RNA id: XM_026923985.2


Basic Information

Item Value
RNA id XM_026923985.2
length 2657
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC113532572
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8184092 ~ 8190259 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGAAGTGTTTCTGCGCGATCATTACCGTAATACCCTGTATACACGCGAGCAGAATCTGAAGCGCGGATGTTTGACCTGCAGAAGTTCCCACAGAAGAGGAGGAGGCCAGACTCAGTCCGGCGGAAGCTCCTGCTCAAGACCGTCGTTTTCCTGctgtctcctttcttttctaCGCCTTTTCCAAACGTGTGGCttctcagattattattattattattattattattattattattagcttatGACCTGACGATTTATGGTTTTGAATGAACTTTTGTCCACAAACTGAGGAGAAGGGAACACACTGTAGGACTCGAAATTTCTTCCAAATGGATATTAATACCacaaagctgctgttattttTTGTAGCTGGAATTTTAGCAAAAGAGAACACTGAGGTGAAAGTCACATGCAGTCCTCGAGGTCTGGAGTGTAATAAGACAGCTCTTCACCTAGAGATGGAGGAGTGTGGAGGACGCTTCAAGAATGATATGGCTGAGTTGGACCCCCAGAACTGGTGCAActtaacacattttattagTGAGTACCACTACTTTACATCCTGCACAGAGAACAATGCAGTGAAGATCGGCTGCTTTTGGCCCCACCCAGTGGTAGAGCACTATATTATCCTTATCCACAAACAATTCTTTTCCAACTGCTCTTATATACCCATGGCCTGGACTGGCATTAGAGAAGACACTTCCACCTTAACCATACATATTCTTATTATAGTTACAGTCTTTCTAACACTAGCCATGGTCACATCAGTGGTATGGTGCAGCAGGCAAAGGTAGTACCTTTAGGTTGAAAATGTTATGTATACTGTATGCAAGGCCTGTTTTACCCAGAGTACCACTCACACATTAAACCTGGCTTCATAagctttgtatttatatttaaagcatttttaaccaaagtgacttacaaatgagaCAAGATGCATCTGTGCAGTTGAGGCCTAAAAGCCTTGCTGAAGCACCCaaaagtggcagcttggcaatactgggatttgaactcacagcctCTAACAGGGCTAATGGTAGTTTAATTCCAGCATTCAGTGGTACAGGGCGTGTAAATAGTCATAATCACTGGACTAATCTGGTTTAAATTGACATTTCAGGAGATATTGTTGGAATTTTTATTGAATAACCATGCACAAACCTGAACCTAAAATTATAgacatgtaaatatatacaccCTACAGTGTACTATGATGTGTTATCTGTTTTCCCCTTTTTGCTTACTTCCAAAGGAAAATTGTTGATAACAAGGAATGGGACAGAGAATAAACAACCATAAACTGTAAAATTCTAAGAGAACAGCAAATGGATAAGCCTGTACTATGTATTGACTTGAATTTACTATGTGAAAAGGTTCATGGGAGTGATTAGGACATGGTGAATGTGTATCGAATAGTGAGTATGAACATTATTTTCTGTATAACAAATAAAGTATGACAAGGTGCATGGCAAGGAAAAGTTTTGCGTTGTGAGTGACCTTAAGACACACACTCAATGGAGTAAATTATTCCCAACTCTGTTGCCTCATGCCCTTAATGAATGTCATACAAGGCACTGGTCCTTCAGACTAAACTCTGAGAAGGACAAAATTCTTTCCCAGAATCAGCAATGAAACAGTGGAAATAGGCTAGCTTGAGGTACAAAAACTGTCACAATTTTGTGCACAATTTCTTGTCTCATATATACATTATTGTAAATGGTGCCACAATGTGATCATAGATGTTGTGACATGTTTTGATAACTACATACACTATACTCATATActtggaatagaatagaattatATTCTAAAGTAAATGTGAATTGAGGGTAAATATAGAGGGTACAACATAAATATAGAGATACTGTGTATGCACATAGCATATAGCTTGTAAATCTCTTTATCCTTTTctgctctgtctctttcccaCTAACGTCAATTTTTAGCCCTTTCCCACACTCACAAGCAGACAATCCAAACAGGATGTCAACCCCCACTggccttccttccttccttttccatATTACTGCAACTGATATGGCACATCTACGCAGACATATTCCTAACCCCCCAGGGTTACAAGGCctacagtataaataaaacctcatgaccttaattatttttattgcagtgGATGACACAGCATTTGTACTCAGTCATTAACCTTTTGAAACAAATAACAACGTTTTATGATTAATAGCAagctaaacattttaatttgagTCCTGGCTTTCCAAAAGTGGGGTTTCAGTGCTATAATCACATTACTATCTtacaataatatttatgatACATAAATAAGCCCCAGGGTTTCAAATATCTAATTTGCTTTTGAAATGTTGTTGCTCTGCTACGTGAAGtacaatttcattttatatgatGTGTTTTCTGTAATACAGCATTATACAGTGTGGGCTGAAAATGTTAGAACTACTGCAGCAACATGCCATTAAAATGAGAAACAGTTTCAAAGgaagtttttctttaaaacaatgaAAGTCCCAGGCATTAATTTCCTGTTTATGCTGATTCCAAATTTAACTTTGAATAGTGCCAAGCTAAACAGTCTTACATTTGCAATGGAGCTAATATCTAGCTTATTTCAAAGCTGTATTTTGCACTGTGAGAAATAAACTCAATATAAACACA

Function

GO: NA

KEGG:

id description
K08449 RAMP3; receptor activity modifying protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389478 lncRNA upstream 47929 8135517 ~ 8136163 (+) True G328755
TU389477 lncRNA upstream 48637 8135080 ~ 8135455 (+) True G328754
TU389473 lncRNA upstream 78630 8105262 ~ 8105462 (+) True G328750
TU389297 lncRNA upstream 525013 7657141 ~ 7659079 (+) True G328620
TU389095 lncRNA upstream 791644 7392241 ~ 7392448 (+) True G328441
TU389722 lncRNA downstream 26187 8216446 ~ 8216654 (+) True G328944
TU389774 lncRNA downstream 67266 8257525 ~ 8264036 (+) True G328995
TU389833 lncRNA downstream 146093 8336352 ~ 8336582 (+) True G329042
TU389845 lncRNA downstream 184695 8374954 ~ 8378734 (+) False osr2
TU389908 lncRNA downstream 462177 8652436 ~ 8665836 (+) True G329111
XM_026924274.2 mRNA upstream 27799 8140082 ~ 8156293 (+) True cdh17
XM_034298213.1 mRNA upstream 50517 8111413 ~ 8133575 (+) False rad54b
XM_026924866.2 mRNA upstream 50517 8111415 ~ 8133575 (+) True rad54b
XM_026924869.2 mRNA upstream 63192 8115550 ~ 8120900 (+) True LOC113533047
XM_026924322.2 mRNA upstream 88583 8072467 ~ 8095509 (+) True virma
XM_026924837.2 mRNA downstream 5982 8196241 ~ 8214829 (+) True LOC113533036
XM_026924062.2 mRNA downstream 28281 8218540 ~ 8250823 (+) True LOC113532619
XM_026924063.2 mRNA downstream 28281 8218540 ~ 8250823 (+) False LOC113532619
XM_026924479.2 mRNA downstream 74760 8265019 ~ 8268963 (+) True mrpl17
XM_026924756.2 mRNA downstream 95984 8286243 ~ 8298470 (+) True pop1
TU389428 other upstream 281484 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 2845841 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3253938 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 3260411 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 4170554 4011410 ~ 4013538 (+) False hamp
XR_004576973.1 other downstream 197928 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 424814 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 578486 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 578487 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 663069 8853328 ~ 8856276 (+) False bmp6

Expression Profile