RNA id: XM_026924081.2


Basic Information

Item Value
RNA id XM_026924081.2
length 2380
RNA type mRNA
GC content 0.44
exon number 8
gene id paqr6
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1925582 ~ 1943290 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTCAGTTTAACCTCCCTCGTAGTGGAGCACTAGGTAGGGTGCTAGTGCGGATTGGGACGCGGCCACGCTGTAACTTTTTCCCTCCACTCACTCAGAGGTGGTGTGCAACAGTTTCTCTCGCAGGGATGAAGAACATTCCTCAGCACTTGTTTCCTGTGTGGGCGGGGCCTGGCAGGGGCCGAGGCTGGTCCTGGCCTCTCTGTATAAAATGGGAGGCCGGTGAAGGGCTTCAGTCCTGGGGTTTGGACTCTCGGGTCTGGTGCATGCTGTGCCACGGAGGCCGAGAGAAGCTCGAGCAGGCCTGTCAGAGAGGCAGGGGGGCGCTGCAACTACCAAAAGCCATGCTCCAACTCCCTCGCCTCTTCAACATCCACCAAGTCCCAAAGGTGTTTTGGGAGGACGGCATCATATCCGGTTACCGACATCCTCAAAGCTCCGCCCTGGACTGCATCCTCAGCAGCTTTCAGATGACCAATGAGACGGTGAATATCTGGACCCACTTCCTGCCAACATGGTACTTCCTGTGGCGCTTCTGTGTGCTCTGTTCCACGGTGAACTTCCTGTCCGAGAGCTACACATGGCCGCTGCTGGTGTACATGCTGCTGATCTGTGTGTATCCGTTCACATCCAGCTGTGCTCATACCTTCAGCACAATGTCACCCGAAGCCCGACACATCTGCTACTTCTTCGACTATGGAGCGCTCAGCCTTTACAGCctagGTTGTGCAATCGCATACGGGTCCTACGTGATGCCTGATTGTTGGGTGAACGGTCGGCTCCATCACCACTTCGTACCCATCGCCATCGCGAACACCATCTTCTGCACCAGCACGTCCTGCTACTCCAGgtttTTAGAGTTGCAGTTCCCACACAGGAGTAAAATCTTGCGGACCGGAGCGTTCGTTATTCCCTTCATGTTCGATAACATCCCGCTTTTCTACAGACTCTTGCTGTGTTTCGGTGGAAGCTGCACTTACGCAGACGCTCTGTCCAGTCACTGCTATCACCTGCTGTTTGCTTTCCTCACCTGCTTCCTGTTCGCTTCTCACCTGCCCGAGAGACTCGCGCCGGGACGCTTCGACTACATCGGCCACAGTCACCAGCTGTTCCACATCTGCGCTGTGATCGGCACACACTTCCAGATGGAGGCCGTTCTGGCGGATATGACGTCACGCCGGAGCTGGCTCACCGCTCACTCAGCCGCTCCGTCCTTCCTGGGAACGCTGGGAGCGCTGGTGCTCGGCATCCTGCTCAACCTGGGCATCATCGTCCTGTTCAGCGCCAGTCTGCTGCGTGCTCCAAACCTCAGCTCCGAGAAAGGAGTCACTACAAACCGCACGCTGCAGCCCAGCACCGCCGCGAAAGACGAGTAAAACTCTCAAGCACTTCAGAAAAATAAACTCTAAACATGGCCCAGGGACTTCTTTAAAAATAGAGATGCACcgaaatttcatttcatttcaaataattCTGCCAAAAATTAAGCTTTTTTGATATGAAAAGATAACAGTgctaaaaagatttaaaaaaaaaaaaaaaactccagaaatttttattttaattatttaagattaatttttaaatcatctGATGTATAAACTCAAAAGGAATAACAGATTTTTGTGTCTGAGAAGGTAACAATgccaaaaaaatgagaaaaagttcttttaattatttaagattAATTTCAATGATAAAATCATCAAAATAATCAGTTAccaattttataatataaaattatcaAAATCAAAGTCACAATAATCAAATTCCTTTGTTgtctaaaaagtaaaaaaaaaaaagaacaaaaatattgaaaaaaatgtttcagtcaaatgcataaaaatgtgaATGACTTTTCGCACAACTGAAattgcttcaaaaaaaaaaaaaaaaatatgatttaagataaattgtaaaatcttTGCTACATTCTTGCACTAGTAAGTTGTTCAGTGTTGCGAAATGTGGAGGAGTCTTCCATGATTGGTTCATTTTTAATCACctttaagccaaaaaaaaaaaaaaaaaaaaaagatttttgtcatttttggcaCAAACCCGTGAATAGCGCACACACGTATACGTTTTATACTAACTGCAGGTTCTACGTATGTTACTGTTTCGTGTGTGTTTGCGTTTTGGGAGTGAGTGGGGTTTGGCTTGTGAATGCTACAGAATCcgaaagtgtttaaaaaaagcattttcttatagatttatattcAGAATTAACAGCACTTCTTAAAAGCGTGACTGTTGGCTCCATGAGCcacttgtgtgtttgttttttcagtaattgtttacattttaaaaaaattataaaaatttatatatatttaaaactcaaaagatgaaaaagattaaatatatgtaaaacctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385084 lncRNA upstream 22885 1899643 ~ 1902697 (+) False smg5
TU385013 lncRNA upstream 186327 1735619 ~ 1739255 (+) True G324889
TU384946 lncRNA upstream 257739 1667560 ~ 1667843 (+) True G324842
TU384934 lncRNA upstream 269721 1655128 ~ 1655861 (+) True G324831
TU384935 lncRNA upstream 271992 1652671 ~ 1653590 (+) True G324832
TU385237 lncRNA downstream 49966 1993256 ~ 2011981 (+) False G325076
XR_004576937.1 lncRNA downstream 56847 2000137 ~ 2001004 (+) True LOC117595767
TU385235 lncRNA downstream 66044 2009334 ~ 2011981 (+) True G325076
TU385253 lncRNA downstream 76894 2020184 ~ 2020388 (+) True G325089
TU385460 lncRNA downstream 391589 2334879 ~ 2335106 (+) True G325247
XM_034298254.1 mRNA upstream 5872 1899626 ~ 1919710 (+) True smg5
XM_026924186.2 mRNA upstream 27192 1796355 ~ 1898390 (+) False syngap1b
XM_026924188.2 mRNA upstream 27192 1796355 ~ 1898390 (+) False syngap1b
XM_026924181.2 mRNA upstream 29625 1796355 ~ 1895957 (+) False syngap1b
XM_026924182.2 mRNA upstream 29625 1796355 ~ 1895957 (+) False syngap1b
XM_026923877.2 mRNA downstream 71321 2014611 ~ 2019052 (+) True rbm8a
XM_026924481.2 mRNA downstream 78125 2021415 ~ 2055739 (+) True otud7b
XM_026924482.2 mRNA downstream 78125 2021415 ~ 2055739 (+) False otud7b
XM_026924483.2 mRNA downstream 100495 2043785 ~ 2055739 (+) False otud7b
XM_034298164.1 mRNA downstream 116250 2059540 ~ 2091481 (+) True mtmr11
TU384187 other upstream 761968 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 915359 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 1119054 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 1177107 745673 ~ 748475 (+) True G324206
TU384064 other upstream 1315573 607612 ~ 610009 (+) False G324161
TU385279 other downstream 199216 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 266932 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 266932 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 622410 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 2068120 4011410 ~ 4013538 (+) False hamp

Expression Profile