATAAGGCCAGTGCCACATGAGGGTCCTGATGGGGGGAAATGGAACTACGCTCTGTTAGTGCCGATGCTTGGCCTTGCGGCCTTTCGTTGGATCTGGACACGTGAGTCACAGAGGCAGATCCAAGAAGCAAAAAGCCAGTTCGAGGGGGACGTGGCTGCCGTTGCCAAAGACCTGGAGCTCAAGTATAAAGATACGCTGACGGAGAACCGGCGCACGACCGCCCTCCTGGAGCTGGAGCTAGAGAAAGCGCGTCAGCGGGTGGAGGGCTACAAGAAGGCCCTGGCCTCTCAGAGCCAGCATCTCCTGGAGGAGCGCAAGCAGCTGCATAAGGAACGTGAGGAGctagaggaggagaagaagcgTGCTCTGCAGACTGGAGCAGCTGGACTGGCGCTTGATGCGGCTCTGCAACAGGAGGAGGACTGGCAGCAGAGAGCCCAGGTTTTGCTACAGGACCTGGAGCACCAGCTGGTGGAGAGGCAGAACGCCTTCTGCAGCCTCCTGCTGCCTAGGAAACACaggatggagatggagaaagatCTGCTGCTCAGGGTAGTCAAGAACCCGGTGGGGGCGGAACTGGGGCTGGAGGATGACATCagggacatttttaaaaatgataggCACTGCGCAGACATGATGAATATGGACAGGAGGAAAAATGGGAAGCTGATGTGGCTGTATCTTAAATACTGGAGGCTGCAGGTTACACTGCAGAAACACAAGAGAGCAGAGGACAGGTTGAAAGGATCGCTGCCTGATGTCAAGTGAAggaaatttagaaaaatatagTAGTTGCTTTTAACCCCGTGATACGTCAATAGTGTGTGGCAATACTCATGGTTTGCACCAatgcatatgtatatacagattagcaaattaaaggaaaacaatgGTGGCACCATGTTTCTGgtgtccacttgtccccttagagtgAAGCATCTATTTAAATCAATACACAGTTTTGATCTGAATAGATGCTTCACCTTTATCCACGATGAACCCGTCTCTATCCACACAGTACAAGTAAATGGTTGATGAAAAgcaaaatgatataaatcatatgctCTGGCCTTCTCAGTCAATACATCTCAAGCTacttgaacacctatgggagattttggagtgacacACACCTCCCTTGCACTGCGCTCTCctacaccaccaccatcataaAAACACACCACCTGAGGGAAAACCTTTAGGAAGAACAGTCTTCATCACTCTGGTACATTTCCAGAGACTTGGAGAATCTATGACGTGGTGCACTGAAGGTGTTCTGGTGGCTCATCATgacccaacaccttactaagacactcttctttaatttgtcatccgTCTGTATGTTTCCTTAACTTTGTCTAGTCAAgcacatttatgacatttttttggGATGAGACTACTAAACCTACTGAcaatcatttgaaaataatgCTGCTTCTGTGAGTGTATAACATCTTTTCTGTTATTCAGCATGAAATTATAGCTGTTTCACCTGGACTTTTTTATTCCTACAGATATAAAGCATCCCTGTAAtgataaaataaagttaaaaaattaaaatgttctgtTCCAGGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387573 lncRNA upstream 8336 5541358 ~ 5541889 (+) True G327071
TU387473 lncRNA upstream 235636 5311231 ~ 5314589 (+) False acbd7
TU386838 lncRNA upstream 520435 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 560909 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 566545 4983473 ~ 4983680 (+) True G326458
TU387696 lncRNA downstream 52566 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 279689 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 288915 5842219 ~ 5842438 (+) True G327391
TU388624 lncRNA downstream 1094976 6648280 ~ 6708779 (+) True G328024
TU388766 lncRNA downstream 1396255 6949559 ~ 6961376 (+) True G328161
XM_026924674.2 mRNA upstream 2392 5546551 ~ 5547833 (+) True mrpl32
XM_026924170.2 mRNA upstream 57486 5415932 ~ 5492739 (+) True adam22
XM_026924167.2 mRNA upstream 57486 5415934 ~ 5492739 (+) False adam22
XM_026924168.2 mRNA upstream 57486 5415935 ~ 5492739 (+) False adam22
XM_026924169.2 mRNA upstream 64757 5415934 ~ 5485468 (+) False adam22
XM_026923902.2 mRNA downstream 12342 5565646 ~ 5583027 (+) True rnf144b
XM_026924003.2 mRNA downstream 31112 5584416 ~ 5591733 (+) True LOC113532582
XM_034297883.1 mRNA downstream 31583 5584887 ~ 5591733 (+) False LOC113532582
XM_026924676.2 mRNA downstream 40545 5593849 ~ 5603013 (+) True sqlea
XM_034298144.1 mRNA downstream 242858 5796162 ~ 5905417 (+) False si:dkey-122a22.2
TU387482 other upstream 211974 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 620071 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 626544 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1536687 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2980486 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 2348488 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 2834883 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3061769 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3215441 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 3215442 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile