RNA id: XM_026924083.2


Basic Information

Item Value
RNA id XM_026924083.2
length 3015
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC113532629
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5241135 ~ 5248144 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTAGCTATGGCGTCTAAACGTCTCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCAGCTGCGTTCACCGGTACTGGGACATCAAACGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCCGCGATAAACCCTACGATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATAGAGAGAAGCTGAAACTCTTCTGTGTGAATGACGGAGAGGTCGCGTGCTTGCTCTGTCGAGATTCTAGCAAACACCTACAGCACCAATTCATTCCTGTCGACGAAGCAGCTTCTGAACTAAAGGGTGTTCTTATGAGTGCACTGAATaccttgaaaatgaaaatgaagagcCTCCAAGATGCCCACTTTCATTGTCATCAAAATATAGATCACATAAAGCAACAGGCAGAGTACGTAAAGAATCAGATAAAGGAGGAATTTAAGAAACTTCGGCAGTTTCTGCAAAAGGAGAATAGAGCCATGATGAAGCAGCTGAAGAAGGAGGAGCAGGAGAAAACAAAGAGTCTGGAAAGCAAAATAGAACAAATGAATCAAGAGATACAGTCACTCTCAGACACTATTAAAGACCTAAGAAAGGAATTTGAATCTGAAGACGTCAAATTCCTGAAGAACTTTGAGAGGACTTTGGCAAAATCCGAGTACAAAGATTCTCATCCAAATGTGGCTTCAGGCGAAGTTATTGATGTGGCAATGTACGTGGGAAACCTGCAGTTCAGACTCTGGAACAAAATGCAGAGCATCATTAAATACaCTCCTGTTATCTTGGACCCAAACACAGCTCACTCGCAGCTCATTCTGTCTTCGGATCTGACCAGCGTAAGAGACAGTGATGATGACGTTGAGGACAAGGCTGACAAGCCCAGACTACCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGGTCTGAGGGCTTCTCTTCGGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTCGGTGTGACCACTGAGACTGTTCAGAGAAAAGAATCCAATGTTTTTCCCAGAGGAGCTTGGGGTATTGGGTATGATGGTGAAAAGCTGTGTGCTCGATCCCCTTTGGAAGTGTATACTCCTCTCACTTTGGCTGCCAAACCCCAGGTGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCTTGCCAGCAATGACATTATCCACATGTTCTCACACCAGTTCACTGGGAAGGTCTTTCCCTTCTTCCACAGCATGTGCAGTCTATCTCCTCTGAAGATTATGCCTCTCCAGCCTTTTGTGATGCTGGAAGACATCCCTTAATGCTCTTGTTTCTAAGTGATAAGTGGCAGTGATAAGTGGCGGTGGTTCACATTACTGACTGTAGTCCATTTTTAAAGttgtaatgtatttattctgTTGTAGCAACTTGAAGAACAAGTAAACTAGATCAGGGTACAGTCTGACAACTTGTTTGATGCTAAAGAAAGACGTATGGTGATGTAGATTATGTGGAGAACATGTCAGtacagttttgttttgctttctgtaCCTTTCATGGCTAAAGGTGAAAAAGATGGAACTATATAACAGAATATAATGTGTCAAGTGTTTGTTCACACTTAGACATAAGGCTGttacactttaaaatgtttatcttCTACATCTTGTGCTCTAATAGTTCCACACAGTTTGTGTTATTAGTCAGAACCTAGCTCATGTGACATCTTTCGGTTTTCACCCTGGTTTTCCCCTagtcatttgtcatttttcttagTGTCATACGTAAAATAttatgccaaattctgattccaAATTCTTCTTCCATCTGATGGGAGAAGGGACATTAAATGAAGTGTTAAAACCTCTTAGCACTTTCTGGCAAATCATAGTGTGGGAGACTTTCTAATGACAAGCTTATAAGGCATGACTGATTTGTTGTGATGGCCATGACCGTTATCGAAACATGGGTTCAAGGACACACAGTATTAGAGACCAAACACAGGTGAATACAGTGAAGCTTTGTTGaaacataaataacacaatGGGTAATGCACTAATCCACCTCCTAAATAAAAGCCTAGATAAGTTTTATTGATGGAAATTGGTATTGATAGGGATTCTATTCTGAACTTaagtttctttttctgtcttttttttttagccataaTTTCTGGAAAATCGCTCTGGAGTATAAAACCTTGTTTGAACTGGATTCGTTTTACCTGTAATCTTAGTGATTACTAAAGAGATCTAAAATTAGTATACTGCTAAAATGTAGCATAACCTGTACATATACATCTTGGCTATGATGTTTACATCTGGACTGTCTGTTTGAGGACTGCACTTATGCACTTATTCATTCTAGCATCTAATTCAGTTTAGtttgattttgttattttgttacttttaaTGTGTATTTGCTATATTCTTTTAAACCTTTACTTTCCATATACTGTAAGCcatgttgtgttattttattcatgtttctCATTATTTCTTCCTGCAAAACACTGTGAACTTGTGTAGGAACATGTACAGCCTAGTTTAGTAGTAGAAGCCTTGTTTAAGAGAtgcacatatttaaaatatgaaggCACACCTTGTTAGCACTGTGAAAGTGGATTTCctcttgatttttttatgtcatccttttaaatattattcataatatgtaaagaaaacgtgcttattattattattattattattattattattattattattattataactattattatgTTATGTCACTGTAAAAGTCTCCTGGAGGTGCTCACACCAGCCAATttggaaattaatcaaaacctgaGAATACAAAACCAAAGAATATAAAGGTGCTTTAAACATTCTGAGGTATGGTCCAAAATCCTGCTGTGTGTAGTTGGtgcatgtattttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386838 lncRNA upstream 211345 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 251819 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 257455 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 316499 4924178 ~ 4924636 (+) True G326440
TU386800 lncRNA upstream 437076 4803837 ~ 4804059 (+) True G326429
TU387473 lncRNA downstream 63087 5311231 ~ 5314589 (+) False acbd7
TU387573 lncRNA downstream 293214 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 357726 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 584849 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 594075 5842219 ~ 5842438 (+) True G327391
XM_034297950.1 mRNA upstream 963 5236219 ~ 5240172 (+) True LOC113532857
XM_034297951.1 mRNA upstream 963 5236219 ~ 5240172 (+) False LOC113532857
XM_034297952.1 mRNA upstream 963 5236219 ~ 5240172 (+) False LOC113532857
XM_034297885.1 mRNA upstream 7086 5228577 ~ 5234049 (+) True LOC113532508
XM_026923897.2 mRNA upstream 7086 5228577 ~ 5234049 (+) False LOC113532508
XM_034298250.1 mRNA downstream 766 5248910 ~ 5254552 (+) False LOC113532776
XM_026924395.2 mRNA downstream 769 5248913 ~ 5254552 (+) False LOC113532776
XM_026924394.2 mRNA downstream 771 5248915 ~ 5254552 (+) True LOC113532776
XM_026924393.2 mRNA downstream 6542 5254686 ~ 5258559 (+) True LOC113532775
XM_026924452.2 mRNA downstream 12294 5260438 ~ 5294743 (+) True fam171a1
TU386814 other upstream 310981 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 317454 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1227597 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2671396 2565700 ~ 2569739 (+) False G325435
XR_003403390.2 other upstream 3026874 2210222 ~ 2214261 (+) False LOC113533074
TU387482 other downstream 84124 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2653648 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3140043 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3366929 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3520601 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile