Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026924045.2 |
| length | 841 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 3 |
| gene id | LOC113532608 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 3301555 ~ 3304044 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006030 | chitin metabolic process | biological_process |
| GO:0006032 | chitin catabolic process | biological_process |
| GO:0006040 | amino sugar metabolic process | biological_process |
| GO:1901564 | organonitrogen compound metabolic process | biological_process |
| GO:0046348 | amino sugar catabolic process | biological_process |
| GO:1901071 | glucosamine-containing compound metabolic process | biological_process |
| GO:1901072 | glucosamine-containing compound catabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0006026 | aminoglycan catabolic process | biological_process |
| GO:0019825 | oxygen binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU386041 | lncRNA | upstream | 41374 | 3258929 ~ 3260181 (+) | True | G325754 |
| TU386009 | lncRNA | upstream | 92593 | 3139312 ~ 3208962 (+) | True | G325730 |
| TU385973 | lncRNA | upstream | 229482 | 3071849 ~ 3072073 (+) | True | G325697 |
| TU385717 | lncRNA | upstream | 653972 | 2644041 ~ 2647583 (+) | True | G325462 |
| TU385672 | lncRNA | upstream | 731816 | 2567979 ~ 2569739 (+) | True | G325435 |
| TU386119 | lncRNA | downstream | 15873 | 3319917 ~ 3322330 (+) | True | G325815 |
| TU386344 | lncRNA | downstream | 397290 | 3701334 ~ 3702153 (+) | True | G326023 |
| TU386457 | lncRNA | downstream | 576633 | 3880677 ~ 3880941 (+) | True | G326131 |
| TU386508 | lncRNA | downstream | 641338 | 3945382 ~ 3946133 (+) | True | G326178 |
| TU386524 | lncRNA | downstream | 663488 | 3967532 ~ 3973002 (+) | True | G326193 |
| XM_026924341.2 | mRNA | upstream | 6523 | 3279997 ~ 3295032 (+) | True | brd2b |
| XM_026924709.2 | mRNA | upstream | 23108 | 3265283 ~ 3278447 (+) | False | tap1 |
| XM_026924044.2 | mRNA | downstream | 1062 | 3305106 ~ 3310818 (+) | True | LOC113532606 |
| XM_026924434.2 | mRNA | downstream | 61077 | 3365121 ~ 3422994 (+) | True | LOC113532798 |
| XM_026924435.2 | mRNA | downstream | 111229 | 3415273 ~ 3422994 (+) | False | LOC113532798 |
| XM_026924436.2 | mRNA | downstream | 111347 | 3415391 ~ 3422994 (+) | False | LOC113532798 |
| XM_026924247.2 | mRNA | downstream | 121531 | 3425575 ~ 3470212 (+) | True | LOC113532711 |
| TU385671 | other | upstream | 731816 | 2565700 ~ 2569739 (+) | False | G325435 |
| XR_003403389.2 | other | upstream | 1087256 | 2210222 ~ 2214299 (+) | False | LOC113533074 |
| XR_003403390.2 | other | upstream | 1087294 | 2210222 ~ 2214261 (+) | False | LOC113533074 |
| TU385279 | other | upstream | 1157044 | 2142506 ~ 2144511 (+) | False | bola1 |
| TU384187 | other | upstream | 2137941 | 1118268 ~ 1163614 (+) | True | G324258 |
| TU386582 | other | downstream | 707366 | 4011410 ~ 4013538 (+) | False | hamp |
| TU386810 | other | downstream | 1616936 | 4920980 ~ 4923681 (+) | True | fabp10a |
| TU386814 | other | downstream | 1620742 | 4924786 ~ 4930154 (+) | True | srsf10a |
| TU387482 | other | downstream | 2028224 | 5332268 ~ 5338251 (+) | True | G326997 |
| TU389428 | other | downstream | 4597748 | 7901792 ~ 7902608 (+) | False | LOC113532663 |
