RNA id: XM_026924078.2


Basic Information

Item Value
RNA id XM_026924078.2
length 3225
RNA type mRNA
GC content 0.53
exon number 17
gene id ntrk1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1952830 ~ 1976952 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggggagaagaggagagacGAGAGGCGAGGAAAAGGAGAGGAGGCAGCAGCCCACTGTTCCCCTGGGCCCTTGCCTCACTGCTGCTCCAGTGGCTTGATAATTACCTCACAAGCCAAGAGATCCAGTTGTCCAGATCGCTGGTGAAGAGAACCGAGGGCAGGTTACACTCACCATGGCTGGCAGGGCCGTGTGCCAGGTGGCCTTGGCTCTGTCTCTGATGCTCAGCCTGGCAGCCGGAGCTTGGATCGGCTGCCCCGGGGCCTGTCGATGTTCCTTCGCCATGCTTCAGTGCTTGGAACAGGACGGCATCAACAGCATCCCGGTGCTGGCACAGCAGGAGAGCGAGAACGTCACGGAAATCTACATCGAGAACCAGCCGAACCTGGAGCAAATCACAGACGTGGACTTCATTAACTACAGAGAGCTGAAGAACCTCACAGTTACAGACTGCGGCTTGCTCTTCATCTCCAATAAAGCCTTCCAATACAACGCCAAGCTGCAATATGTGAACCTGGCCGCAAACTCACTCATGCACATCGGCTGGAAGGTCTTCCACTCGCTTCCTCTGCTGAATCTGGTTCTGAGGGATAACCCTCTCACTTGCTCATGTGGCCTGTACTGGCTACAGCAGTGGCAAAAGATGAAGCGAGCCGACATCGACAGCCAACAGAGCTGCTTGTACAATGGCAGCAGCGTTCTGCTCGACAGCTATGTGATGGAGAACTGCAGTGTTCCCAAGGTGTCCATCACCGCTCCAGTTCTCACCATTAAGGAGGGTGGAAATCTGACATTTGAGTGCCAGGTCACTGGTGTTCCAATGCCTAGAGTTAGATGGAGGACGGAGCACCTTCATTCCAGTTTTATTCTGCAGcgtggGATTTGGGGCTCCACTTTGGAGCTGGTTCTTCACCTGTTAAATGTGTCGTATGTGGACAACCTGCACAATCTCACCTGTGAGGCAGAGAATGAAGCGGGCCCGGGAGAGGCGATGGTACAGCTCAACATCGAGTTCCCGGTGAGGATCCTGTTCTTGAAGGAGCCGGAGCAGCAGCATCACTGGTGCTTCCCCTTCGCCGTAGACGGAAATCCAGCGCCGAGCATCAGGTGGCTGTACAACAACACGCCGCTGGTGGAGACCATGTACACCTACACGCAGCTCATCCCGGACTCGGACGACGGCTCCGTCCAACATGGCTGCCTCTTCCTCAACAAGCCCACTCACCTCAACAACGGCTACTACACACTCATCGTGGAAAACACGCTGGGCCGAGACGAGGCAACGGCCAGCGGCAAGTTCATGGACAACCCGTTTGACCCCTTCGACCCTGAAGGCATTATCCCTGTGCTAACCAGTGACCCAACAGTGCCTACTAACCAGTCGACCGAGGACGTGACAGAGAAGCTGGAAAGCCGGCTGCTCGGGgTGTCTGTCGCTGTGGGTCTGGCTGTATTCGCTTGCACCTTCCTGCTCATCATGGTGCTGGTGATCAATAAGTGCGGGCAGCACTCCAAGTTTGGCATCCATCGGTCGTCTGTTCTAGGGAAGGAAGACGACTTGGCTGTCTCGCTTCGCTTTATGAACTTTGGTGCGAGTCCTCCGTCCTCGGATGAAGGCATGCTGGACTCCGGGCTCTCCAGCTTTGTGGAGAACCCACAGTACTTCTGCGGCATCATCAAAGACAAGGACATGTGTGTGCAGCACATTAAGAGGCAGGACATCATGCTGAAGTGGGAGTTGGGAGAAGGAGCTTTCGGGAAGGTTTATTTAGCCGAGTGTGCTAACCTCTGCCCGGACACTGATAAGATGCTGGTGGCCATAAAGACTCTGAAGGACGCCAACGAGTCGACTCGACAGGACTTCCAGCGCGAGGCCGAGCTCCTGACTGTGCTCCAGCATGAGCACATCGTCCGCTTCTACGGGGTGTGCACGGACGGAGAACCTCTCGCCATGGTGTTTGAGTACATGCGGCACGGCGATCTCAACCGCTTCCTCAGGGCTCATGGTCCAGATGCTCGGATCTTGGACGAGGTAAAGATGCCCCCGATGGGTCAGCTGACCCTGTTGCAGATGCTCCAGATAGCAGCCCAGATTGCCTCTGGTATGGTATACCTGGCCTCACTCCACTTCGTGCACAGAGACCTGGCCACCAGAAACTGCCTGGTCGGTGAAGGTCTCGTGGTGAAGATCGGTGACTTTGGCATGTCCAGAGACATCTACAGCACTGATTACTACAGGGTCGGTGGAAGAACCATGTTACCTATTCGTTGGATGCCTCCTGAGAGCATCATGTACAGAAAGTTCACCACAGAGAGTGACATCTGGAGCTTCGGGGTGGTTCTATGGGAGATCTTCACCTACGGAAAACAGCCGTGGTATCAGCTGTCCAACAGCGAGGCGATCGAGTGCATCACGCAGGGCCGGGAGCTGGAGCGGCCGCGGACGTGTCCTAAAGAGGTCCACCAACTCATGCAGGGGTGCTGGCAGAGAGAACCGCAACAACGTCTCGTCATCAAGGAAGTCTACAACCGGCTCGTGGCCCTGGTCAAGAACCCTCCGGTCTACCTGGACATCCTGGAGTGAAACAGATCTGCAAAGGGACGGCTGGAGGTTTGGGTCAAAGAGACAAATttgtggagagaaaaagagacaaaggGACTGAAGAAGATCCAAGAGTCCCTCGTTCTGTGTTCGGTCAAACTGAGCGTCCATCAGGACCATTGAGGAAGGACAAAGTTGGCCAGAACATTTCATAACTCCATAATAACTCCTTAAGAAATCAGGAAACTGAATTGAGTCAAATCAACCCTTTTGTTCAAGCTAGCGGGAGAATGTTCgtattttgttttaaagtcAAGGGCAGGAACATAATCACCCCTTTACGTGATCTTTGTGTCTCTTTTCCTCCTATAAGTCACGTTGCGGTGTTTTACAAGCTCGCAGTGTCGTGCCAAGTGGATTGCATCAGAAAGTTCACACGTCCCTTGTATTGCAGTTGTGAATATTCACTGTATTATATAGAAACATGTTATGAGTGCACTAAAATCGCATGTATTGGACTTTCCTTATTCTTAAACAGCACCTTTTACACAAATCCCTGTATGTCTTTCTAACCACACGTCCCTTTTAGTTCATTtgcacacacaggtacacagtTACACATACAGTTACACACCGCTACACACACGGGTACACAGGTACAcatacagttacacacacaggtacac

Function

GO: NA

KEGG:

id description
K03176 NTRK1, TRKA; neurotrophic tyrosine kinase receptor type 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385208 lncRNA downstream 4619 1906943 ~ 1948211 (-) True G325056
TU385210 lncRNA downstream 32358 1919271 ~ 1920472 (-) True G325058
TU385155 lncRNA downstream 54649 1897711 ~ 1898181 (-) True G325003
TU385131 lncRNA downstream 204822 1747657 ~ 1748008 (-) True G324980
TU385117 lncRNA downstream 228066 1724010 ~ 1724764 (-) True G324970
TU385254 lncRNA upstream 43228 2020180 ~ 2020405 (-) True G325090
TU385304 lncRNA upstream 78231 2055183 ~ 2140101 (-) False LOC113532493
XR_003403348.2 lncRNA upstream 163035 2139987 ~ 2142077 (-) True LOC113532493
XR_003403392.2 lncRNA upstream 238518 2215470 ~ 2237763 (-) False LOC113533076
TU385540 lncRNA upstream 238531 2215483 ~ 2238076 (-) True LOC113533076
XM_026924432.2 mRNA downstream 189424 1735617 ~ 1763406 (-) False rgl2
XM_026924431.2 mRNA downstream 189424 1735617 ~ 1763406 (-) True rgl2
XM_026924433.2 mRNA downstream 197817 1735617 ~ 1755013 (-) False rgl2
XM_026924728.2 mRNA downstream 234237 1714275 ~ 1718593 (-) True si:dkey-33i11.1
XM_034298233.1 mRNA downstream 244584 1686703 ~ 1708246 (-) False hpn
XM_026924695.2 mRNA upstream 33237 2010189 ~ 2011797 (-) True LOC113532949
XM_034297949.1 mRNA upstream 33237 2010189 ~ 2011739 (-) False LOC113532949
XM_026924301.1 mRNA upstream 291058 2268010 ~ 2272046 (-) True tmem176l.1
XM_034298047.1 mRNA upstream 358521 2335473 ~ 2339983 (-) True si:dkey-152b24.7
XM_026924442.2 mRNA upstream 358521 2335473 ~ 2339944 (-) False si:dkey-152b24.7
TU384835 other downstream 502114 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 581801 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 850713 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 1225196 726627 ~ 727634 (-) True G324579
TU384506 other downstream 1596209 350738 ~ 356621 (-) False slc4a7
TU385328 other upstream 111307 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 1260749 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 2986665 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 2986665 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 3852522 5829474 ~ 5978379 (-) False zfpm2a

Expression Profile