RNA id: XM_026923977.2


Basic Information

Item Value
RNA id XM_026923977.2
length 2896
RNA type mRNA
GC content 0.45
exon number 15
gene id mak
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 9451374 ~ 9472412 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAGAGTCCTCGTTGCCATAGAGACGATGGTACACGCCTTATCTGGACAGACGAGTGAATTTAACCTTATCTTACACACAACTTCACTATCTTCTGTCCCAGACAACGGAAAAGGGCGAGCAGTCATAGGAGATGGCCTGAGAAACACAGTTTGCGCAGTTGTGTATGCGTGAGCTGtattcttttccatttgttttcttttccatctGGGAGAGGGAGGGAGCTGAATGAACAAGGATGAACCGCTATACCACTCTGAAGCAGCTGGGGGATGGTACCTACGGCAGTGTGCTTATGGGCAGAAGCAATGAGTCCGGGGAGCTGGTGGCCATCAAGAGaATGAAGAGGAAGTTTTACTCCTGGGAGGAGTGTATGAACCTGAGAGAAGTGAAGTCACTAAAGAAACTGAATCATGCCAATGTGGTGAAACTAAAGGAAGTAATCAGAGAAAATGACCAATTGTACTTCGTCTTTGAGTACATGAAAGAGAATCTCTACCAGCTGATGAAAGACAGAAACAAGTTGTTCCCTGAGTCAGTCATCAGGAACATAACCTTTCAGATATTGCAGGGGCTAtcatttattcataaacatgGATTTTTCCATCGGGATATAAAGCCAGAGAATCTGCTTTGTATGGGTCCTGAACTGGTGAAAATAGCAGACTTTGGTCTGGCCAGAGAGATCCGTTCTCGGCCTCCCTATACAGACTATGTCTCCACACGATGGTATCGCGCTCCAGAGGTGCTTCTGAGGTCATCTGTGTACAGCTCTCCTATAGACATGTGGGCAGTGGGCTGCATTATGGCAGAGCTCTATACCTTACGACCTCTTTTCCCAGGCAACAGTGAGGTCGATGAGATCTTCAAGATCTGCCAGGTTCTTGGCACAGTGAAGAAGACGGACTGGCTGGAGGGTCATCAGCTGGCTGCGGCAATGAACTTCCGCTTTCCTCAGTGTGTTCCCACACCTCTAAAAACCCTCATCCCCAATGCCAGCAATGAGGCCCTGACACTAATGAAGGATTTGCTGAATTGGGACCCGAAGAAAAGGCCAACCGCTGTGCAGGCACTCAGGTACCCCTACTTTCAAGTGGGCCAGGTGCTGGGACCGCGGCCTCAAACCCCTGACCTTTGTAAGTCGCAGGTGAAAACGGCTCATCTCAACGAGACCAAATCTGAGCTGCAGTCAGCCTCTGAACCAGCCCTGCACTCTCAGGCTAAGGCCCAGGGCAGGaattcccatcagcccctgcagcCAATCTCTCTGCCTCAGGCCCCCATTCAGGCAAACCACCAAGCTGAGCCTCTAGCACTCAATACACAAAAGAGGCCTGTGGGAAATGAGAACAGCCTGATGGGACTGAAAAGTGGGCGGAGACGCTGGGGACAGACCAAACTCTCAGACAGCTGGGACGAGTCAGATCCCTCAGACACAGCTGCAGCCAACTCCAAAAAACCCAGCATGGGAGCAGAAGAGAACAAACCTATGAATGAGTTCACTTCTGAGCCAAAAGACCAAAAGCCTATTTACACTTTTAGCAACGTCACGAAGCTACCGAGTAGCATCAAATCAAACTCCGGTCTGCAAAGCACCTGCTCAGCCCGACATCATTACCTGCGGCAATCGAGATATCTTCCTGGTTTGATAAGTAAAAGCTCCCCGTCCACTGTGGAAAAGGAGCTCCAGAGGGACCTGTGGGACAACTGGTCAACACTTTCAAAGAAACCCCTTGCTCCCATTGGAGGAGCCCCAGTTACCCGAGTCACTCCAGGGAACTTTATTAGCACTACATACAACCTCTCTGGAGGTTATATTCCATCTTTCCAGAAGAAGGAGGTTGGATCTGTTGGCCAGAGGATACAGCTTGCACCAATTGGAAACCAGCAAGCACtTGATCTCTCCACCACTGCTGATTCTAAAACTggcaaaacaaaatatataaagccAAAACCTGCTGCTTCCACTTCATTAAATGCAAGTACTGAAGATGCCgatgggtggaaaaaaaaatctcaagtcAAAGGGACAAGCTACTCAGTCCTGGGGAAGAATTCTGGCAACATCCTCCCTCGTGCAGCTCCTGTCCAACCTGTCCATGGTCGAGTGGACTGGGCAGCGAAGTACGGAAGTCATCGGTAGCACATCTTCAAATCTTTACAGCCTCAGCTTGTGCTAATCTTAATGGCTCCATCTCCTCTAGCAGAGAAGTTTTTAATGTCTCAAAGCCCACTGTGCAGATTATTTTGTAGAAAATGTAATTACCATTTTTGATATTCAAGATATTTGATATTCAAGATATTCATCCTAGAACTgaaaatttttcttttgttttctttatcgACTGGGTGAAAATATCAATCGTATTTTAGAGTTGGGCTGTTCATTCTAAACCGGATCTTCTCTTTTTAATCACATAAACACAAAGAGGTCATGCTTGTGTGAGGTGCCTTTAAAATTAGgtacatttattattgatttttgaGATCAGTGTAGATTTCAGAACATATGAATTCACTGTTTGAAGGGACAGTCATTTTTAGGGCCTTCTGCTGGCTGTGATGTACAACTGCATTGAAAAGCCTTCCCATTCCCACAAGATTCCAGCTGTTGTTAACTTTGAATATGATTACTAAAATCATAAggcttttaaaaacattgaaaCATTACAAACCTCACCTTTAATGCCACTGGAATTCCAGTCAGCCAACTCAGATCTGACTACTTGTTATCCAAATAACAACctgcttttttcttcctcttataagCCACTTCGGACCAACACTAGATTTGTGTCATATCAGAATATATTGTAGAAAATCAAAATAATCTGGTTTTAGCTTGAAACAGTTTTGTAagtattttaaaacatgttgGATCCTGTggtatgaaaata

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390402 lncRNA downstream 101538 9349466 ~ 9349837 (-) True G329531
XR_004576977.1 lncRNA downstream 369592 9057215 ~ 9081783 (-) True LOC117595799
XR_004576976.1 lncRNA downstream 400473 9049240 ~ 9050902 (-) True LOC117595798
TU390329 lncRNA downstream 440710 9010461 ~ 9010665 (-) True G329461
TU390299 lncRNA downstream 509017 8942137 ~ 8942358 (-) True G329447
TU390570 lncRNA upstream 102972 9575384 ~ 9575695 (-) True G329686
TU390617 lncRNA upstream 149299 9621711 ~ 9622672 (-) True G329722
TU390658 lncRNA upstream 245750 9718162 ~ 9719292 (-) True G329756
TU390656 lncRNA upstream 247253 9719665 ~ 9723670 (-) True G329755
TU390657 lncRNA upstream 247253 9719665 ~ 9723670 (-) False G329755
XM_026923926.2 mRNA downstream 484200 8962772 ~ 8967175 (-) True bloc1s5
XM_026923927.2 mRNA downstream 484200 8964417 ~ 8967175 (-) False bloc1s5
XM_034298134.1 mRNA downstream 496181 8944385 ~ 8955194 (-) True txndc5
XM_026924128.2 mRNA downstream 614544 8830847 ~ 8836831 (-) True si:dkey-197c15.6
XM_026924162.2 mRNA downstream 785520 8652432 ~ 8665855 (-) True cavin1b
XM_034298196.1 mRNA upstream 31725 9504137 ~ 9510189 (-) True gcm2
XM_026923982.2 mRNA upstream 80183 9552595 ~ 9572205 (-) True elovl2
XM_026924858.2 mRNA upstream 215143 9687555 ~ 9717566 (-) False mppe1
XM_026924857.2 mRNA upstream 215143 9687555 ~ 9717564 (-) True mppe1
XM_034297837.1 mRNA upstream 323922 9796334 ~ 9819533 (-) True LOC113532851
TU389089 other downstream 2065069 7378780 ~ 7386306 (-) False sec61b
TU388974 other downstream 2388947 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 3021443 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003403372.2 other downstream 3472996 5829474 ~ 5978379 (-) False zfpm2a
XR_003404173.1 other upstream 812422 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 1050320 10522732 ~ 10523263 (-) True G330185
XR_003404157.2 other upstream 1450714 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 1609856 11082268 ~ 11083151 (-) True G330379
TU392350 other upstream 3204169 12676581 ~ 12677933 (-) False LOC113541288

Expression Profile