RNA id: XM_026924042.2



Basic Information


Item Value
RNA id XM_026924042.2
length 2329
RNA type mRNA
GC content 0.47
exon number 13
gene id ica1
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2554120 ~ 2563081 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TGCGTCGGTGTGACGTCATCACGCACAAGCATCTGCGGCGGTTTGACAGCGTGATAACCGGAGGAGTGAAAAACAGAGGAGATGCTTTAAAAAACCAAAACGCTACAGTTTCAAACGCACAAgCTCATTTGGAGACATGGACAGTGGACACTAtGGTTATGCCCGGGAGTACTTTGATCGCTTTATCCAGAGTCAGGACTCCTCAGTTGTGAATAAATTTCAGCAGAAATACTGGAAGACCAAACAGACGCTGATTAAAGTGACGGGAAAGAAAGAAGACGAGCATGTGGTCGCCTCGGACGCAGACCTCGATGCCAAACTGGAGGTTTTCCACTCGGTGCAGAGGACATGCATGGAGCTCCTCAAAGTGATAGAACAGTACCAGAGGAGACTCTGTCTTCTGTCTCAGGAGGAGAACGAGTTGGGGCGCTTCCTGCGCTCTCAGGGCTCTCAGGACAAAAGCCGAGCGGGGAAGATCATGCAGGCGACAGGGAAAGCGCTCTGCTTCTCCTCTcagcagagGCTGGCGTTGCGTGTCCCGCTCTGCCGCCTGTACCAGGAAGTGGAGACGTTCCGCTACAGAGCCATCTCAGACACGTGGCTCACCGTGAACAGGATGGAGCAGGCGAGGACCGAGTACCGTGGAGCTCTGCTGTGGATGAAGGACGTCTCGCAGGAACTGGACCccgacacacacaaacagatggaGAAGTTCCGCAAGGTTCAGGCTCAGGTGCGTCTCACTAAGACCGGCTTTGACAAGCTGAAGAACGACGTTTGTCAGAAGGTGGATTTACTGGGAGCCAGTCGATGTAACCTGCTCTCTCACGTCCTCACTAACTACCAGacTACCCTGTTGCATTTCTGGGAGAAAACGTCTCACACCATGGCCGCCATTCACGAGAGCTTTAAAGGCTGCCACCCGTACGAGCTCTCAGCGCAGAAGGAGAATAAAGGATCTGATCTGGGAGCAAAGAAAcggacaaagaaaaaaaacaagatgaaaaCAGAGGAAGAGGGATCGAGTCCTGCCGTAGAAGACACGCTGATTTCAATAGACGATGAGGATCTGAATAAGGACACGAATCAGTCAGGCGTGTGTTCAGGAGGCGGTGAGGAGCCACCGTGTGGCgtcagagctcaggagaaggACGGACTGAGCGTGCTCACTGACATCCTCAGCTCCAGCTCAGTGGAGGACGGAGACTTCTCTCGAGAGTGGAGGGACGTGTTCGGAGAGGACGAGAGTGTGGATGGAGGGGCATCTGCGGTCACAGATGCTCAGCTTGAGGACGAAGAGGAGGAGACGGCTTCATTCTTCCTCCCATCACAACTCCTCGACCAGAACATCCACAACCTGCAGTCTGCAGTGTCGGGATGGATTATGGGTAATTCACAAAGCTCCTCAGGACCGAGTGATCAAACTGCGGGAGCCAATCAGATCACATCCAAACCGACAGCAAGAGacACCAGTGAAAGTGTGAAGGATCGCTCTGCATGGTTTAACCTGTTTGCTGATTTGGATCCTCTCACCAACCCTGACGCAGTCGGCAGAACAGACGAGGAGCACGAGCTCTTTACTGCATAAGAGCAAAGTCCTTCTAGTAAATTCTACCCACTCGGCAGCCATCTTAGTGCAGCTCATTTAAATGTCATCTACTTAAAATGAGGAGAGACGCATATACCAAAAATGGATCaactacatgattgccatttttAACACCgatttaaaatgaaagttaAATACTCACATGAAGTGGACTTCGGctcaaataacacaaaaacgCCCACATTTTGTCAGGTAGCTACATTGCTACATGTTGTTAGCTACCAAACATTGATTAAATCTGGGATTGAGTGGGAATTTACCAGTTCTTAGTTCCCTAACATTTCTTTACACTATAATAAGaatatttcatacatttcatagaccttttttttttcggaTACTGaaggaggtttaaaaaaatcactatcGTCTTGCTATAACAGCTGCGTGAATGATCTAATCATTCCTTATGCTTTCAGCTTAACATTTGTGCAGTTAAGTATGTTTTCTGAAGCACTTGAAGCACTCTAAGGACACGGTTATTTTGATGATTGATGATTCTAATATAAAATCTctatcattaaatatatttatcattatttattaagaTGCATTCACAGAGTACATAAGTAGTGTTCATAACACATATCTCGCAGTATAACACATCATAACAGTGCCACAGAATCTtccagtgtgtgttcatgcaaaatgttttgttttagatGGATTgctttttctattattattcctctcatatactgtaaataaatgtaacttcAT

Function


GO: NA

KEGG:

id description
K19863 ICA1; islet cell auto antigen 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU385486 lncRNA upstream 153436 2400470 ~ 2400684 (+) True G325271
TU385483 lncRNA upstream 157233 2396673 ~ 2396887 (+) True G325268
TU385460 lncRNA upstream 219014 2334879 ~ 2335106 (+) True G325247
TU385253 lncRNA upstream 533732 2020184 ~ 2020388 (+) True G325089
TU385235 lncRNA upstream 542139 2009334 ~ 2011981 (+) True G325076
TU385672 lncRNA downstream 4898 2567979 ~ 2569739 (+) True G325435
TU385717 lncRNA downstream 80960 2644041 ~ 2647583 (+) True G325462
TU385973 lncRNA downstream 508768 3071849 ~ 3072073 (+) True G325697
TU386009 lncRNA downstream 576231 3139312 ~ 3208962 (+) True G325730
TU386041 lncRNA downstream 695848 3258929 ~ 3260181 (+) True G325754
XM_034297832.1 mRNA upstream 4223 2542942 ~ 2549897 (+) True LOC113532859
XM_026924899.2 mRNA upstream 17060 2426744 ~ 2537060 (+) True LOC113533066
XM_026924898.2 mRNA upstream 17702 2426744 ~ 2536418 (+) False LOC113533066
XM_034297943.1 mRNA upstream 181680 2364753 ~ 2372440 (+) True rab11al
XM_026924736.2 mRNA upstream 191121 2358315 ~ 2362999 (+) False rab25b
XM_026924423.2 mRNA downstream 20138 2583219 ~ 2607036 (+) True col28a1b
XM_034297894.1 mRNA downstream 83700 2646781 ~ 2656914 (+) True slc25a32b
XM_034297895.1 mRNA downstream 85404 2648485 ~ 2654376 (+) False slc25a32b
XM_026924446.2 mRNA downstream 677361 3240442 ~ 3251360 (+) False pbx2
XM_026924447.2 mRNA downstream 677361 3240442 ~ 3251360 (+) False pbx2
XR_003403389.2 other upstream 339821 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 339859 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 409609 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 1390506 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 1543897 957125 ~ 1010223 (+) False cpne4a
TU385671 other downstream 2619 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 1448329 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 2357899 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 2361705 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 2769187 5332268 ~ 5338251 (+) True G326997

Expression Profile