RNA id: XM_034298266.1


Basic Information

Item Value
RNA id XM_034298266.1
length 2327
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC113532591
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3917415 ~ 3935176 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGATCTTTTTAACCTTTCTGCTCAGTGTGGTCGACCTGAGCTGGGAGATTGTAGAAGATTAATAGTTTCACTTCATATGTTTTGTTCTCgacatcctcttctgggtgtcACTGTATCATGGGGTTATAAATCGTTGCAGTATACAGATGTAGAAGAGCAAAGACAGATAGTACTAAGTGTGTTTAAAGGGTGTTCAGTATGAGCCGTGAGTAAAAGGCCTGGGATGAGCAACAGGATATGGATTATGAGTAGTTTTTctgtacaaatctacagtatccagGCCAGACTCCAGTAATGGATAGATTCGGGATACTCAAGCTCTTCATTTCAGTTTCACTGCTTGGCGGTGTGTGTCGCTGCTGGGAGGTGCGTCTGCAGCGATCAGTCACAGCCATCAAGGGTAGCTGCGTGTTTGTGCCGTGCAGCACTGACTCTTACAGTAAAGTAATCTGGTACAAGTATAAAAGGGTAGGCTACCCAGTTGTGTACTCCCAAGACACCAGCACCATATTGGATGAGTTTAGAGGAAGGACATCAGTCCCAGGAAATGCCCAAGCGGGAAACTGCACTTTAAAGATTGACAACGTCCGGCAACAAGACAGCGAGGTGGACCTGTACGTGTGGATCTGGAAACATAATGGGAATGATAAAGGATTTTATGACCAAAccatcaaaataaaagtctTGGAACCTGTGGATCCTCAAATGTCCGTGgataaaacacagacaaaggGGAAGGCTTTCACAGCAACATGTAAATTCCGTTCTTCCTGCCCCTCACCTCCACCACAGATTGCCTGGATGGGTTTGCAATCTATTTCTAATGTATTGACCCACACGCAGGACGGGGAAGGATTATGGGTAACTGAGGCCACTGCTCAGTTCAAAGTAACTCACCAAGACCAGGCCACACATCTCAGCTGCAAGATTGTTCACAGTGGACAATCTTTATCGAGTAATTCAGTTTCTCTCAACATCTTATATGCCCCCACGGACCTGAAAGTAGATTACATAGGAAGCAGCACTGTTGTTGAGGGTAGCAAGATCTCGCTTAGATGTACCAGCAAGGGCAATCCTGCACCCATACAATACGAGTGGCTCGTCACCCAAAACAACACCACCATCCGCCACACAGGAAGTCCTGTTGTCCTTCAAAACGTCAGGAGACGCACGTCCGTTTCCTGTATCGCCACTAACTCCGTCGGAAAGGGCGAATCAAAGCAGCTATCACTCGATGTCCATCATGCCCCCACAGATGTGAAAGTAGTTTACACAGGAAGCAGCACAATCGTCGAGGGTAACAAGATCTCACTTAGATGCACTAGCGCGAGCAGGCCTGCACCAACACTCTATGAGTGGCTTGTCACCCAAAACAACACCACCATCCACCACAAAGGAAGTACTGTTGTCCTTCAAGATGTGAAGAGAGACACGTCTGTTTCCTGCATTGCCACTAACTCCATCGGACAGGGTGAATCAAAGCAGCTATCACTCAATGTCCATTACTCTCCGTCCATCTTGCCGGGCTCATTTTGCTCCATGCAGAAAGGaacattaaagtgtgtgtgtcaagcAGAGGCCAAGCCAAGTGCTGTCATCTCTTGGACCATAGATGGCAGCAGTGTACTTTTTCCACTCTTCAACACCACGACCCAGGCCAATGGAAGCATGACTGAGTCAGAGTTGACCGGACCTCAGGGCCACAATGTCGCCTGCACAGCAAGAAACAGTGAGGGCACGGCATTTACCCAGATATCTGTCCACTCTGAAGGGGATGCTTCAGCAGTGCCGGTGTCTGTGGTGGCTGGGGTAGCCGGGGTGTGCCTCGTCTTAGGACTTGCTGTGGCAGCCATCATGATTTGGAAAAAGAGATGCCATGTAGAGCCAAGTGGAGACCTCAGCACTGGTCAGAATGTGAAGCCTGATAAAATATGCCATGACTACCATTTAGAGTCAGATGAAGACCTGTATGTTAATGCAGTGCATGGTCACCAGGCTTATGACGATCAGACAAAGAGTCTTGTATCTATGAGAATTATGGTAAAACGTCCTGAGTCATGAAGAGTCAAGATGGCGACGCATTTATCTGAGAACGTTTCCTTCACTAATGCAGTGGTAGTATTAAAATTTCTGAACTGAGAATTAATTATGTTTATCTTCGCACTGTCCAAACTGCAAATATATGACAAGCACAGGGTTTATttataaatagataataaataagcaggctttttttttattaattaaatttgtacTTTTAAGTATGTACTTTTGAATATCTATTTTTGTGTATAAGACACAACTTGAAATAAAGGATtgcttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386457 lncRNA upstream 37133 3880677 ~ 3880941 (+) True G326131
TU386344 lncRNA upstream 215921 3701334 ~ 3702153 (+) True G326023
TU386119 lncRNA upstream 595744 3319917 ~ 3322330 (+) True G325815
TU386041 lncRNA upstream 657893 3258929 ~ 3260181 (+) True G325754
TU386009 lncRNA upstream 709112 3139312 ~ 3208962 (+) True G325730
TU386508 lncRNA downstream 10206 3945382 ~ 3946133 (+) True G326178
TU386524 lncRNA downstream 32356 3967532 ~ 3973002 (+) True G326193
TU386648 lncRNA downstream 384039 4319215 ~ 4359118 (+) True G326288
TU386632 lncRNA downstream 413605 4348781 ~ 4351847 (+) True G326281
TU386679 lncRNA downstream 456408 4391584 ~ 4394784 (+) False hmgn2
XM_026924488.2 mRNA upstream 26171 3881971 ~ 3891903 (+) True nr1d2a
XM_026924761.2 mRNA upstream 39550 3849062 ~ 3878524 (+) True ube2e2
XM_026924357.2 mRNA upstream 195305 3714016 ~ 3722769 (+) True rab5ab
XM_026924356.2 mRNA upstream 195305 3714016 ~ 3722769 (+) False rab5ab
XM_026924247.2 mRNA upstream 447862 3425575 ~ 3470212 (+) True LOC113532711
XM_026924032.2 mRNA downstream 386 3935562 ~ 3940027 (+) True LOC113532598
XM_026924031.2 mRNA downstream 5209 3940385 ~ 3945230 (+) True LOC113532597
XM_026924054.2 mRNA downstream 45252 3980428 ~ 4002436 (+) False LOC113532613
XM_026924053.2 mRNA downstream 45254 3980430 ~ 4002436 (+) True LOC113532613
XM_026924670.2 mRNA downstream 76204 4011380 ~ 4013531 (+) True hamp
TU385671 other upstream 1348335 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 1703775 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 1703813 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 1773563 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 2754460 1118268 ~ 1163614 (+) True G324258
TU386582 other downstream 76234 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 985804 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 989610 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 1397092 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3966616 7901792 ~ 7902608 (+) False LOC113532663

Expression Profile