Item | Value |
---|---|
RNA id | XM_034297929.1 |
length | 2232 |
RNA type | mRNA |
GC content | 0.47 |
exon number | 13 |
gene id | ica1 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_047616.1 |
NCBI id | CM018562.1 |
chromosome length | 21037487 |
location | 2554120 ~ 2563081 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
id | name | namespace |
---|---|---|
GO:0019904 | protein domain specific binding | molecular_function |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU385486 | lncRNA | upstream | 153463 | 2400470 ~ 2400684 (+) | True | G325271 |
TU385483 | lncRNA | upstream | 157260 | 2396673 ~ 2396887 (+) | True | G325268 |
TU385460 | lncRNA | upstream | 219041 | 2334879 ~ 2335106 (+) | True | G325247 |
TU385253 | lncRNA | upstream | 533759 | 2020184 ~ 2020388 (+) | True | G325089 |
TU385235 | lncRNA | upstream | 542166 | 2009334 ~ 2011981 (+) | True | G325076 |
TU385672 | lncRNA | downstream | 4898 | 2567979 ~ 2569739 (+) | True | G325435 |
TU385717 | lncRNA | downstream | 80960 | 2644041 ~ 2647583 (+) | True | G325462 |
TU385973 | lncRNA | downstream | 508768 | 3071849 ~ 3072073 (+) | True | G325697 |
TU386009 | lncRNA | downstream | 576231 | 3139312 ~ 3208962 (+) | True | G325730 |
TU386041 | lncRNA | downstream | 695848 | 3258929 ~ 3260181 (+) | True | G325754 |
XM_034297832.1 | mRNA | upstream | 4250 | 2542942 ~ 2549897 (+) | True | LOC113532859 |
XM_026924899.2 | mRNA | upstream | 17087 | 2426744 ~ 2537060 (+) | True | LOC113533066 |
XM_026924898.2 | mRNA | upstream | 17729 | 2426744 ~ 2536418 (+) | False | LOC113533066 |
XM_034297943.1 | mRNA | upstream | 181707 | 2364753 ~ 2372440 (+) | True | rab11al |
XM_026924737.2 | mRNA | upstream | 191148 | 2358328 ~ 2362999 (+) | True | rab25b |
XM_026924423.2 | mRNA | downstream | 20138 | 2583219 ~ 2607036 (+) | True | col28a1b |
XM_034297894.1 | mRNA | downstream | 83700 | 2646781 ~ 2656914 (+) | True | slc25a32b |
XM_034297895.1 | mRNA | downstream | 85404 | 2648485 ~ 2654376 (+) | False | slc25a32b |
XM_026924446.2 | mRNA | downstream | 677361 | 3240442 ~ 3251360 (+) | False | pbx2 |
XM_026924447.2 | mRNA | downstream | 677361 | 3240442 ~ 3251360 (+) | False | pbx2 |
XR_003403389.2 | other | upstream | 339848 | 2210222 ~ 2214299 (+) | False | LOC113533074 |
XR_003403390.2 | other | upstream | 339886 | 2210222 ~ 2214261 (+) | False | LOC113533074 |
TU385279 | other | upstream | 409636 | 2142506 ~ 2144511 (+) | False | bola1 |
TU384187 | other | upstream | 1390533 | 1118268 ~ 1163614 (+) | True | G324258 |
XR_004576993.1 | other | upstream | 1543924 | 957125 ~ 1010223 (+) | False | cpne4a |
TU385671 | other | downstream | 2619 | 2565700 ~ 2569739 (+) | False | G325435 |
TU386582 | other | downstream | 1448329 | 4011410 ~ 4013538 (+) | False | hamp |
TU386810 | other | downstream | 2357899 | 4920980 ~ 4923681 (+) | True | fabp10a |
TU386814 | other | downstream | 2361705 | 4924786 ~ 4930154 (+) | True | srsf10a |
TU387482 | other | downstream | 2769187 | 5332268 ~ 5338251 (+) | True | G326997 |