RNA id: XM_026924201.2


Basic Information

Item Value
RNA id XM_026924201.2
length 3975
RNA type mRNA
GC content 0.46
exon number 22
gene id abcb4
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5332129 ~ 5349833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGGGCACATTAATTCAGTCCATCAGCACCTTTTTAACAGGCTTCATCATTGGCTTTATCAAAGGCTGGAAGCTCACCCTTGTCATCATCTCCATAAGCCCCCTGCTAGGCATCTCAGGTGCTGTCATTACCAAGTGATGACCTCATTCACGTCGAGGGAGCAGACAGCATATGCGAAAGCTGGAGCTGTAGCTGAAGAGGTGCTGTCTGCCATCAGAACTGTCTTTGCCTTTGGAGGACAGAAGAAGGAACTAaagagGTATCAGAAAAACCTGGAAGAAGCCAAGAACGTTGGTATAAAGAAAGCCATTACAGTAAACATTGCTGTGGGTTTCACATACTTCATGATCTACATCTCCTACGCTCTGTCCTTCTGGTATGGCAGCACGCTGATTTTCGCTGGAGAGTATGACATCGGAACACTCCTGACAGTTTTTTTCGCTGTTGTGATTGGAGCATTCGGCCTTGGCCAGACCTCTCCTAACATTCAAGCGTTTTCTAGCGCACGAGGGGCTGCTCACAAGGTTTTTAACATCATCGATCATAAATCCAGCATCAACAGTTTCTCAGATGAAGGCCACAAACCCGACATGGTCAAAGGAAATATTGAGTTCAAAGACGTTCACTTTAGCTACCCTTCGCGGCAGGATGTGAAAGTCCTAAATGGCGTGAATCTTAAGATCAGCAGTGGACAGACTATTGCTCTTGTAGGGAGCAGCGGTTGTGGTAAAAGTACAACAGTCCAACTGATTCAGCGCTTCTACGACCCCCAAGAAGGAGCAGTGAGTATAGATGGCCATGACATTCGCACTCTGAACGTGCGTTGTCTGAGGGAGATGATCGGCGTTGTGAGTCAGGAGCCCGTTCTTTTTGCCACCACAATTGCCGAGAACATTCGATATGGCCGTGAGGATGTGACGCAGGAGGAGATAGAGCAGGCCACGCGTGAAGCCAATGCTTATGATTTCATCATGAAACTTCCTGATAAATTTGAGACTCTGGTGGGAGACAGAGGCACACAGATGAGTGGAGGACAGAAACAGCGAATTGCCATCGCCCGAGCTCTTGTGCGCAATCCCAAGATCCTCCTGTTGGATGAGGCAACATCAGCTTTGGACACAGAAAGTGAGGCGATTGTACAAGCAGCCCTGGATAAGGTGAGACTTGGCAGGACGACCATCATAGTGGCCCACCGTTTGTCCACTATCCGCAATGCTGACGTCATCGCTGGATTCCAGAACGGGAACATTGTAGAGCTCGGCACACACGATGAACtgatggagagaaagggagtCTACCACTCACTGGTCACTATGCAGACGTTTAAGAGCACAGAAGCCACAGAATTAAAAGCAGAGGAGGCAGGGCTGGATGAGAAGAGCCCCTCTACCACGTCtgtgacagaacacacactctacagaCAGAAATCCAAGAGTTTCATTGGCTCAGAGAAAGGCCAGGAGGATGAACTCAAAGATTCAGCACAGGAGGAAAAGGTCCCAGAAGTGTCATTCTTCAGAGTACTGAGTCTGAATAAGGCAGAATGGCCCTACATGGTGGTGGGCATCTTCTGTGCGATCATCAATGGGGGCCTGCAGCCTGCTTTTGCTGTTATCTTCTCCAAAATCACTGCTgtGTTTGCTGAGGTAAACGAGGACATTAAAAGGGAAAAGGCGAATCTCTTCTCACTGCTGTTTGCTATCATTGGGGTGGTTTCCTTCATCGCTCTTTTCTTACAGGGTTTCTGTTTTGGGAAAGCTGGTGAGATTCTGACCATGAGACTGAGGTACAGAGCCTTTAAATCCATGATGAGACAGgacCTAGGTTGGTATGATGACCCTAAGAATAGTGTGGGAGCACTGACGACCAGACTGGCCACAGACACTGCTCAAGTGCAGGGTGCAACGGGGTTGAGACTGGCCACATTGGCTCAGAATGTGGCCAACCTTGGCACTGCAATCATCATCTCGTTTGTGTACGGCTGGCAGCTCaccctcctcatcctctccaTTGTGCCAGTTATGGCTGTAGCAGGAGCTATTCAAATGAAGTTGTTAGGAGGCCATGCTGCAAAGGACAAGAAGGAGTTAGAGCAAGCTGGAAAGatTGCTACTGAAGCCATAGAAAATATCCGCACAGTCGTATCATTGACCAGAGAGAGGAAGTTTGAGAGTCTTTACCAGCAGAACCTAATTGTTCCATACAAgaatgCTCAGAAGAAGGCACATATCTTTGgctttactttctctttttcccaAGCCATGATCTACTTTGCCTATGCAGGCTGCTTCAAGTTTGGTGCATGGCTCATTGAGCAGAAAATGATGACGTTTGAGGGTGTTTTTCTtgtaatcTCAGCTGTAATATATGGAGCCATGGCAATGGGAGAAGCCAACTCCTTTACTCCAAACTACGCCAAGGCTAAGATGTCGGCCTCCCATATCCTAATGCTCATCAATCGAGTGCCAGATATCGACAATGACTCAGAGAAGGGAGAAAAGCCGGATCACTTCGAAGGGAATGTGCGCTTTCAGGATGTGAAATTTAGATATCCGTCACGGCCAGACGTGCCTGTACTGCAGGGCCTGCGGCTCAGAGTGAAGAAGGGTCAGACCCTTGCTCTGGTGGGCAGCAGCGGCTGTGGCAAGAGTACCACCATACAGCTGCTGGAGAGATTTTACGATCCCCTAGAAGGCACagtgATGCTAGATGATAACAACGTCAAACAGCTAAACATCCACTGGCTGCGCTCTCAGATTGGTATTGTATCCCAAGAGCCTGTGCTATTTGACTGCAGCCTGGCCGAGAACATCGCATACGGAGATAATAGCAGGCAGGTCGCTCAGGAGGAGATCGAACAAGCTGCCAAGGCTGCCAATATACACTCTTTCGTAGAGGGGCTTCCACAGCAATATCAGACTCAGGCAGGTGATAAAGGCACTCAGCTGTCAGGCGGACAGAAGCAGCGCATCGCTATTGCTAGAGCCATCCTGCGCAACCCCAAACTGCTGCTACTGGACGAGGCCACATCGGCTCTTGACACAGAAAGTGAAAAGATCGTGCAAGAAGCCTTGGATAAGGCTCGTGAGGGTCGTACCTGCATCATAGTGGCTCACCGGCTGTCCACCATCAAGAATGCTGATGTTATTGCTGTGTTTCAGAATGGTGTGGTGGTGGAGCAgggcacacacaaacagctccTCAGCCAGCAGGGGGTTTACTACACCCTCGTCAATTCCCAAATGGGTTACAGCAAATAGGCAACTACTTGAGAAGAATGACAGGGAATCAGGATGTTTTATGCAGTATGGAAATTTAACTTTACTGCAAAGAGGAATGGGGTTGATCATAACATTTGAGATGATCTGTTATGTAAGACAGGATTTAGATGAGGTCGtaagatttaatatttaaaagctgTAATAGATGTGGTAGAGGAAAAACCATGGTCACAGTAAGAAAAGTGACATGGACAGAAGACTACTGAAGATGTTAGTACTTTTAAAATAACCTCTGTCTGCTGGACATGTACTCACTTCTAATCTGTAAGTTTATTTAACTATTTCACTCACTCAGTTCAGCTTCATAATCAGTTACAATCCATAATACAACTAAAcgcatttattaaaataacaatttagcCACACACTTCCAATCATAATGACAGGGAGAGATATGGAGTCTGATTTACAGCGAGCCAAAATGTGCCACAGAAGTAATAAGAATCATTGGCTACTTTGTGTTTGGCAAGTTTGAATGTATGTAATTATGactaatacatatttatttaaattaaggaaggtttataaagaaaacaggttttcaaaaataaaaattggttctgaattattattaattcttataattattattaaagttctGTGATGGCACTGTATTGTGTTCTAATAGGGcacaaatgtttttatactggctagctacttttttttggaataaaGTTTCACTTATTTACATTT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387478 lncRNA downstream 17474 5314207 ~ 5314655 (-) True G326995
TU387472 lncRNA downstream 21864 5310049 ~ 5310265 (-) True G326989
TU387455 lncRNA downstream 36897 5294732 ~ 5295232 (-) True G326981
TU387428 lncRNA downstream 74853 5257051 ~ 5257276 (-) True G326960
TU387426 lncRNA downstream 76118 5255795 ~ 5256011 (-) True G326958
TU387604 lncRNA upstream 46339 5392222 ~ 5393582 (-) True G327100
TU387897 lncRNA upstream 392654 5738537 ~ 5739588 (-) True G327362
TU388044 lncRNA upstream 490187 5836070 ~ 5836306 (-) True G327505
TU388046 lncRNA upstream 491606 5837489 ~ 5837782 (-) True G327507
TU388047 lncRNA upstream 492000 5837883 ~ 5838277 (-) True G327508
XM_034298072.1 mRNA downstream 23025 5307441 ~ 5309104 (-) False rpp38
XM_026924203.2 mRNA downstream 23025 5307441 ~ 5309104 (-) True rpp38
XM_026924952.2 mRNA downstream 115829 5205561 ~ 5216300 (-) True si:dkey-65b12.6
XM_034297836.1 mRNA downstream 153111 5178282 ~ 5179018 (-) True LOC117595762
XM_034297835.1 mRNA downstream 163503 5167096 ~ 5168626 (-) True LOC117595761
XM_034298176.1 mRNA upstream 45534 5391417 ~ 5400856 (-) False slc25a40
XM_026924771.2 mRNA upstream 45534 5391417 ~ 5400844 (-) False slc25a40
XM_026924770.2 mRNA upstream 45534 5391417 ~ 5400844 (-) True slc25a40
XM_026924172.2 mRNA upstream 112350 5458233 ~ 5463036 (-) True cldn12
XM_034297800.1 mRNA upstream 147346 5493229 ~ 5512596 (-) True washc5
TU387192 other downstream 354602 4963617 ~ 4977527 (-) False ubr5
TU387191 other downstream 354676 4963617 ~ 4977453 (-) False ubr5
TU386070 other downstream 2092982 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 3234694 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 3881413 1429932 ~ 1450716 (-) False kif13a
XR_003403372.2 other upstream 483591 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 530213 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 1083977 6429860 ~ 6429932 (-) True trnam-cau_47
TU388974 other upstream 1710911 7056794 ~ 7062428 (-) True G328342
TU389089 other upstream 2032897 7378780 ~ 7386306 (-) False sec61b

Expression Profile