RNA id: XM_034297852.1


Basic Information

Item Value
RNA id XM_034297852.1
length 3073
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC113532705
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7141490 ~ 7154574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCTGCTCAATGTGGCAACACACCGCATGCGCTTAGAGCAGGAAAACTACGCGTGAACGCGTTCTGGAAAATGAACAGAATGGAGGCATCAGCTCAAGTACACACTTATCACCTGAAACAGAAGAACATTGACAAGAAAAAGCAGCAGGTCTACAGTGGGGACATAGTGTTCACCAAGCATGGATCAGTTCAGACTATACCTTCCCTGTCCAAACGGCTGAGAACTGTCACAGACCCAGTTCTTGgcctaCAGTATGTATGGGAGTATCGCAGCCCCAGCAAGTCAGTCCCTCCTCATTACCAGTGTAGATTATGTAAGGTGCAGCAGCTACAGAATGAAATGGTGGCTCATATTACTGGATGGAAGCATTGTTTCAGATACATGAAACACGCTCACCCAGAAAAAGTGTCCCACAAAGAAGAGGAAGTAAAACAGGACCCAGACACCAAGAGGGCAGTCAGAGCGATTGCTGCTGAGGTGGAGAAAGCTGAGGGCAGAGGTCAAATCAAGgttatgATTAGGGAACCTGGTGATGTACCAGTCTTTCAGAACATGAAGTCTGCATATCCCAGTACGGGAGGACCAGGTGCTACAAGTCTGCTTGGACCAATTCCTGGAGGTTTTCACCCCGCAGGTGGACCTTTTGGTGGTGGTTTTTCACAACCccccttcccagaagagttccCAGCTCGGGGTGGCATGATGACAGATTTTCCTCCCAACATGCATGGTGGTCCAGGTGATGTTCCCATGAGTGGACTCTCCAGCTCTGGCCACTATGGACCAGACAGGATGATGGGAGGTCCAGAGAGCATGCAGCATTTATCCAACAGCAGATCAATGCACATGGGCTCAGACAGATTTGGGATGGGTCCACGAAGCGAGGACATGGGCAGAGCTTACCTTGATGATCTGCCAATGAACGGCAGCGATAGAATGATGAGAGCTAAAGGCCCAGAGTCCAACAACACCCTCACAACACTTCTCAGATATCTGGATGCATTCCGCATTGAGTGTGAAGATGATGCTCAGATTGTGCTGAAGATCACGCAGAAGCTCACGGATGTCTTGATGGAGTACCGTCTCAGGACTATCTCCTCGGGATCTAGAATGaattcttcccacctcccaccAAGCTCTGACAGATTCTCCGACAATATGTCAGgTCCTTCAAGATTCTATAACTGAACAGCCCATGTGATGCTGTCCTACAtactttcattttcttcatgtGGCAACTGTTTTAATGTATAGTCCCCTTCTAAAGTATTGGTACAGCAAGGtcaaatcttttattattttttagtttattttttattaattttattattttattttttttgctatatattgaagacatttgggtttgagatcaaaagatgaatatgagatgatagatcagaattccagctttaatttcctgatatttacagcaGGATGTGTCAAATAACTTATAAtgtggcacctttggtggcagaccacccagttGTCAGGTGAGCAagtagtcttaaagtaaatagcacttaatatttggttgtatatcccttgcttgcaataactgcatcaagccagcgaCCCACTGATGGGCTTGATGCTCTTCCAgacttgtaccacagcttctttcagttgttgtttgttttctctcttcagtctccatttcaggaggtgaaatgcatggtctattgggttaaggtctggtgattgacttggacCGTGTAAAACTTTCCAATTTTTTCACCgttgaagtcctttgttgtgttggcagtgtgatttggatcattgtctagctgcatgatgaagttcctctcaATTAGAttagatgcatttctctgtaaattggcagacagaatgtttctgtagacttctgaattcattttgcTGAGTTATATTATCAGTAGAGATTAGTGAGTCCATTCCAGCAGCAGCCAtgaagcccaagccatgacactacctccactgtacttgaccgatgagcttgcATGTTTAtgtcatgagcagatcctttccttctccacacTCAGGCCTTTCCATCACGttggtagaggttcatcttggttCTAGAACTTTTGTGGCccatctctgtatttttttgcaaattccaatctggccttctgattcttactggtgatgagtggtttgcatcttgtgatatggcctctatatttctgctctcaaagtctttttcaaatggtggattgggataccttcacccctgccctgtggaggttgttgatgatgtcagtgactgatgtttttgggtttttcgtCACAGTTCTCACAGTGTTTCTTTCATCAACTGCTGCTATTCAATAGTTGGCTGGTTGTTAGtataccagtggtttctttctttttcaggacattccaaatgttgtattggctatgcccaatgcttgtgcaatggctctgatcccttctttttttagatttttagattcagctctttggtcttcatgtaggtttatcctttttaacaagaaatgcagtcttcacaggtgaaacgcAGGGCTTAACCTAAGAGTAGACTTTCAGCTATTacttgtttaaacaatcaagcTAACAGAGCACACcggggcaacaagaaacacctgtcagtcacatgttccaatatttttgatcacttcaTAAACGGATGGgatcaaacaaaaggtgccttgttctaagttgtttaaaatatctacatgtaaatatcaagaaaagAAAGGTGTAATTCTGAACTATCGTCTCATGTTCATcgtttgatctcaaacccagatgACTTCAttgtaaagcaaaaataaatcaattggCCTTGCAGTTcaaatactttcagaggggactttACTTCTCAGTACAaatctttttgtattttatcttttaatttaatGCCAAATCCCTTAGACTTAAATAAGGGTCTTGTGTTTGTAGTGTCTTCTGATTTGCAGGACATTCCCTTAAAATACCTTACATCAGGTTGCTACAGGATTATTCTGAATTTAGTTATAGATTAATAAACCTAATGTTTATAGGTTTGTTTATAAGGACTTCTGCAAATGTTTCCTATTGTAATgtcaataaatatgtaaataattgaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388824 lncRNA downstream 108766 7031364 ~ 7032724 (-) True G328215
TU388687 lncRNA downstream 400444 6648296 ~ 6741046 (-) False G328083
TU388686 lncRNA downstream 432723 6648296 ~ 6708767 (-) True G328083
TU388498 lncRNA downstream 810205 6256403 ~ 6331285 (-) False arhgap33
TU388102 lncRNA downstream 1056841 6083366 ~ 6084649 (-) True G327560
TU389090 lncRNA upstream 222313 7376887 ~ 7378436 (-) True G328439
TU389234 lncRNA upstream 293599 7448173 ~ 7448967 (-) True G328565
TU389231 lncRNA upstream 295823 7450397 ~ 7452117 (-) True G328562
TU389250 lncRNA upstream 354295 7508869 ~ 7509107 (-) True G328580
TU389258 lncRNA upstream 403821 7558395 ~ 7558649 (-) True G328588
XM_034298090.1 mRNA downstream 4371 7124011 ~ 7137119 (-) False LOC113532854
XM_034298089.1 mRNA downstream 4531 7124011 ~ 7136959 (-) True LOC113532854
XM_026924579.2 mRNA downstream 20521 7091541 ~ 7120969 (-) True tmem67
XM_026924093.2 mRNA downstream 54625 7075199 ~ 7086865 (-) True LOC113532636
XM_026923905.2 mRNA downstream 70128 7066998 ~ 7071362 (-) True glipr2l
XM_026924886.2 mRNA upstream 30503 7185077 ~ 7223848 (-) True invs
XM_034298223.1 mRNA upstream 93814 7248388 ~ 7268807 (-) False stx17
XM_034298221.1 mRNA upstream 93814 7248388 ~ 7268766 (-) False stx17
XM_026924777.2 mRNA upstream 93814 7248388 ~ 7268762 (-) False stx17
XM_034298222.1 mRNA upstream 93814 7248388 ~ 7268745 (-) False stx17
TU388974 other downstream 79062 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 711558 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003403372.2 other downstream 1163111 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other downstream 1163222 5876096 ~ 5978268 (-) False zfpm2a
TU387192 other downstream 2163963 4963617 ~ 4977527 (-) False ubr5
TU389089 other upstream 224206 7378780 ~ 7386306 (-) False sec61b
XR_003404173.1 other upstream 3130260 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 3368158 10522732 ~ 10523263 (-) True G330185
XR_003404157.2 other upstream 3768552 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 3927694 11082268 ~ 11083151 (-) True G330379