RNA id: XM_026924162.2


Basic Information

Item Value
RNA id XM_026924162.2
length 3464
RNA type mRNA
GC content 0.40
exon number 2
gene id cavin1b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8652432 ~ 8665855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATTCGACCATTTGTGTTCCTGCACTCCTGCTGCACAGAGCCTTGAAAGCACAGAGTGTGAGCTGACAAGTGTGGTATTTCTCAGGAAAACAGCAGAAAGTGTTCAAACAAGAGGAAGCAACCCAAGGTAAACTCCAGAGCACACACAAGGACACATAAAAAGCTGAAAATCCCATCTCTTTCACTGCTCCATTCTTTTACCTGTGGTTTGAAACTTTTGTCATGGAAGTGCTAGAAGTCCCCAGCCTGCAGCCAGACACTGAGCAGCACAAGACCCTCACTGAGATCTCTGACGATGAGCTCAACCTTCCTCCCtctgatgatgaggaagaggcAACCACAGAGGCCAAATCAAAGGAAGTTGTGGAGAAAGAGGAGGCAGAGGAAGGAGACAAAGGCAATGGCCAGATGAATGGGGTGATGATCCTGGCTCTGCTGGATAAGATCATTGGTAGAGTAGACCAGATCCAGCAGACGCAGGCCGGCCTGGAGGCCCGGCAGCAAGAGATGGAGCGCTCGGTCACTGGGATTGAGGGGGAGCTCACCAAGTTAACCAAGAGTCACACTACCACAGCCAACTCGGTGAACAAGATGTTAGAAAAAGTGCGCAAAGTGAGCGTGAATGTGAAGACAGTGCGCAGTAACCTGGAGAAGCAGGGCAGCCAGATAAAGCGGCTAGAGAGCAATGAGAATGAGCTTCTCAAGAGGAGAAACTTTAAAGTCATGATTTACCAGGATGAGGTGAAACTTCCCTCTAAGACCACAGTGGCCAAGTCCCTGAAAGTGCCCCAGCCAGCAGAGGGTGAGGGCGAGCTGGAGCTCAAAGCTGCTATGGAGGAGGGTGAAGAGGCTGGAGGAGAGAAGGCTCATCTAGACCTGTCGTCTGATGAAGAAGAAGTAGAGATTGAGGAGACCATTGAAGAGACCCGAGCAGAACGCATCAAACGCAGCAGCCTTCAACGGgttcaaaatatcaaaacagtCTTCTCCAAGGAAAAGATGGagaaaaccaaacaaaagaCGAAGGAGAACCTTGAGAAAACCAAGCAAAAAACCAAAGAGAACTTGGAGAAGACACGAATGAAGACCAAAGAAAACTTGGAAAAAACCAAGCAAAAGACCAAAGAGAACTTGGAGAAGACTAGGCAGAAGacacgggagaacctggaaaAGACACGCCACAACATTGAGAAGAAAATGGGCAAGCTCAGCACTCGTATGTCTGTCAACCCAGAGCGTAAAGAGAAGCTGAAAAGCTCGCAGAAGAAGATGGTGAAGTCTTTCACGCCTGATCACACCATTTATGCTCGGTCAAAAACTGCTGTGTATAAGGTACCACCATTCACCTTTCATGTGAAGAAAATCCGTGAAGGGGAGGTGGAAATCCAAGGCACAGAAATGGTGGAAGTGGGTGGGGAAACAGAGGAAGTAGAGAATGGAGTaatggagggaggagaggaagaagagatggagatggagggaggagagatgggagagatggaggagagtgCTGAGATGCTGGAGACAGGAGAAGATTCGGAGCTGGTGCTTGCAGAGCAGGATCATGATAGAGACAGTGACTagatggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaggggcGTAAGCTGGGAGACTGCTGTATACTGCAGATTCAGGTATTAGAGGTTGTTCATAGATGTTCATATGATTCATAGGAATCATAGGTGTGGGTGTatgagtatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtatgtgtgtgtgtctgtgtctgtgtccatgaagaaaagatgagaggaagaaaagatgaGAAGTCTCACCATGGTTGTAGACAAGTTAAAGTCTCATTTCAAATGATTGTTGACAGTATAAGGTTTGGCCTATATACTAGTTTAGGTAAGCTGATTGCTCAGCTAATTTGCAGCAAAGTTTGGGGTAAGGACTCAGTGAAATGGCAACAAGTTCGTTAAGAAGTGTAAGCCAAAACATAAGGATCATGACatttgtaaaaatatgtttaaagaaaaacattcattgTTAATTAATGTACTAACAACACACATACTTATCTACAGCTAGTCTAGTTAGCAAACACTGTTTGACTTAATATACGAACATGTTTCACTTATGCAAGAGAGGAAAACCAACAAATTCTTCTAATATTTTGCGTATATTCATATCAGaaatttctgtttaatattatttctttatttttggaGACACAGTTACTGCATTCTTTTGTTACACTGAaattttgttatgttttattaatctaTATCAATCTACATGTTACATTAATGATTTTAACCACCAGCCCCATGTGGCTGCTTGGCACATTTCTATTAGAGCAATCATCACCACAGCACTATGATCTCCTAACAATACAAATCccacaaacacaacaatatgAATTTTAAAGTCTTGATGACTCTTAGTAAAGACATTCTGTTGGTCTTGGTGCCTATTCCTATCTGTGTTATAACTGAGACtgatattaaaaatttttttacaaagaGTTGGCTGAGGACTAGAatatttgaggaaaaaaatagacattaatttaatttaagtgtTGGATTTATGTTAAAACCAGGGTGTCTTCAGTGGGAAAATTTAATAGTATTTCAAAATATTGTAAactgaagaacaaaaaatatatctgtgtcctttccatttttaaaagaagtttCTACATAATTTCTACTTCTTCTAATGTTACCATTATCTATTGATGAAGCACttatgtattttgtgtatttctcACAAAAATAGTCTGTTTACTTACTACGGTTCATCAACTTGATGTTTTTTCTGATGAGGTAAAAAGGTAAATTTGGGGAAAATATATGGGAAAATTtaaggggaataaaaaaaaagctatttgcttttgaaaatgtagtgataTAAAAAGTGAAGCTGACAAACATTTGTACTTCAATAAAGTAGAAGTATTACCAAAATGTACTTAAGCATGATATGCATAAATagtatttctattttattttatacaccaCTGCTGCCAATATACAGTAACAGTAAGTCTCTGTTCCAGTCATGTGGACAACATGCACTACTTATTTTAATCCCTATTTAGGTGCTGAGTCTGGAGTATTAGAGCACAAACAAAATGTGCATTGCATGGAGTTCCACAGGACTGTGAACGTGTACCACTGCATTATGGagaacattttgtaattttaatctTTGAAAGCATCACCAAGCCACCtttatcttttatttctgttaattaGTCACCATTCATCTTTCCTAGTTGCCAAATACCGTATTTACCTTTTCACATTTTAGATGtgcacattttactttgtttagtCTATATTTTGCTTTGCAACTGATATGTATGTATCTCAGAATGTCTCACTGCATACTAATATGTTAATAAAAGCAGACTCATTCACATTCA

Function

GO:

id name namespace
GO:0030903 notochord development biological_process

KEGG:

id description
K19387 PTRF; polymerase I and transcript release factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390020 lncRNA downstream 25983 8619227 ~ 8626449 (-) True G329211
XR_004576942.1 lncRNA downstream 76308 8573144 ~ 8576124 (-) True LOC117595772
TU389840 lncRNA downstream 300791 8351232 ~ 8351641 (-) True G329049
TU389830 lncRNA downstream 318256 8333831 ~ 8334176 (-) True G329039
TU389718 lncRNA downstream 437178 8212756 ~ 8215254 (-) True G328942
TU390107 lncRNA upstream 84987 8750842 ~ 8751044 (-) True G329290
XR_004576950.1 lncRNA upstream 157335 8823190 ~ 8838994 (-) True LOC117595776
TU390255 lncRNA upstream 181630 8847485 ~ 8851312 (-) True G329404
TU390289 lncRNA upstream 254425 8920280 ~ 8921013 (-) True G329438
TU390299 lncRNA upstream 276282 8942137 ~ 8942358 (-) True G329447
XM_026924820.2 mRNA downstream 5923 8589264 ~ 8646509 (-) True rpgrip1
XM_026924035.2 mRNA downstream 330272 8308408 ~ 8322160 (-) True LOC113532599
XM_026924034.2 mRNA downstream 330279 8308408 ~ 8322153 (-) False LOC113532599
XM_026924033.2 mRNA downstream 330279 8308408 ~ 8322153 (-) False LOC113532599
XM_026924518.2 mRNA downstream 367712 8273940 ~ 8284720 (-) False fzd6
XM_026924128.2 mRNA upstream 164992 8830847 ~ 8836831 (-) True si:dkey-197c15.6
XM_034298134.1 mRNA upstream 278530 8944385 ~ 8955194 (-) True txndc5
XM_026923926.2 mRNA upstream 296917 8962772 ~ 8967175 (-) True bloc1s5
XM_026923927.2 mRNA upstream 298562 8964417 ~ 8967175 (-) False bloc1s5
XM_034298003.1 mRNA upstream 785519 9451374 ~ 9472412 (-) True mak
TU389089 other downstream 1266126 7378780 ~ 7386306 (-) False sec61b
TU388974 other downstream 1590004 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 2222500 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003403372.2 other downstream 2674053 5829474 ~ 5978379 (-) False zfpm2a
XR_003404173.1 other upstream 1618979 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 1856877 10522732 ~ 10523263 (-) True G330185
XR_003404157.2 other upstream 2257271 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 2416413 11082268 ~ 11083151 (-) True G330379
TU392350 other upstream 4010726 12676581 ~ 12677933 (-) False LOC113541288

Expression Profile