RNA id: XM_026924169.2


Basic Information

Item Value
RNA id XM_026924169.2
length 2991
RNA type mRNA
GC content 0.53
exon number 29
gene id adam22
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5415932 ~ 5492739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCGCGCGCCGCAGCCGCGCCGCTCCGTATATTCCCCTCATGTATATTCATACGGCATTTCTGCAGTGAGGCGGCTCGGTAACAGCCTACTGACGTCTCTCAGGAGGAGGTGGTTCCGGTGAAGGAAGCTGAAACTGGCCTCGACTCGTCGCCGTCCCGCTAGAGCGCGCGATGCGGAGGCTGCGCCAGCGTCGCTAATGGCAACCAGCGCGAGAGAGCGCGTCGGCCAGACGAACGGAGCGCGCGGGGGGACGCGTGTGAGCCGCCATTGAAGAGGACAcgcttaaaataaacaaaccagaaaaaaaaacagcaacaaagaaAAGCAGCGCGCAGGGTTCGGTGTCGGTCGCGTGCGGTTGTCTGCTCGGGAGGATTTGGTGATGATGGCTTCCACACTGGGGCTTtggctcgtgtgtgtgtgcggagcGCTGGGTATTAGCGCGCGACATTCCACCAATGGAGGCGTCTTGGGGAAGACGAGGGCCTTGCGTGATGAGAGCAGGTTCCTCGGGAGAGAGAGCACGGTCCCGGTCCGGCTGGTTTATCGCACGGATCACGGACAGACCGCGCATGACGTCCTGAGCACACGGGTGCGCGCGAGCCCCGGCGCCGACCAGAAGAATCATTTGGCCCAAGCCAGTTTCCAGGTGAAAGCCTTCGACCAGACTTTCATCCTAGACGTGGAACTAAATCATGACCTGCTGTCATCAAAGTATGTGGAGAGGCATATATCAGAGGACGGGAAACCATTCATCACCAAAGGTGGGGAGCACTGTTACTACCATGGAACGGTACGAGATATTCCCGAGTCCTTTGTGGCGCTGTCCACTTGCCATGGAATgcaCGGGATGTTTTTCGATGGAAATCACACGTACCTGATAGAACCGGATGAAGAGGGCAAGGAGAATGAACACGTCCAAGTGCACATGATCTATAAATCTCCAGGCTTCCAGCCTCCTTGGGATTACATCCGACCCCTTGAACTTGCAGAGTCGCCGTTCCAGAGCCCTCCACTCTTCACTGGAGCAGCGcacaggagaaaaaagagacaaGTGTTGCAAAGTTCCCACAGTGTTGAGGATGAGACTAAATATATCGAGCTGATGGTTATCAATGACCACCTGATGTACAAGAAGCATCGGCTTTCAGTTGGCCAGACGAACAACTACGCCAAGTCTGTAGTGAACATGGCAGATTTTATTTTCAAGGAGCAACTGAACACCCGGATTGTTCTGGTTGCCATGGAAACCTGGGCAGCGGACAACAGGTTCAACATAAATGATGACCCGATGATCACACTGCGGGAGTTCATGAAGTACAGACGTGACTTCATTAAGGAGAAGAGCGACTCTGTCCATCTGTTCTCGGGCAACCGTTTCCATAGCAGCTGGGGTGGAGCCTCCTATATGGGAGGGGTGTGTTCACTGACTAAAGGGGGAGGAGTTAATGAGtatgGAAAAACAGAGGAAATGGCCATCACGCTGGCACAGTCTCTGGGACAGAACATTGGCATTTTCTCTGACAAGAAGAGAATACTAAATGgggAATGCAAGTGCGATGATAAATGGTCCGGCTGTATAATGGATGATGTCGGcttttatcTGCCCAAGAGATTCTCCGACTGTAACATAGAGGAGTACCACAACTTCCTGTACAGCGGGGGTGGATCGTGTCTCTTTAACAAACCCTCCAAGCTTTTGGACCCTCCAGAGTGTGGGAACGGTTTTGTGGAGCCGGGAGAGGAGTGTGACTGTGGAACTCCAGCGgagtGTGCTAGAGAAGGAGAGAACTGCTGTAAGAAGTGCACTCTGACTCAGGGCTCTAAATGCAGTAATGGGCTCTGTTGCAATAACTGTCAGATGGAGTTTATGGGTGTGATCTGCAGAGAGGCTGTCAATGACTGTGATATACCAGAAAACTGCACTGGGAACTCCAGCCAGTGTCCatcaaatgtacacaaaatGGATGGCTATACTTGTGAGAAAGATCAGGGACGGTGCTTTAATGGACGATGCAAAACTAAAGACAGGCAGTGCAAGTACATCTGGGGAGAGAAGGCAACATCTGCAGATAAGTTCTGTTACGAGAAGCTAAACATCGAGGGAACTGAGAAAGGGAACTGTGGGAGGGACAAGGACACCTGGGTCCAGTGTAAAAAGCaggATGTGCAGTGTGGATACCTGCTGTGCTCAAACATCTCACCTGCACCCAGACTGGGAGAGCTGCAGGGAGGCCTGACCTCATTTTCTGTGGCCCAACATAGTGCTTCACTAGACTGCAGtgGAGGACATGTGATGATTGATGGAGACACTGATCTGGGGTACGTGGAGGATGGCACAGCGTGTGGCACTGACCGTATCTGCTTCAACCACAAATGCCTTCCGGTTCAGGATTTCAACTTCAGCACCTGCCCCGGGACCACCGACAAGGTCATCTGCTCCGGACACGGGGTGTGCAGCAAtgaactgaagtgtgtgtgtcacctggGCTGGGCAGGTGAAGACTGTAACTCCTCATCACCACTCAGCTACCTGGTGGTGGGACCTACAGCTACATCATCAGgcATCATCAGTACTAACATCATCATCGGTGCCATTGCAGGATCCATTCTCGTTCTGGCTCTTATACTAGCCATATCTGCCTGGGGCTACAAGAACTACAGACAGCGGCAATTTGCAGAATCTGAAGTGCATCGAAGATTCTGTCGACAAATGCCACCGGGTGATTACGTGAAGAAGCCGGGCGACGCCGACTCGTTCTACAGCGACGTGCCGCAGGGCGTGAGCTCCAACTCAGGCAGCAGCTCCAAGAAGAGGTCCAATGGCTTGTCCCATTCCTGGAGTGAGAGAATCCCAGACGCCAAGCACATTTCTGATATCTGTGAAAATGGTCGGCCCAGGAGCAACTCATGGCAAGGGAATATTAGCGGCAACAGGAAGAAGCTGAAAGGAAAGAAGTTCCGTCCTCGTTCCAACTCCACAGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387473 lncRNA upstream 101345 5311231 ~ 5314589 (+) False acbd7
TU386838 lncRNA upstream 386144 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 426618 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 432254 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 491298 4924178 ~ 4924636 (+) True G326440
TU387573 lncRNA downstream 55890 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 120402 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 347525 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 356751 5842219 ~ 5842438 (+) True G327391
TU388624 lncRNA downstream 1162812 6648280 ~ 6708779 (+) True G328024
XM_026924768.2 mRNA upstream 4884 5400933 ~ 5411050 (+) False dbf4
XM_026924767.2 mRNA upstream 4884 5400934 ~ 5411050 (+) False dbf4
XM_026924766.2 mRNA upstream 4884 5400935 ~ 5411050 (+) True dbf4
XM_026923890.2 mRNA upstream 29308 5356184 ~ 5386626 (+) False rundc3b
XM_026924674.2 mRNA downstream 61083 5546551 ~ 5547833 (+) True mrpl32
XM_026923952.2 mRNA downstream 64757 5550225 ~ 5553304 (+) True ccdc127a
XM_026923902.2 mRNA downstream 80178 5565646 ~ 5583027 (+) True rnf144b
XM_026924003.2 mRNA downstream 98948 5584416 ~ 5591733 (+) True LOC113532582
XM_034297883.1 mRNA downstream 99419 5584887 ~ 5591733 (+) False LOC113532582
TU387482 other upstream 77683 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 485780 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 492253 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1402396 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2846195 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 2416324 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 2902719 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3129605 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3283277 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 3283278 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile