RNA id: XM_026924114.2


Basic Information

Item Value
RNA id XM_026924114.2
length 4868
RNA type mRNA
GC content 0.43
exon number 22
gene id atp6v0a1b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8677355 ~ 8745970 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCACGTGGTTAATTCTCGCCGAACTAGTGACGTCACCGTCATCCGTTCACTAAGGAGCAGGGAGCAGGCGGAGAGCGGTCCAGGACTGAAAGCATCCTCCCTATAAAGGCTTTCTCCTCTGTGTTGGCGGTAGACTCGGGAGCCTTATTTCTTTCCGCTGTGTTAACTGTGTGTGCAGTGGAGCACAATGGGAGAGCTATTCCGTAGTGAAGAGATGACCCTAGCCCAGCTCTTCCTGCAGTCTGAGGCTGCATATTGTTGTGTCAGTGAACTGGGGGAACTGGGAATGGTACAGTTCAGAGATCTCAACCCTGATGTGAACGTGTTCCAGAGGAAGTTTGTGAATGAAGTGCGGCGTTGTGAGGAGATGGATAGAAAGCTGCGGTTTGTGGAGAAAGAGATTAAGAAAGCCAACATCCCCATTGTGGACACTGGTGAAAATCCAGAAGTACCATTTCCACGAGACATGATCGATCTTGAGGCAACTTTTGAGAAGCTGGAGAATGAACTGAAGGAAATCAACACCAACCAAGAGGCCCTGAAGAAGAATTTCCTGGAGCTGACTGAGTTAAAGCACATTCTAAGACGTACCCAGCAGTTCTTTGATGAGaTGGAAGACCCCAATCTGCTGGAGGAGACTTCATCACTGTTGGATCCCAACGAGGCTGGGAGAGGGGCCCCACTGCGGCTTGGATTTGTTGCTGGTGTAATAAGCCGTGAACGGATACCCACTTTTGAGCGGATGCTTTGGAGGGTTTGTCGTGGCAATGTGTTTTTACGACTGGCTGAGATTGAGGACCCCCTTGAGGACCCCACAACAGGAGATCAAGTTCATAAGTCAGTATTTATCATCTTTTTCCAAGGAGACCAACTGAAAAACCGTGTGAAGAAGATCTGTGAGGGGTTCCGTGCATCCCTGTACCCTTGTCCTGAAACCCCACAGGAGAGGAAGGAGATGGCAGCTGGTGTCAGCACCCGCATTGATGACCTACAGATGGTGCTGAATCAAACTGAGGATCATCGGCAGAGGGTTCTTCAGGCTGCTGCTAAAACTCTGCGTGTGTGGTTCATCAAAGTGAGGAAGATGAAGGCCATCTACCACACACTGAACCTCTGCAATATTGATGTCACTCAGAAATGTTTGATTGCAGAAGTGTGGTGCCCTGTCTCTGACCTGGACTCAATACAGTTTGCCCTGCGGAGGGGCACGGAGAGGAGTGGATCCACTGTTCCTTCCATCTTGAATAGAATGCAGACCAAACAGACTCCACCCACCTACAACAAGACAACCAAATTCACCTCTGGCTTCCAGAACATTGTGGATGCTTATGGAATTGGAACATACAGAGAGATTAACCCAGCACCCTACACCATCATCacctttccttttctgtttGCTGTGATGTTTGGGGACATGGGTCATGGTGTGCTGATGACTTGTACCGCCCTCTACCTTGTCATCAGAGAGAGTCGCCTACTTGCACAGAAGCGTGACAATGAGATGTTTAACATGGTGTTTGCAGGCCGGTATATAATCCTTTTAATGGGCATATTTTCCATCTACACTGGAATGATCTACAACGACTGCTTCTCCAAATCCCTCAACATGTTTGGCTCTGGCTGGAGCATCAAGCCCATGTTTGGCTCCAAAGGAGGAAACTGGTCTTCTGAGACTCTTGATGGAAATCCAGTATTGCAACTTGACCCAGTTGTACCAGGAGTATTTGGTGGGCCGTATCCTCTGGGTATTGACCCAATCTGGAACATTGCCACAAACAAGCTAACCTTCCTGaactcatttaaaatgaagatGTCAATCATTCTAGGGGTGATTCATATGTTGTTTGGagtcactctttctctcttcaatCATCTGTACTTTAAGAAGCCTCTGAACATCTTCTTGGGTTTTATCCCTGAAATTGTGTTTATGAGCTGCCTTTTTGGTTATTTGATCTTGCTGATCTTCTATAAGTGGACAGCCTATGATGCAACCACTTCTAAAGATGCTCCAAGCCTCCTTATTGCCTTCATCAACATGTGTCTTTTTAACTACAACGATCCAACTAATAAAGCTCTGTACAGTGGACAgATGGGTATCCAGTCTCTGTTGGTGGTTATTGCTATGAGCTGTGTTCCCTGTATGTTGGTGGTGAAGACGATGGTGCTCCGTCGTCAGCACCTATGGAAAAAGCACTTGTCCCAGATGAGGGAGGCAAGCCCTGCTCAGAAAGTAGAAACTTTAGAGCAAGCAGGCACCAGCTCATCCACCGGACTCACTCAACAGGGCACACAGAAGTTTGGGGGAGTCCGGGTCGGGAACGGACCCACTGAGGATGAGGCTGAGATCATTGAGCACGACCAGCTATCCCAGCATTCTGATGACGCAGATGAGCATTCGGAGGAAGAACcgTTTAACTTTGGGGATGTAGCAGTCCACCAGGCCATCCATACCATTGAATACTGTCTTGGTTGCATTTCCAACACTGCTTCCTACTTGCGTCTCTGGGCTCTTAGCTTGGCTCATGCACAACTGTCAGAGGTGCTATGGGGAATGGTGATGCACATGGGCCTGGCCTCCAAGAGTGGTGGTGGATTCTTCGGCTTGACTATTATTTTCCCAGCCTTTGCCACACTTACAGTGTGTATTCTGCTTGTCATGGAGGGTCTGTCTGCCTTCCTACATGCTCTGAGACTGCACTGGGTGGAATTCCAGAACAAGTTCTACACAGGCCAGGGCTTCAAGTTTGTGCCCTTCTCATTTGACAGCATCCTGGAGGGCCGCTTCGATGATTAAAACCACAATTCACACTCCCAACAGACTGCAAGCCTTCATAGCATTCTCTTTTGCATGGATCTGGTCCTGATATTCCTATATCAGGAGAGCTTTTCTTGTGAATTGTGTGTAAGTTGTAACCTTCGACTTTCCAAATGGCCACTAGAAAATCATTGTGTTGGGTATTTTATGTCTTGTTCTTAGCAGATTTACATTAatggtttctaaaaaaaatatcagtgttcagtgtttatttaaagccCTTGAGTGaaatatgtgtgatgtgtgatattgTTAAGCACAGTGACAGCAGTAGATGTAAGTCTGATGTTGCTAATATTCTGAACTACAATATTTTGAGGTCATATCttagggccatattcagagtctGTGGTTACTCACGTTCAGAGACAAGTTATGGAGCTGCTTTAAATTTTCTGGGCTCCCccttcagattattaaaatcatctgcatgtagttcacacctctgagcCAAATGTTTTTTGAGTAGCAGTGTCTGAGACAAGACAGGGTTTTCAGTAGAGTCCTGACCACCACCATTAAACGCAAGCACTCCCCTTTAAGCCCAAAAATAATCAGGGGTAGACAATGTGAACTGGAGaaggaaatagcattttttcccctatgttgtcaaatgtaatatgatgtaacataaatgcaagagacaatttaaaaatggaaaaaaaagactaatacaatATGTGAATGAGAAGATTGTGAGCACTGAAATAAATcctgctgcatgaatagttctACTGTAGTTGTTTAATTGTAAATTTAATGAAGCTATACTAAATGAAGGACATGACATCATGATGTGTGCGTGGGATATAGGCAATTTTAATATGCATTTAGTTCACTATTTTGatttttcaatttaataaaataatgacaattttttcatttaatgcactctcctgtaaagaaaacatgcccacaGTTAAGGATAAGCTGATCATGCAGCCATCTGCTatgcttacagctcactttacgtaagttttcttaattttatccataaaaacataaatttcaacGTGACATATtttggttacatcaaactgtcagatagTGGCACTGGATTTAATATTGCTCCTCACTCAAGGTGATATCACACAATAAAATTGGGCTTAACTCCAATGACAATCACACATAACTGAGACACATCTCTTTTTTCGGCAAACTTCACCCTACAGACACAAATACCACACTGTCTGAATAGTGATATGCAAAATGTTCTGTATTAAATCCTCCCTACACACATAACTCTGAATATTGCCCTTGGTGAATAATCCAGTGAAAATATCAGCATGGTAGTTCAATATCATTcctaaatatatgaatataacaaatataataaagtgaTTTGATTTTAAGGTAGTAAATATAAGAATTAAGCAGCTATAAGAATTATGCCATTTCTAAACCTAcccaaattattaaaaatctcACTGGAGTGGTTAAAGCACTTTTGAAAGTAACAAGGTATACAGGATTCTCATCTCCCCATGGAAAATTCTCATTATATTGTAAATGGGCCTTGCTGATCACTCTTTCTATCATCAGCAGTGGTTTTGGTATTGGAAAATGACTGCCTTAGGAAAGGAAGCAGAAGCAGATGTTTCCCCTGTAAACAGTGAGATGATCAAGCCCAGAATTCTTTAAGTCTGACTTCACTTCTCTCAGAAGGAATGAGTGCAATTCACATTATCTTCTTGGGAGTGAGAACATGGGTTGCGGTGATTGGTTCCAGACAATGGATCTGTCTCAAGGTCCCATCACAGGTTCCCAGGTCCacagttaaattaaattgttaatagcagctataaaaacaaTCATATCTATTCCTCTTCAAGGCAGAATAGACATTCCACATTCATTGATGTCAGTAGTTTTTAAACTCTGTGTATTGTTCTCTGTATTGGAAGGTTGTATTTTATAAAGGTTTTTGTCTATTGGTGTATGCACATATCATAGAAGATGACCACTGAGTTGTTTATTGGTGTTTGGGAAAAATATTAAGTACATCTCTAGAGGAGTTTCACTATTAAAGAGATCTGCTGGGTAAAGCCA

Function

GO: NA

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389908 lncRNA upstream 11519 8652436 ~ 8665836 (+) True G329111
TU389845 lncRNA upstream 298621 8374954 ~ 8378734 (+) False osr2
TU389833 lncRNA upstream 340773 8336352 ~ 8336582 (+) True G329042
TU389774 lncRNA upstream 413319 8257525 ~ 8264036 (+) True G328995
TU389722 lncRNA upstream 460701 8216446 ~ 8216654 (+) True G328944
TU390105 lncRNA downstream 2850 8748820 ~ 8749033 (+) True G329288
TU390192 lncRNA downstream 196908 8942878 ~ 8945556 (+) True G329354
TU390202 lncRNA downstream 227267 8973237 ~ 8973587 (+) True G329361
TU390394 lncRNA downstream 589216 9335186 ~ 9335808 (+) True G329523
TU390393 lncRNA downstream 606180 9352150 ~ 9352733 (+) True G329522
XM_026923965.2 mRNA upstream 98281 8558567 ~ 8579074 (+) True LOC113532557
XM_034298179.1 mRNA upstream 127117 8388187 ~ 8550238 (+) False LOC113532774
XM_034298177.1 mRNA upstream 127117 8388187 ~ 8550238 (+) True LOC113532774
XM_034298178.1 mRNA upstream 127117 8388187 ~ 8550238 (+) False LOC113532774
XM_034298180.1 mRNA upstream 160089 8388187 ~ 8517266 (+) False LOC113532774
XM_034297944.1 mRNA downstream 22776 8768746 ~ 8821311 (+) True LOC113532648
XM_034297945.1 mRNA downstream 22776 8768746 ~ 8821311 (+) False LOC113532648
XM_034297946.1 mRNA downstream 22776 8768746 ~ 8821311 (+) False LOC113532648
XM_034298068.1 mRNA downstream 93596 8839566 ~ 8851316 (+) True zgc:101569
XM_034298066.1 mRNA downstream 105434 8851404 ~ 8922793 (+) True bmp6
TU389909 other upstream 11519 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 192522 8388187 ~ 8484833 (+) False LOC113532774
TU389428 other upstream 774747 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 3339104 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3747201 4924786 ~ 4930154 (+) True srsf10a
XR_004576949.1 other downstream 22775 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 22776 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 107358 8853328 ~ 8856276 (+) False bmp6
TU390686 other downstream 1045714 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 1685363 10431333 ~ 10432864 (+) True G330038

Expression Profile