RNA id: XM_026924098.2


Basic Information

Item Value
RNA id XM_026924098.2
length 4835
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC113532640
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6654775 ~ 6759822 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agaggagacaGAAGCagaaagggaggaggaggaggaggaagaggaggaggaaaaagaagGGTTCGAGCTCGCATTTGAAATAAAAGTCGCTGCATTCAGACTGCGCGCGCTCCGTTCCTGCATCCCCGAACTAAGCTTGGTCTCGTGGAGGATCTAGTCCTCTAACTGCCCAGCACTGACTAACACTGTTGCTCTGAAGCTCATGGGCGAGAGAGCGGATGGCGTGCTACTACCTGGTGATTAGCTCCACGCACCTCAGCAACGGACACCTCCGGAGTATCAAGGGAGTTTTCCGCGGTCCGCTGTGCGCGAGCGGCGGCGCAGAATCTCCGgaCTATGCTGAAAAGGAGAAAGCCATAACCAAAGCTCTGGAGAACCTGAAGGCCAACTTCTATTGTGAGCTTTGCGACAAACAGTACCACAAGCATCAAGAGTTTGACAACCACATCAACTCATATGACCATGCACACAAACAGAGACTGAAGGAGCTTAAGCAAAGAGAATTTGCACGCAATGTCTCATCTAAGAGCTGGAAGGATGAAAGGAAGCAAGAGAAAGCACTGAAACGCCTCCATCAAATTGCCCTGCTCAAGCAGCAAAGGGATGGtgacaaggaaaagaaGACAAAGTTAACAGCTGCAGCCCGAGACCAGCAGCAAGAGAAAATAAGGCTCAATGGCAGTGACAAACCAGGATCCAACAACACCCTATACCAAGATCAGAATCACAGCACTCCCTCCCCAAAGGAAGGACCAAAATCCCCAACCACCAAAATCCCTCCATCTGCGCCAGTGCTTACAAATCAGTGCTCTCTTCGGGTTAAGTGTTCCTCACTGCTAGCTCAGACCCCAAAAGGTCACCGGCATGCTAAGGCAGGGATCTCATTCTGTTTCTCCAAACGGGCTCACCTGAAGCTGGACTCCTGTGCATCAGTGTTCACTGATGGCTTGGATGAAACTAGTGACCACCAGGAAGTCCAGAGACAGCAGCAGAAGCTGGCCTTGCAGGCCCTCTTGTCCCGATCTCCCTCACCCACACAGGATGACCACCATGTTCCTCTGGATCCAATGCCACTGAACACTTCCCCAAAGAGGGATCTACAGACAGATCAGCCCAATCAGGAAGGTAGTCTGGAGATGCAAGTGATGTACTGCACCATAGAGCCACAGAGGCAAAGTTGTCCTGATACACATGGTCCAGAATTTAGGAGACAGCCAGCCAGTTCAAAAGATAGGGCAGCTAATAATGGCCAGAAATCCAGACAAGAAAGGGCCTATGAGGGATTGATGGAGAGAAGCAGCCTGAGCCCTACTGCTCACATAGATGGACATAACAATATGACTCCTGGCCAACTCAATGCACAGTACTCAAAACAAGACTTACAAAGAAGTAGCAAACAGGATAATTCGATGACTGAAAACTGTTTAGCTGAGGGTGACCTAAGCAGAAAAACTTTCTTAAGTGTCCTTGGAAAAGATGGGACTAAGCTAAAATGGCCTTGTGAGCTTGTGCAGTACACCTCAGATGAACCCCGTGTGTCCTACAGCTGCAATCCACTCTTCTTGAATTTCAAATGCACAGAAGGCAAAGAGAAAAGCACAGGGGCAGAGAAGGCAGATGTTTGCAATGTCTCAGATCAACCCAACAGAGCTGAGGAGCAGACcccaaatattaataaagttaaCTTAGGCattttaaaaccaaagaaacacaaacatcGGCGGAGAGGAAGAATTCGTATGTGTAAAGTAAATGCTGTTAAGAGACAACGAGTGGCCTGTGCACTCAGCAGTTTTTCCCAGTCACCTGCTGAAGGACAATTTGAATTCAACCGCACCCCGGCCAGCAAACTGCGCATCAAGCAGAACTGCACTGAGAAGAGGCACAAACTCAGGAACAGGAAGAGACCACAGGATGAAACACAACAACTAAACCTGAAAAGTATAATTGTAAATGCTTTTTCTGCCCCACAACACCGAAGAAGGAAGCGTCAGAGGTTGCCTTCTGCTCTAGGCGTGGCGAAGCACAAGGCTCTTTTGCATGCATCTCCAGTTGGGAGTGGGGATAATTACCAGTGGTATGGCAACTTCTGTAAATCTAAACGGGATGCTAATGTGACCCCACTCAAGTCCAGCTCATGGGGCGTCTTGTCGGAATTGAGGTCTGATAGCGAATGGCCTGCATACCAGTGGGAAAGACATTGTACTTCTTCTGCATCAGCTTCCTTCTATCCCAGGAGGAGAGGATGTAGCCAGCCTTGCTCTTATATCAGAAAATCTAGTTATAGCTTCCCATGCTATGGTTACAGGCACATGTCAGACAGCCCAGACAAAGATACTGAACCCAGAGAAGAATACTGCGATTACAGAGACTCAGAACTCTACAAGGAGAGGAATTACTATGGGGTTTGTGACAGACACTGTATTATAAAGCAGAGATACGGTATAAGAAAGCATAAAAGGCACCTCAGGGAGAACAGATATAGAGATTACCGTAACCCTGCCACAAAAAGAATTTGTTTGTATAGAGTCTATGAGGATGGTGATGATCCACATGACCCAGAACAAGACTGGTGGTGCAAGAGACCAAGCCCTGATCTTAGGAGGCATAAACGAAGAAACAGGTTCTGGTTAAGATCAGTGGTGAATCACGAGAAGGGGGATGAGCAGTCCAGTCCAATGTTCAGACATAGTCCTGCTTCCTCTAGTATCACCAGCATTTCAGACATTAGTGGCGACTGCAGTTCTTATATTAAGCAATCCTATTCTGGGCAGAGTGACTTCAAATGGCCAGCAGAGAGATCTGCCAGGACCAAACATTCTCATTCAAGAGAACACACACCAAGAGAAAAGAGTCCGTCACCAACATCAACATGTATTGATAGATCAGAGGCAGTGCAATCAGACTCCCAACCTGTTATTTCTGATTTCAGAGGAAAGCTGGAACCTGTTGCACAAAATTCCAAATCCAGTGATTTGACAAAGCAGAGCACATCAACTGATAAAAAATTGGCAAATAGCAGAATATGTACTCTTTCACTCCCCTTGATTGGCAAACTCCCCTCGATAAAGAAAGGAATAAGACAGGCAGGAATGCACAAAGTGAAAGGTAGCAGCAGCAGTTGTGGTAACCAagcaaaaacatttctaaatgatCAATCAAAACCTGAATGCCAAGCATTATTTGAAACTGCACATATAGCCACGCAAAATTCCTCATCCCAAGCTTGTCCACCTTTAACTGATCAGAGAACTGCAGAACCTTGTGTAAgcaaagaaacacagaaagatAAGTCCATGTCTCATGAAAACTTCATCAGAGTTCTGGGGAAGACATCAGACAAAACCCCAAATAATCCACCGCAGAGTTGCTTGATCCCTCCCTTAACAGAGAAACCTATAACATTCACGGAGGAAGAGATGGACAAGTACAGAATTCTTCAACTTCAGGCCCAGCAGCATATGCAGCAGAAACATCTCCAAGAGCAACATGACATGCCAAGAAGTTCATTTGTTCCTCAAATGAACCAACTACCTATTCCTGGTCCTGAGCCTTCAAATCAGACTGTCCCAGCTCCCTGTCTCTCATACACAATACATCAGCATGGGGCACTTTCAGCTTTCTCTTCCTTCATCTCCTGTCCTTCGGCCTGCTTGGCATCCCACAGTTCCCCATCTGCCCACCCTCCTCTCCGTCCCAGTCTCTCACAGCCCCACTTCACCCCTCTTCCATTTCCTACTGTGTTCTATCAAGCTTCCCCTGCAGTAATGCTGGCAACACACCCTCTCCACCTTATTTCAGCAGCACCCCTCCACCGTGCACATCCTCATTCTCACATTGCTGGCCTAATGCTTCACCCCCCACCACATGCCTCGTTGCTCCCCTCTGTGCTTACCCCAGCAGCCATGGTAGCTGGCAGGAGTCTGCAAATCCACCCTACACCACAGCCTCTGTTCCCTCAACAGGATCTTCAGCACCACCCTGGTATTGCTAGCTAGGTTTGGTGAAGAAAACAACAAGTCTGAATGGGAAAGAAGAAATGTGACAAAATAGAGAAAGTAAGGGGTCTATCCTTGGTACTCATAAGTGATATTGGACTATGGTCTAGCACtttttgatgtttgtttttgaCTTGGCCAAAGGTTTTAGTGTCTTGCTTGTcttatcatttattttgtacTATAATTGTTTGAATGTCTGTCTGCTATTTGTGTAAATGGTAGTGCAGTCAAGCACTGGCCTTCCTCAAAAAGGTTATCCTCCATAACTGTAAATTCCTTAAGTTCAACTGATGGGAAAATGGTTTACATGGCTTAAAAATGTAACTTGAAATGTAACTTTTGGTTAAATAGCAATTTGACTCAAGTCCCTTTTGAATAGTGGATTGCAAACATTATCTGCATGTCATAAAGCAGGATTGAGGGGTTATTTTTATCTATATCTGAGCACCAGAGGAGATGTCAGAGTGCCAAAACAAATGTATAGATTTGGGCATGTATGAGAATGAAAAGGagggatatacagtatattgaagtGTAAGCTGCAAGTGATTTGTTGTGTCCTGAGACTAAAGCATATTCTATCTTTCAGTACAGTTAAGTGAGGTGAAAGACTGACTTAATAGACTATAATACAGAGTtgtaataatgcaataatacaGTTTTCAATCTATTCAAAGGTCTAAAGCCTTCAATAGTATTTATGTACTGTACTTTCTAatggaaaatacatttaaaaatacattttaacaacATAAGGTGTGTACAACCTGCACTTGTCTGAATTATGTATGTTCCAGAGACTTTGTATTTACTCTTATTTTGTTAGAACCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387927 lncRNA upstream 812337 5842219 ~ 5842438 (+) True G327391
TU387921 lncRNA upstream 821513 5832993 ~ 5833262 (+) True G327385
TU387696 lncRNA upstream 1047676 5605870 ~ 5607099 (+) True G327178
TU387573 lncRNA upstream 1112886 5541358 ~ 5541889 (+) True G327071
TU387473 lncRNA upstream 1340186 5311231 ~ 5314589 (+) False acbd7
TU388766 lncRNA downstream 189737 6949559 ~ 6961376 (+) True G328161
TU388815 lncRNA downstream 263333 7023155 ~ 7029401 (+) True G328208
TU388835 lncRNA downstream 285224 7045046 ~ 7045278 (+) True G328222
TU388878 lncRNA downstream 368344 7128166 ~ 7136722 (+) True G328260
TU388910 lncRNA downstream 486508 7246330 ~ 7247279 (+) False erp44
XM_026924697.2 mRNA upstream 328415 6319087 ~ 6326360 (+) True upk1a
XM_034298203.1 mRNA upstream 342217 6304581 ~ 6312558 (+) True zgc:101716
XM_026924312.2 mRNA upstream 570521 6066133 ~ 6084254 (+) True dpys
XM_034298143.1 mRNA upstream 824715 5796162 ~ 5830060 (+) False si:dkey-122a22.2
XM_034298057.1 mRNA downstream 269959 7029781 ~ 7043670 (+) True tbrg4
XM_034298058.1 mRNA downstream 270136 7029958 ~ 7042817 (+) False tbrg4
XM_034298248.1 mRNA downstream 290830 7050652 ~ 7065149 (+) False nacad
XM_026924799.2 mRNA downstream 290831 7050653 ~ 7065149 (+) True nacad
XM_026924800.2 mRNA downstream 290831 7050653 ~ 7065149 (+) False nacad
TU387482 other upstream 1316524 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 1724621 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 1731094 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 2641237 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 4085036 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 1141970 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 1628365 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 1855251 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 2008923 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 2008924 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile