RNA id: XM_026924041.2



Basic Information


Item Value
RNA id XM_026924041.2
length 989
RNA type mRNA
GC content 0.44
exon number 8
gene id tmem147
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5144970 ~ 5150227 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TAGGCAAATCCGGAACTCTtgtttgtgctgtgttgttGAAGTCCGGAATCTTTTCAATGAGAAACCCGTCTCTACTAGAAGACATTTCATTAAGAAACCTCAGCGGTCATTCGGTCCAGGAGGTGtatctttcttttattatttcttcttgAGAAATGACGCTTTTTCATTTCGGGAACTGTTTTGCCCTGGCTTATTTTCCATACTTCATAACATACAAATGCAGTGGATTATCAGAATACAATGCATTCTGGAGATGTGTCCAAGCAGGGGCCACTTACCTCTTTGTACAACTATGCAAAATGCTGTTCCTTGCTACATTTTTTCCTACCTGGGAAGGTGGTGCTGGTGTATATGACTTTGTCGGGGAATTTATGAAGGCCACAGTGGACATGGCAGATCTGCTAGGGCTTCACCTTGTCATGTCCAGAAACGCTGGGAAGGGAGAATACAAAATAATGGTAGCTGCCATGGGCTGGGCCACAGCTGAACTGGTTATGTCAAGGTGTATTCCTTTATGGGTCGGGGCTCGAGGGATTGAGTTTGATTGGAAATACATCCAAATGAGCTTCGATTCCAACATCAGTTTGGTTCACTACATCGCCATGGCTGCAGTAGTGTGGATGTTCACGCGGTACGACCTGCCGAAAAGTTTCCGCTTGCCAGTGACTGTGCTGTTGGGGCTCTGTGTGTACAAGGCATTTTTAATGGAGTTGTTTGTTCATGTGTTTCTCCTGGGCAGCTGGACGGCTCTGTTGGTGAAAGCGGTGTTAACAGGTGCCATCTCCCTCTGCTCGCTCTTCCTTTTCATCACACTGGTTCACAGCAACTGAGGCTTTTCTTATGTTGCCACACATTCAAGTGTTTTGTAAGAAAACTCCATATTAAGTGTTTTGTCTGTCAATGGGGCCAGTgagatgatgtcagtgatgtccgttgtattttttatttgtctttataatgaattaaaatatacaaaaataacccAA

Function


GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU386838 lncRNA upstream 115180 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 155654 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 161290 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 220334 4924178 ~ 4924636 (+) True G326440
TU386800 lncRNA upstream 340911 4803837 ~ 4804059 (+) True G326429
TU387473 lncRNA downstream 161004 5311231 ~ 5314589 (+) False acbd7
TU387573 lncRNA downstream 391131 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 455643 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 682766 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 691992 5842219 ~ 5842438 (+) True G327391
XM_026923906.2 mRNA upstream 4163 5111073 ~ 5140807 (+) True nkd2b
XM_026924631.2 mRNA upstream 39548 5097141 ~ 5105422 (+) True trip13
XM_034298188.1 mRNA upstream 39548 5098409 ~ 5105422 (+) False trip13
XM_034298189.1 mRNA upstream 39548 5098584 ~ 5105422 (+) False trip13
XM_034297834.1 mRNA upstream 88303 5046966 ~ 5056667 (+) True cep72
XM_026924956.2 mRNA downstream 39791 5190018 ~ 5203404 (+) True ncam3
XM_026924957.2 mRNA downstream 39791 5190018 ~ 5203404 (+) False ncam3
XM_026924958.2 mRNA downstream 39791 5190018 ~ 5203404 (+) False ncam3
XM_034297885.1 mRNA downstream 78350 5228577 ~ 5234049 (+) True LOC113532508
XM_026923897.2 mRNA downstream 78350 5228577 ~ 5234049 (+) False LOC113532508
TU386814 other upstream 214816 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 221289 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1131432 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2575231 2565700 ~ 2569739 (+) False G325435
XR_003403390.2 other upstream 2930709 2210222 ~ 2214261 (+) False LOC113533074
TU387482 other downstream 182041 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2751565 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3237960 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3464846 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3618518 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile