RNA id: XM_026924189.2


Basic Information

Item Value
RNA id XM_026924189.2
length 7385
RNA type mRNA
GC content 0.48
exon number 19
gene id syngap1b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1796355 ~ 1898390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGAGGACTGAGGCGCACTTCCGCTAAAATTTACAACTTTCAAATATCATTAACATTTTGGAATAACTATCAGAAAtaatatctgatttttttttttttaaatatatgacgCACTTACTTGTTTGAATTTTCTATAATGTTAAGCTGTAACATAAACATCTAGCACTTAAGCGAGCTTCTACGGTTACGTTCTTGTAGTTAACGTACTCTTTCATGCTTAAGTAGTTAGCATACGCTTACACTCTTCCGTAGTTTGGGATACTCTTACACTCTTAAGTTGTTAGCATACTCTTATATTCTTGTGTAGTCAGCATACAATTGCCGTTAGCATACTCTTACATACTCTTACAATCGTATGTAGTTAGCATACTCTTACATTCTTGTGTAGTTAGCAAACAATTACACTCTTATGTTGTTAGCATACTCTTACACACTTATGTATTTAGCATACCCTTATACTCTTATGTAGTTAGCATACTCTTACACTCTTATGTATTTAGCATACCCTTATACTCTTATGTAGTTAGCATACTCTTACACTCTTATGTATTTAGCATACCCTTATACTCTTATGTAGTTAGCATACTCTTACACTCTTAGGTATTTAGCATACCCTTATACTCTTATGTAGTTAGCATACTCTTATAGTCATATGTAGTCAGGATACTCTTACACTCTTATGTTGTTAGCATACTTTTAATATAATTAGCATACATAGCCTAACCCTATGTACTCTTTCTACATGTAGAATAAGCTTTAGCCTTACCGAATATGTAAAGTTTATGTACTTAGAAAATGTCATAAACTCATAGGCTCAGTTTCAGTGAGAAGTTTAGCTGCTTTGTTTACAGTTCAAAGACCTGGATATTTTGACTAGCTAGTTAAGGACTTAGCATTAGCGCGTTAGTGCATGACTTAGCTAGCTCTTGAGGTAGCACTCAATGAGACTTGTTTAATGGATGAATACATTGTTGTCTGTGACAATACAGTGCGTAATTAAGCGTTTATTAAGCATTTagtgtcttatttatttcaactgTTTCAAGTGTATGGCCGCATAGAAACAGACACAAACGCTAACTGATCACAGTCGAACATGACGAACAGATCTAGCGGAGCGTTAAGCGTACTGAAGGAATGTAACTGGAATCAAAACTCAAACCGTGTCAGAGTTCAAGACGTCGAGACACCTCAAGTAAAAACTCACAACAGTGCTTTGTGGCACGTAACTGCTTTTCCATCCAGCGTGCAGGATCTGAGGACGACTGAAGGAATCGTTTACAAGGACTGAGGAATTCCATTACATCAGCAACATTTCTGCTGTAGaccACGCCCGCCTCAGGCGGAAAAGCATCGCCACTGGGCGTCAGCCGAGCATGGAGACCCCTCCCATTGCCCCCCCTCAACCCTTCCGACAATCCAGTTTTCTCGGCCGAAGGCTGAAGGGGTCTATTAAACGAGCAAAGAGTCAGCCCAAGCTGGACCGCACCAGCAGCTTCCGCCAAATGATCCTCCCACGATTCCGCAGCGCTGATCAGGACAGGACTCGTCTGATGCAGAGCTTCAAAGAGTCTCATTCCCATGAATCCCTGCTGTCTCCCAGTAGTGCGGCTGAGGCACTGGACCTCACGCTGGACGAGGACGCCATCATCAAACCGGTTCACTCCAGCATTTTAGGGCAGGAGTACTGCTTTGAGGTGACGACTGCTTCGGGAACAAAGTGCTTTGCTTGTCGGTCGGCTGCAGAAAGAGACAAATGGATCGAGAATTTACAGAGAGCTGTGAAACCCAACAAAGACAACAGCCGGAGGGTGGACAATGTCTTGAAGCTCTGGATCATTGAGGCCCGGGAGCTGCCGCCCAAAAAACGCTACTACTGTGAACTGTGTTTGGACGACATGCTGTACGCACGCACCACCAGCAAACCCCGCACCGACACTGTCTTCTGGGGCGAGCACTTCGAGTTCAACAACCTCCCGGCTGTTCGCAACCTCCGGCTTCATCTCTACAAAGAAACGGACAAAAAAAGACGTAAGGAGAAAAGCACATATCTGGGACTAGTCAGCATCCCCATATCCAGCATCACTGGTCGACAGTTTGTAGAGCAATGGTACCCTGTGATTCAGCCCAGTGTCCTGGCCAAGGGAGGGGGTGTGGGAGGGGGTAAAATCATCAATGCCTCTTTGCGGCTCAAGTCTCGCTACCAGACCATGAGCATCCTGCCAATGGAACTGTACAAAGAATTTGCCGAGTACGTCACCAACAACTATCGGACGCTGTGTGCAGTTTTGGAGCCTCTGCTGAGTGTCAAAAGCAAGGAGGAGGTAGcctgtgcactggtgcacatcCTACAAAGCACAGGGAAGGCAAAGGACTTTCTTTCAGACATGGCGATGTGTGAGGTAGACCGATTCATTGACCGAGAGCACCTTATATTCCGAGAGAACACCTTAGCCACCAAAGCTATAGAAGAGTACCTCAAACTCATCGGACATAAGTACCTCAAGGATGCTTTAGGTGACTTCATCCGAGCGCTGTATGAGTCAGAGGAGAACTGCGAGGTTGATCCCATGAGGACTCCACCTTCTGTTCTACTGGACCATCAGGCGAATCTTCGCATGTGTTGTGAGCTTGCTCTCTGCAAAATCGTCAACTCACATTGCGTTTTTCCACGTGAGCTGAAGGAGGTCTTTGCGTCTTGGCGAGTACGCTGTGCagagagggggagggaggaCATTGCTGACCGCCTGATCAGTGGCTCCCTCTTCCTGCGCTTCCTTTGTCCAGCCGTCATGTCCCCATCGTTATTCAACCTCACCCAGGAATACCCGGATGAGCAGACATCACGCACGCTCACCCTCATAGCCAAAGTGCTGCAGAACCTCGCTAACTTCTCCAAGTTTGGCAGTAAGGAGGAGTATATGTGCTTCATGAATGAGTTTTTAGAGATGGAGTGGGGCTCCATGCAGCAGTTCCTGTATGAGATCTCCAATCTAGACAGTATAAGCAATGCTGGGGCTTTTGAGGGATACATTGACCTGGGAAGAGAGCTTTCGGTCCTACACAGCCTCCTGTGGGAGGTCATGGCTCAGCTCAGTAAGGATGCCATTATCAAACTCGGACCATTACCCCGTCTCCTGAATGACATCAGCATGGCCCTTCGCAATCCTCATCTCCAAAGGCAGCCCAGtcaccagacagacagacagcctccggaaagacagacagaccgGTTACTCTCTAGACCCAGCTTCAACAGGGGAATCTCCTCCGAGTTTCAGAACCTCATGATGAGGGACCTTAACAGTTCCATAGATATCACTCGCTTGCCTTCTCCAACCTCCGCCATGTCCAGCGGTGTCGTTCCTCCATCGCGAGCTGGAATGGGTGGATACGTTGATCGGGATCATCCGCACCGGGCCTCTTCTAAAGATGTTTTCTACGTCACCCGTCCCCCGCTGGCCCGGTCCAGTCCTGCGTACTGTACGAGCAGCTCCGATATCACCGACCCAGACCCAAAGGTTCTGACTGTTAATGAAAGTATTTCTATGATGGACCTCCAGGACTCAAGAATGAACAGCGTCTCTAACCTGCAGTCTGTGGGGGACATGCTCAACTCTCCCCAGGCCTCACTTGCCGGGTTCGGTGGccttggtggtgctggaggaGGCCTCGGAGGTCAGCTGCGCGCCGGCGGAGGGCGGATGTCAGCCGGCTCAGGTGGCTCCAGTGTGTCCGGCGGCCTGCGACTAAGCCAGCTGAGCCAGACGGGGACCGCCACCGACTCGCTgtcccagcagcagcagcagcaggccgCCGCACTCCGCTACCCTCTCTCCTTCCAGAACCCTCTGTTCCACATGGCCTCTGACGGGCCTCAACTCCAGCGCCAGCACAGTCGTGCTCAGGTGCCTCCACCCCTCCTGCTGGCTCCGGAGCCAGACTCCTCCCACCCTGCATACTTGCCGCAGTTCGCCCGCGGCGCCTTCTCCCGGAGCGAAGACCTCTCCACGCTGAGACCTGGACCACACCTCGGCCAGCCCAGCATTGTCCACTCCCACAGCTACAGCGACGAATACAGCCGGGGAGATTACGCCCGACGGCAACTCTCTATGCACATGCAGGAAAacctccagcagcagcagatgaTGGGCATGGCCTCACAGACGGGCACGTCTCATTCCTCGCTCGCCTCGCCTCCCACCACTGTCCAGCCTGTCCGTCAGAGCTCCATGGCTCCGCCTCCCACACAGCGCATGAAGTCTCAAACCTCCcatcagctctctgtgagcgcGGCTGCCGGTGCCACGCCCCCCAGCAAGACGAGGCCTCAGAGCGGAAACCTGCTCCAGTCTCCTGAGTCGGGCTTCGGGGGCAGGCAGCAGGGCCCGCGGCAGCAGCTGTCCGTCAAGGATAACACTGCCCCCGGCCTTCCTCATCAGCACAGCTCCACCCGCGAGAGCCAGGGATCTCAGGGTTCTCAGGGGGGAACACCACAGTCAACGCAGCAGTCTCACAAGGAGCGGCAACACTCGCAGCAGCACTTACTCAAGCCTTCCATCAGCAAACAGGGCTCATCTCCCAACACTTTGAACCCGCCCACCCCTGCCTCAGAAAGGACCGTCGCCTGGGTGTCCAACATGCCACACCTTTCCGCAGATATTGAGAGCTCACGCATCGAGAGAGAAGATTTTAAGCTTAAGGAGTACTCCAAAAGCATGGACGAGTCACGTTTAGATCGGGTACGGGAGTATGAGGAGGAGATCCAGTCTCTGAAGGAGCGTCTGATGATGTCCCACCGCAAGCTAGAGGAATATGAGCGGAGGCTAATCACTCAGGAGCAGCAGACCAACAAGATCCTGCTGCAGTACCAGAGCCGGCTGGAGGACAGCGAGAGGAGGCTGAGGCAACAGCAGGTGGAGAAGGACTCCCAGATTAAAGGAATAATCGACAGACTCATGGCGGTGGAGGACGAGCTGAGGGGAGGGGTAGCATCAGAGCACAAAGCCAGGATGTTTGCAGATCAGGAAGAGCAGCTTCCCTCCCTGGGTTCTCCAGACCCCGGTGTGAGTGTTGGCGGAGGAGAAATGAGCGCCGCTCCTGCCTTTGGAGTCTCACCCTCGGACATCTCCTCCGACAACCCGCCCCAGAACGGAGGCCCGCCCCCCAAAGTAGCTTCTCCCACCCACTCCCAACTTCATACACACGTCAGCCGGAACGGAGAGATGCGCGCCAACCAAAAAGCCTCTATGGCAAACGGGACCACAACAACATCAAACATGGGAAGCGGATTAGAAGGAGGGGGAGCAGGTCTCTAACGGCGCTACGCCAATCCGAATGAAGAACGATAACGTCCCTTACTTCTGccctttttcagcattttttttctgcatgagGCACATCTTTATTGGGAGGCGCTCATCCTTACACCATCCACACCAAACTACTAAAGGGCTCTCCAGTGGATGGATCTCATATTTCCTTTTGactaatgtaaaaaaacaaaacacaacttttCCATCGTATACTCCTCTGGAATGACATCGTATGGTGGTGTCCAGTGAACCAAATGTGGGTGATTCTTGTGAATGATCTGAATTCCtgaatttagtttttttgttttttaaacaatcagCTGGGTAACTGACCTCTTGAGTGCTGTGTGAAACAAAAAGACATATaattctctaaaaaaaaaaaaagtgggtaAAAGGTCTAAACCTGTTCAGAAAACGCCAGCTTTCAAGGCCTTCTGAAGCAGATACGCTCGTATTGTCATGTCGTCTGGCTTCCTTAGTGCCTTCTCTGCATCCTTCAACAGGGTTTTCAAACAAGCAACAGAATAACAATCTCAACACCATGTTTCCATTTCGCATCTCGCATCTCGCTCGTTCACGTTAAAGTGACTTGGACGATATTGTGATCTGGAACAGGGAAACGTTTTCAgagttttttctttcaaaagcaGAAGaagtggtttctttttttttttttagactttaaCATCACGCTTAATGAGAAGTGCTCTTGGTCTTCGAAATTTGAAATGAAGGAAGCTGCCTCAGTAGACTTGCTGGACTTGTGCAATGTTTTTCTCTTCTCAATCTCAGAACCTGTGTGTGATCAACTGGTGCTAtagattaagaaaaaaaacagtgatattTCAGAAATCTGTCTCATAGCACTGCCTCCCATTAATGCCCCGCCCCCTTCACCCCCAACTCCTTGTTGTCCATTTGTCTTGCCATGCTGTTCATTGCTCCTCTGAATGTTCAGTGTTTCATGAATGCAATGTGAGGTGGTCTCTGTCAGGTTGTCTTCATATCAAAATACGACAGTAGGCCAATAACAGAGGAACTGATCATACTGTAAACAAtatctttttgcattttttttggcttgCGTTTTACAGTATGTTTATTAATAAGTATTCCCAATGGTGTAGGGTTTGACACAAGGGACTAATAAGTGACAGTGCAATTACGTTTCTTTGTAGGCTATAGTTtattaggcttttttttaaaaagtagctCAACCTGTAGTAAACATTTCAGCTATAATTATACAGAGGTGCCAGTACTAACTGTCCTAACTTAATCATAACAAGCatatggaataaaacagaattttacaaaaaaaaactaacgtATGTCACTGGACGTAATggccagggtttttttttcaggtgtgtgccaagcaacagtaagaagACAAAAGTTTGGTGAAActgctacttaataataatcagctactgaatattttttaactGACGAGAAACACCACAACCCTGCCTTCTTggtttctattggctcacaagcaCGAGGCTCGTGAAATCACAGGTCAACTTCCACCTAGATAAAGTCTGTGAAATGAAAGTAACCACTTCCAGAAGCAGCTGCTCCCCTTGTGTGTCCTCCGTCCTTTCTCCTTCAGTGAACTGACTTAATTTGCATTTGTTCTGAATGCTCATTTAGCTAAAAGCTTGTATTTAGCTTGATTTAGCTTGTAGGAGTTTAGCAAAGATTTAGTTAGCAAccgtaaatgttggcacctctgatTACAGTGCCCAAACTTTTACCTTGACAAATTTGCACATACAATAGCTCTACCTTATAatcttatatactgtataggaTCATGTCACGTGTCTGCAGATTTTGTTAGATTTCATGTCCATTTTATTCATGTTATCATGATAAACCTGTTATACTGTCATAATCATGACAAGACCTGGCTTATCCAATGCAGCAGGCTTTGAAATGTCTTTTGTAACTAATTTGTTGTAAGCCTATAGGCCTTATAGGACTCATGCTTGTGCTGCGAAGCACTCGACTCGAGTTGGAACTGAGTgttgattgtaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K17631 SYNGAP, RASA5; Ras/Rap GTPase-activating protein SynGAP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385013 lncRNA upstream 107431 1735619 ~ 1739255 (+) True G324889
TU384946 lncRNA upstream 178843 1667560 ~ 1667843 (+) True G324842
TU384934 lncRNA upstream 190825 1655128 ~ 1655861 (+) True G324831
TU384935 lncRNA upstream 193096 1652671 ~ 1653590 (+) True G324832
TU384931 lncRNA upstream 195748 1650037 ~ 1650938 (+) True G324830
TU385084 lncRNA downstream 3686 1899643 ~ 1902697 (+) False smg5
TU385089 lncRNA downstream 31123 1927080 ~ 1932326 (+) True G324947
TU385237 lncRNA downstream 97299 1993256 ~ 2011981 (+) False G325076
XR_004576937.1 lncRNA downstream 104180 2000137 ~ 2001004 (+) True LOC117595767
TU385235 lncRNA downstream 113377 2009334 ~ 2011981 (+) True G325076
XM_034297931.1 mRNA upstream 58402 1770828 ~ 1788284 (+) False phf1
XM_034297933.1 mRNA upstream 58402 1770840 ~ 1788284 (+) False phf1
XM_034297930.1 mRNA upstream 58402 1771145 ~ 1788284 (+) True phf1
XM_034297932.1 mRNA upstream 58402 1771145 ~ 1788284 (+) False phf1
XM_026924961.2 mRNA upstream 112555 1724131 ~ 1734131 (+) True dnase2
XM_034298254.1 mRNA downstream 3669 1899626 ~ 1919710 (+) True smg5
XM_026924081.2 mRNA downstream 29625 1925582 ~ 1943290 (+) True paqr6
XM_026923877.2 mRNA downstream 118654 2014611 ~ 2019052 (+) True rbm8a
XM_026924481.2 mRNA downstream 125458 2021415 ~ 2055739 (+) True otud7b
XM_026924482.2 mRNA downstream 125458 2021415 ~ 2055739 (+) False otud7b
TU384187 other upstream 683072 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 836463 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 1040158 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 1098211 745673 ~ 748475 (+) True G324206
TU384064 other upstream 1236677 607612 ~ 610009 (+) False G324161
TU385279 other downstream 246549 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 314265 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 314265 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 669743 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 2115453 4011410 ~ 4013538 (+) False hamp

Expression Profile