RNA id: XM_026924202.2


Basic Information

Item Value
RNA id XM_026924202.2
length 2557
RNA type mRNA
GC content 0.46
exon number 12
gene id nmt2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5298302 ~ 5307139 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGCGCTGTTACTACAGTAAGCTTCACTCGCCCGTTAGAGCCTTTCTCTCCATCCGTGATGGCGGAGGACAGCGAGTCAGCGGCCAGCCAGCAGAGCCTGGAGCTGGACGACCAGGACACCTGCGGCATCGACGGAGACAACGAAGaggaaaatgaacacacacaaggGAGTCCTGGTGGAGACCTTGGTgcgaagaagaaaaagaagaaacagaagaggaagaaagaaaaacctaGCTCAGGAGGAACCAAGTCTGATTCTGCCTCTGATTCTCAGGAGATAAAGaATCCAGCCATTCCCATGCAGAAGCTGCAGGACATTCAGAGGGCGATGGAGCTGCTGTCTACGTGTCAAGGACCTGCCAAGAACATAGACGAGGCCACTAAGCACAAGTACCAGTTCTGGGACACTCAGCCTGTCCCTAAGCTCAACGAGGTGGTGACCACCCACGGGCCGATTGAGCCGGATAAGGAAAATGTCCGACAGGAGCCATATTCCCTCCCGCAAGGTTTTATGTGGGACACACTGGATCTCAGCAATGCTgaagtgCTGAAGGAGCTGTACACGCTGCTGAATGAGAATTACGTTGAGGATGATGACAATATGTTCAGATTTGACTATTCTCCTAACTTTCTCAAATGGGCACTGCGCCCGCCTGGCTGGCTGCCTCATTGGCACTGTGGCGTGAGAGTCTCATCCAACAAGAAGCTGGTGGGCTTCATCAGTGCCATTCCTGCTGACATCCACATCTACGACACGTTAAAGAAGATGGTAGAGATCAACTTCCTGTGTGTGCATAAAAAGCTTCGCTCCAAGCGTGTAGCTCCGGTTCTGATCCGAGAGATCACGCGCCGGGTCAACCTAGAGGGCATTTTCCAGGCGGTCTACACCGCTGGGGTGGTACTGCCCAAACCTGTCTCCACATGCAgGTACTGGCATCGCTCTCTCAACCCAAGGAAGCTTGTAGAGGTGAAATTTTCCCACCTTAGCAGAAACATGACACTACAAAGAACCATGAAGCTCTACAGGTTACCTGATAGTACGCGCACTCCTGGGTTGAGGCCGATGGCGGCTGGTGATGTGCAGCAGGTGACGGCGCTGCTGCAGAAATACCTGAGCCAGTTCCACCTGCAGCCCGTCATGGGGGAGGAGGAGGTGCAGCACTGGTTCCTCCCGCAGGAGAACATCATCGACACATACGTGGTGGAGGGTTCTGGTGGCACATTGACTGACTTCATCAGTTTCTACACGCTGCCGTCCACAGTGATGCACCACCCGCTGCACAAAAGCCTAAAGGCAGCTTACTCTTTCTACAACGTGCACACGGAGACACCGCTGATAGATCTGATGAACGATGCGCTCATCCTTGCAAAACTGAAAGGCTTTGATGTTTTTAATGCTCTGGATTTAATGGAGAATAAGACTTTCCTGGAAAAGCTCAAGTTTGGAATTGGAGATGGGAACCTTCAGTATTACCTTTATAACTGGAAATGTCCCGGTATGGAGCCTGAGAAGGTTGGCCTCGTGCTACAGTAACCAGCTGCTACATTCAGGTCCACGGGACACGGGCAGTagttaaaacaaaacatgaagaaaatcCATTCAGTGAATGAGTTCCATCGTGCAGCTCTCTTAGGTCTCATTTTTGTTATGAGAGATTCTCTCGTTAATTTTTCCTCTCTAAATATCGGCAGAATGTGAAAAGCATCAGCTTCAGACTGTCTTCttcatactgtatacacaatTCTTTTCTTAAGACATGCATcaactattgttttttttttttttaaaatgcacataCAAGATAGACAAGCGCACGTCTTTCAGATGATCGGTTAACTCCCTCAAGcccttttcctttattttgttcCGAATCAGTGTGAAAGAACTAGAACCTGTATAGTTAATATGCGATATTTATTACGTGTTGTGGTTTACAAAGGGGCTGAGAAAGAGGGCAGGGTCACATCCAAAGTCTTTACCGTGGAACTCTGAGTAGTTCTGGCTctctgctgggttttgctgcataCATGTAAAGAAtgtatcactttttttttttcccgaagCACAACATGCTCTTAATAGAGCTTGGATGCTCTAGTGCATGTTGAAGATGATTTAtcctttgtgttttgtgtttagtgtttaggtCATGAGTGTGTGCAAACCTAGAAGAATGTGAAGCCTCGTTTTAAATTTTGTTCACTCCGCAGTGTTTAGTCTGTTATTTCAAACAATTCTGATATTTAGAATTGTATTTaagttatatatatgtatcattCGTCAATCGTAAGGACAAACGTTCAGTGATACATTTGCCGGCATGTGCtgggaattttcacacacaagcacaaaagAAGCAGACGAGACGAACAATCACGTGCGCATCGTCACTTTGATGATTGCGCAGTCTTTCTAGCTCCGCTTTCCCTGTGCTTCTGGTTATATGCAGCTGAAAACTTGCTCATTACTTGATTTAATCGCTGTTACATGGGactttcaaaaagaaaaaaaaaaaaagctttttttataCAGTAGAAAATGCCTTTGTGTTC

Function

GO:

id name namespace
GO:0006499 N-terminal protein myristoylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity molecular_function

KEGG:

id description
K00671 NMT; glycylpeptide N-tetradecanoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386838 lncRNA upstream 268512 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 308986 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 314622 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 373666 4924178 ~ 4924636 (+) True G326440
TU386800 lncRNA upstream 494243 4803837 ~ 4804059 (+) True G326429
TU387473 lncRNA downstream 4092 5311231 ~ 5314589 (+) False acbd7
TU387573 lncRNA downstream 234219 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 298731 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 525854 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 535080 5842219 ~ 5842438 (+) True G327391
XM_026924452.2 mRNA upstream 3559 5260438 ~ 5294743 (+) True fam171a1
XM_026924393.2 mRNA upstream 39743 5254686 ~ 5258559 (+) True LOC113532775
XM_034298250.1 mRNA upstream 43750 5248910 ~ 5254552 (+) False LOC113532776
XM_026924395.2 mRNA upstream 43750 5248913 ~ 5254552 (+) False LOC113532776
XM_026924394.2 mRNA upstream 43750 5248915 ~ 5254552 (+) True LOC113532776
XM_026924204.2 mRNA downstream 4070 5311209 ~ 5314614 (+) True acbd7
XM_034298071.1 mRNA downstream 10059 5317198 ~ 5331214 (+) True crot
XM_026923889.2 mRNA downstream 49043 5356182 ~ 5386626 (+) False rundc3b
XM_026923887.2 mRNA downstream 49045 5356184 ~ 5386626 (+) True rundc3b
XM_026923890.2 mRNA downstream 49045 5356184 ~ 5386626 (+) False rundc3b
TU386814 other upstream 368148 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 374621 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1284764 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2728563 2565700 ~ 2569739 (+) False G325435
XR_003403390.2 other upstream 3084041 2210222 ~ 2214261 (+) False LOC113533074
TU387482 other downstream 25129 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2594653 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3081048 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3307934 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3461606 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile