RNA id: XM_026923975.2


Basic Information

Item Value
RNA id XM_026923975.2
length 3106
RNA type mRNA
GC content 0.41
exon number 33
gene id sycp2l
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9510608 ~ 9562189 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttatttaaaaatatgtaccTACAGTCTTCCCTTTTCAGCCCCTACCAACTGTAATTCTGTGATTATGCCCGTCCTTTCAAAGAAATTCATGCAGTTGTttgctgtgtttaatttttgcatTAGGCAAATTCCAACCTCTACTGAATGACCTAAAATTTGTACAGGAAGCTGCcatcggaaaaaaaaaatcacctcacaTTTAAGCCCCAAAACACTTTAACCACGTGCACGTGGCGCCATTGCTCTCAAATAGAGCGCACCTGTGTCCGTTTGTCTGTTGCGAGGTCTTCAGTTCGGAAATTATGAGTCTTTCAAGCAGACTGGAGGTTGCACTCGCCACCAACAATGTTACTTcagtttttcaatttattaCTGGGGAGAAATCAATGTCTCTGATCGACCAACTGGATGACGTTGCATGCAGGGATTTGcataaaaatgaattcaaaaatGTTACACTGATATTACGGGCGCTTGAACAAGTAATCTCCAAAGACGAAGACTGCATCAACCAACTGGTCTGTCAGGGGTTATTGGTCAAGATGTTAAATTGGTTTGAGATGGTTTGTGAGCATCTAAAGGTGCAGCAGAAACCAAACAAGGCTCCAGTGCGGCTCATGGAAGCGTTCTGTGAAGTGTCGATGaggcTTTGCCAGAGCAACGCTGAAGGCAGCATTAAGATTTTGGAGATTCTTATACTGAGGTTTGGAGCTGTTGTGATTGACCAAGATGTACATTTCAATCTTCGTCTAGAGGCCATTAAGacaataaattcaatgctggaCAGTGCTTCAAAAGAAACTCGTAAAAAAATATGTCAGTCTGATCATAGTTCTCTGCTaGAGGAGTTTGCTAAAGTGATAATTGATGTTGGTGattACGAAATGCAGGTGGCCATTTCTGAGGCACTCTGTCGGATGACACCAAAGAAACTAAGGGAGGAATTGGTTAGCAAGTGGTTCAGCTACAGAAGCTTTGCTTCAACTTTCACAACAATAAGGGTTAAAGAGTTTGAAACGGATTGTAGGATATTTCTGAATGAACTCAACAGCTATTTTGGGAGCTCAAGAAGagtgttttcaTATCCTTGCATAAGGGCTTTTTTAGACACCACTGAGTTGTTTAAACCTGAGGATGAACTCTTGCAGAACTTCTGGATAGACTTCAACATTGGGACATCTTGCATTGGCTTCTATGTAAATGACCCACAAGAAACCCTGTGGGAACTTATTCATTTGCCTAAAGAAGCTGTCAGTTCATACAACCTACAAGAATGTGATAATCAGAAGATCTTGAGCATTCAcatgtcacttcctgtgtgtcATGGAAAGATCACTGGGAAAATGGTGCAGGTTACCTTTGACTCTAGGCATGATATTCAAACTGCTGTGAACAAAGTCTATGCTGGCAGAGATGAATTACAGCTGCTAGAGACAACAAAGCATACTGTATTTAGTCAGGAAGACTCAGGAATTCCAGCTACTCCGACTGAAATTAAACAGACATTCATGAGtcCTTCTATCACAAAGGCTACAAGAAGAGCTCAAGGTTCTTTTGCTCTTCAGAGTGGGCCTGGGAAACTGCCATCACACAAATGTAGGACATTCCCAACAGAAGACAAATATTCTCTAAACACCACCATAAATGGTTCAGACACAGAGGTGGCACAGGCTAAAGCTGTTGTCTTTAGTCAGTCTGTCTCCTCTAATGGgtCTGTCAGTTCTGTTAAGTCCTTTCCATCTGCAAAATCTACACAAAAGagGAAAATTAGGATCTTTCACTCTGAAAGTGACAGCTGTCTGTCACCTGGTGAGAGATCTTTGCTCAGACACAAACTTCAATGTGACTacacaaggaaaaaaacacgGCTGAAAAGTAAACTCAAAGTTCTCCCACTTTCCTCACCAAGTAGCAATGAAGAGAAGTACTTTAAGGAATCCACTCCTAAATACAGaccggagagagagaggggtgaaGGAATGGCTGGGAAGCAGAATCTGGATCTTTCCCACCAACCCAAGAAGTCCATTCTGGATTCAAGGTTTCAAGACAAGACAATTCTTGAAGATTCTGTCTTCACAGAGGTGGAACCTGTTGGATCTATTGAGGTAGACAGTGTAGACAAAGTACCATCTATGCCATCAGACAGAAGACTACTGGCATCGGCAGAATTGAATGTGGGTTGTGATGTTGGAGGAGAGGAGCAGCTCTCATTCTCTACACTCAAACCCAGAAAACTTTCTATCTCCCCCTCACTGGAGAGAGCTAAGGaagcAATAACCCAAGCATTGATGGAAGATGAAGAATCTGAGGCAGAGTTGAGTTCTGGAGTCATGGCTGCCTTTGATTCCTTTAAAGCTCAGCTTAGAGAACACTTCTCTGTAAGGTATAAGAAGACCGaaacaaagtcactgagatcattgACTGACTGCCAGAAATCTGTATCCTCTTTGCTAAAAACAGTGCATGATCAAAGGCTTATTCATTTGGAATGCTTCCAGAACGCTGTAGTGCAGCAGCTGGGTCAACTGGAACAGAACTGTCTTTCCTTAAAGAACATTGAGAGAGAAACTGTGGGTTTTTGGCGGTCGGTGTCTGATACAGTGAAAGCGTTCTGTAATAAACAGCAAAAGAGGTTGGATTCTCTAGAATTACTCAGAGGGGGGGTCCAAGCGCACCAGACAAAAGCAGAGGAAACAGAAGCAATGCCTAGCATGTCCACAGCAGTTCCAGTTGCTGAgaccaaaaataaattaagagaTTGAAAATTTTATCCAACGACCACAGATTCCAGCTAGAAACCACACATAACTATTAAAACCATTATTAGCATTGCATaagtgaaatatttgtgaatTGTATGACTTGTATTCAAATGTATTATCTTTATATCAATTtatatgtttacatgcaaataCAATTTGTTTAAATCTTGTTACATAATGTGTGAAAAAATCTAGTGAAGACAAGCATGCACAACTAAGTGACATTTACCTTGTCTTGTAATGGGGGGAAAAGGTATTTTTCTTGCGACACATTTTGCATCCCATTATAAGAAGACTGTAGACTCTGAAAGTGTGGCAATTAAAAAAGACTCAAACTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390455 lncRNA upstream 19064 9491274 ~ 9491545 (+) True G329581
XR_004576957.1 lncRNA upstream 27792 9472616 ~ 9482817 (+) True LOC117595781
TU390448 lncRNA upstream 30056 9480339 ~ 9480553 (+) True G329574
TU390393 lncRNA upstream 157876 9352150 ~ 9352733 (+) True G329522
TU390394 lncRNA upstream 174801 9335186 ~ 9335808 (+) True G329523
TU390437 lncRNA downstream 13189 9565693 ~ 9568672 (+) True G329564
TU390569 lncRNA downstream 22885 9575389 ~ 9575704 (+) True G329685
TU390573 lncRNA downstream 48104 9600608 ~ 9600840 (+) True G329689
TU390580 lncRNA downstream 124479 9676983 ~ 9679949 (+) False gnal
XR_004576982.1 lncRNA downstream 143155 9695659 ~ 9714739 (+) True LOC117595805
XM_026923980.2 mRNA upstream 59266 9438298 ~ 9451343 (+) False tmem14ca
XM_026923979.2 mRNA upstream 59266 9438300 ~ 9451343 (+) True tmem14ca
XM_026923983.2 mRNA upstream 59266 9447968 ~ 9451343 (+) False tmem14ca
XM_034298005.1 mRNA upstream 59266 9448135 ~ 9451343 (+) False tmem14ca
XM_026924967.2 mRNA upstream 95227 9400242 ~ 9415382 (+) False eef1e1
XM_026924861.2 mRNA downstream 69175 9621679 ~ 9678201 (+) False gnal
XM_026924859.2 mRNA downstream 69176 9621680 ~ 9687491 (+) True gnal
XM_026924215.2 mRNA downstream 303678 9856182 ~ 9938468 (+) True cdh19
XM_026924216.2 mRNA downstream 303678 9856182 ~ 9938468 (+) False cdh19
XM_026924217.2 mRNA downstream 303678 9856182 ~ 9937252 (+) False cdh19
TU390118 other upstream 654333 8853328 ~ 8856276 (+) False bmp6
XR_004576948.1 other upstream 691342 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 695049 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 844773 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 1025776 8388187 ~ 8484833 (+) False LOC113532774
TU390686 other downstream 239180 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 878829 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 1042698 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 1321705 10874209 ~ 10984209 (+) True acad11
XR_003404155.2 other downstream 1321705 10874209 ~ 10984209 (+) False acad11

Expression Profile