RNA id: XM_026924146.2


Basic Information

Item Value
RNA id XM_026924146.2
length 4452
RNA type mRNA
GC content 0.43
exon number 25
gene id epb41b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7905872 ~ 7924253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATCTCAGCTGTAACGTCATGAAAGCTTGAGTTGCGTCCTGCCTCGCTGGTTTCTGAAGCAAGCGAATGAAGTGAGAGCTAACGAACATTTCACTTGATCAGGAGAGTAAAGATGACAACGTTCCGTTGCCGAGTTATACTTTTGGATGACACTGTCATTGAGCGGGACCTGGAGAAAAAAGCCTTGGGCCAGGTTCTGTTTGATAAAGTCTGTGAGCATCTCAACCTGCTGGAGAAGGACTATTTTGGCCTGGCAGCATGGGATTCATCCAATAACAAGGTGTGGCTGGACGTTTCTAAACAGGTTCACAAGCAGATTATACGTCAAGATGCTACATTTACATTCAGTGTCAAGTTTTACCCACCTGACCCTTCTGTACTGACTGAGGACATCACAAGataCTTACTGTGTCTTCAGCTAAGGGCAGACATCCTGACTAGCCGTCTGCCCTGTCCGTCAGATGTGTTGGCAGTTCTGGGATCCTACACAATCCAGTCGGAATTTGGAGATTATAATCCTGAACTACATGGGAAAGAGTTCTTCAGTAACATTCCCCTTGCACCCAATCAGACTCCAGAGCTGGAAGAGAAAGTGACAGAGCTGCATCGCACACTCAGATCCATGAGTCCTGCTGAAGCAGATCAGCTTTTCCTGCAGAATGTCAAGACGCTCGACATGTACGGAGTACACCTGCATCCTGCTAAGGATGCCAGTGGAGCAGATGTGATGCTGGGGGTATGTGCTGATGGTCTAGCGGTGTATGAAGGTGAGGAAAAGACACAGACTTTCATCTGGCCTAACGTTCTGAATATGTCTTACAAGCGCAGCAACTTCCATGCCAGGATTATACACTCAGAGGATGCAACTGAGAATACCATCAAATTCAGTTTGCCCAGCTACCGTGCCTGCAAATGCCTGTGGAGAAATGCTGTGGAGCATCATGCCTTCTTCAGGAACCTTGAGGAGCAAGACAAGGTCAAAGAGGGGCTGCTACATTTGGGTTCTAAGTTTCGCTTCCACGGGAGCACTCATGCAGAATCTCTCAAGGCCAGCTCCACCATCGAGCGACCAGCTCCACACTTTTCACGCTCAGGCATCAAGAGAAAAGCAAAAGAAAGCTATCTTATGGCTTTGAAGCGCCCATACCAAACCGAGGTTGACGATTGGTTCCAAGTGCTTGGCTCTGATGAATCATGGCCCACTTATGGCCCAGACAAGGGCGAACTGACAGGTGGAGAGACCCTTGCttataaagaaagagaggaagtggATAAGCTGGATGACGAGTGGTTTCAGCTATTGGGTGGGCGCTACTTTCCCACTCAGCATTCTTTGTCATCCTTAAGTTCAGATACTGATATTTTAGAAAGTGCTACATTCCAGCTTTGGAAACTACAAGCTGATGACTGGTTTGTCCTCCTCAAACCCCACACTTATCAACCCACTTTTTGGCACTGGAAGACCATACCATCGTCTCTACAGTCCTCTCAAGctgaagagcagagagaagagCTGGAATGGATAGAAAGAACCTCAGAGATGGGTATAAAGGAtgacaaaataagaaaagaggTTGAGGCTGTGACAGAACGTCATGAGGAACTGGAAATGGAAAGAAACCTAATGAGACCAGACGTTGCTGAAGAAAATCTAAAGCTGGATATTGAAGCCAGTGAGCAAATACTGAAAGTTATGAGGAAAAAGATAGAACAAGAGGGGGATGGAGAGGAATTACAAACAGTAGTAATGTATGAACAGAGAACACAGGAAGTAGAACCTCATACTGGACAATTTCAGGAGTTTTTTGTTGAGCAAAGTATGAGAGGGATGGAGGTAGTAGACACAGTACATGAATTGATGTTAAAGACAGGTCAAGTAGTGTCTGAGGAAAATATAGAGGAATTAGAGGAAACATTACTAGAAGTGGAAAGTATTGAACAAAGACTGGAGGACATACAAAGGCTGAAAGTCAGATTACAGGAAGTAGACATTTTGCAGCAAAAACTAGAAGAAGTGCAGCAGGCAAGAAGACAACGAGGGGAGAGCGACGACTGGTACGTTCTGCTGGAGCACAAACTGATGGAATCTTTAGCACCTACAAGAATACTAGTAGTGGAAACCTCTGAACAAAAGCTGCAGgacatagaaaagaaaagacaagaacAAAGACAGAGAGGTGATTGGTACCTTTTGCTGGATCGCAAACCCTTGGTGATATCTTCAGCAAGTGCAGCAGAGCAAAAAGCAGAGATTAGACAGTGGATAGAGGCGGAACTCCAAAGAGCAAACACTATAACACCTGTCCAGATGAAAGATGACTGGTACATTTTGCTGGAATTGCTTCCACAGACCATTCAACCTACACTGCCTCCATCAGAGATTGATATCCAGTCATCTCGGGTACGTGTGGTAGAGGAGCACAAAAACTTGGGCGAGGAAAAGgaatggagagaggagagagtcattaatgtgagagaaacacaacCAATGTTACCAGCACAAAGAGAagaacagacacagaaacagaaggATGATGACTGGTTTATCCAGCAGGATGTTTCTCCTAAAGAAGGTGGTGTTTACAAAGAGACCAGAGAGGAGGAAGCACAGCTAGtcaaaaaggaaggaaagaagataATATttgaggagaagagaagagaaatgataGAAACATCTCATGAAATGGTTCAGATGAATCCAATACCTTTCACTCCTTCAGTGCCTATGACACTGATCTCTGAAGATACAGCAGGCCTGAGACCTCATCAAACAGTCAAGATCGAGGAAAAGGAAGTAATCTTTGACAAGAAGCCAATGATCATCAGAGAGGAGCAAGTGATAGTAGGAgaagtggaaaagaaaaatcctGCTATAAGGCGTGAGGATGAAGACGactggtttgtgtttttttcaccaGCACAGTTTGAGAAGATGGCCGTTGCCACAGCAAGAGGCCATGTGGTAGAGGACAGAAGACTTTATCCATATGTGCCTGGACCAAAAGCAGCAGCGTATCATAGAGAGGGGATTGATGACTGGTTCATCATGTTTGAGCCTGTTTCTAAAAAatcagTGAGCGTGGACAGGAGAGCTGAGGAGGACCAGGCTAGGAAGGAGGAGTTGTTTAAGAAGAAAGCCATGGCAGAAGACAGACGAAAAGTGACAGgattcaAACCTCCTTCAGTTCCTGTCATTCCACTGACTCCAGCTGACCAGCCAATGACATCGACTCCCACTGCACAGTCTGTTCGCATCACAAGACCCACCTATGAAGAAGAGAGTCTAAAGAGACTAGACATCACACAGGAGATCACACAAGACATAACGCAAGAATCTAAGGTGGAAACAGAGTCCATCATAAAGAGAAAGagaagagagaagagaattGAGGGTGAATCCATTTATATCCGTCACAGCATTCTAATGTTAGAGGATTCTGATGTGATTCAGGATGTGGTGTTGAGGCATCATGCCAGCATCAGCGAGTTAAAGCGCATCTTTATGGAGGATATGCCTGTGTCTGGCCCCACTGAGTGGGACAGGCGTCTCTCAACATACATTCCTGTTGTCTACCCCCAATTATCCAATGGCGAGCTATTTACTGGCATAGACATAaTGGGAGCAGATGAATTGGTGGCCGTGTGATGTCTCTCCACCCTGTAATACAGAGCGAATCCTCTGTCATATTAACAGATAGGCAGCCAGAAcccctttttttctccatttcatcAATGACACATTGCTATTATTACTTGGTAATATAACCTGtatacagtttttatttttatgtgcagTAAATACTATAGAGCATATATATTGTAATACTTCCCGTTTCAGTGGTTTGTTGGTCTAATGCAGCTTTCTAATGTCTGGTAATGGATATGAGGCTATCACTGTCTATGTAGGCTTGTCAGTATTCAGTAGCCACATTTTGAAAGTTGTGGAAgatcaaaaatcaaaatcaaaaatgtGTGTAGGATTGTTTGGGTAATTTTAGCATTATGTCAGTCATCagtgaagaaataaaatgatcagaatTAAACCCCAAACTCAGACAAGATGATTTTTGAGATTGCAGGAGTTTTTCAGCTGGTGTCATCAGGATCTTGGACTGGTTGCTGAActgcttttattgtcattatgtGTATAGGtgtggttattaaaaaaaataataaaataaaataaattaaaaattagacTTAGATTCATTTTGAAAGTACCAAGTTATAGTttgtttattaggtttagaGCCTGTATATGGAGATAACACAAAATTCCACTTACAGTTTGTTTGTACTTACatgttttgttgatttattCTTGTCATGACTATTTTATTTGGCATAAAGTCTGTTAAAACACTAAGACATTGTATTGATTCAATATATATGTTTCAAAAGAAATTGCTGACGTAACTTCTGAGCTTTGATAAATATGGCCCAGGATGTGA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044464 obsolete cell part cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389297 lncRNA upstream 246793 7657141 ~ 7659079 (+) True G328620
TU389095 lncRNA upstream 513424 7392241 ~ 7392448 (+) True G328441
TU389077 lncRNA upstream 532372 7373280 ~ 7373500 (+) True G328427
TU388944 lncRNA upstream 637110 7267734 ~ 7268762 (+) False G328313
TU389473 lncRNA downstream 181009 8105262 ~ 8105462 (+) True G328750
TU389477 lncRNA downstream 210827 8135080 ~ 8135455 (+) True G328754
TU389478 lncRNA downstream 211264 8135517 ~ 8136163 (+) True G328755
TU389722 lncRNA downstream 292193 8216446 ~ 8216654 (+) True G328944
TU389774 lncRNA downstream 333272 8257525 ~ 8264036 (+) True G328995
XM_034298015.1 mRNA upstream 3311 7901515 ~ 7902561 (+) True LOC113532663
XM_026924762.2 mRNA upstream 8563 7890628 ~ 7897309 (+) True trim35-28
XM_026924055.2 mRNA upstream 322041 7578989 ~ 7583831 (+) True ino80c
XM_034298069.1 mRNA upstream 454685 7426279 ~ 7451187 (+) True tmem245
XM_034298070.1 mRNA upstream 454685 7426280 ~ 7451187 (+) False tmem245
XM_026924475.2 mRNA downstream 47365 7971618 ~ 8009770 (+) True ptpn3
XM_026924476.2 mRNA downstream 85648 8009901 ~ 8045225 (+) True epb41l4b
XM_026924477.2 mRNA downstream 86287 8010540 ~ 8045225 (+) False epb41l4b
XM_026924322.2 mRNA downstream 148214 8072467 ~ 8095509 (+) True virma
XM_026924323.2 mRNA downstream 148214 8072467 ~ 8095509 (+) False virma
TU389428 other upstream 3264 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 2567621 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 2975718 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 2982191 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 3892334 4011410 ~ 4013538 (+) False hamp
XR_004576973.1 other downstream 463934 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 690820 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 844492 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 844493 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 929075 8853328 ~ 8856276 (+) False bmp6

Expression Profile