RNA id: XM_026924312.2


Basic Information

Item Value
RNA id XM_026924312.2
length 2414
RNA type mRNA
GC content 0.48
exon number 9
gene id dpys
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 6066133 ~ 6084254 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctCCGCCTTTCAGGACTTAGGTCAGGTTTCGCAACTGTAAACACTTGTGCAGATCGGCAAATCATAGGGGGAAAAAGACACTCTGAATTCTTTATATTTGGATTTACAACCcgaaaaattatttaattatagcaTAATAAGCATGTCGGAGAGGGGCCGGATTTTGATTAAAGGAGGTAAGGTAGTGAATGAGGAGTGCTCCGAGCTGGCTGATGTGTTTATAGAGGACGGGGTGATCCAGGCAGTGGGCTCCGAGCTGCAGGTGCCGGAGAGCGGAACTCGGGTGCTGGACGCCAGCGGGAAACTGTTGCTGCCCGGAGGAatagacacgcacacacacatggagctGGAGTTCATGGGCACTGTGGCGGTGGATGATTTCCGCTCGGGTACCAAGGCCGCAGTAGCCGGAGGAACCACCATGATCCTGGATTTTGTCATCACTCGAAAAGGAACCTCTCTGCTTGAGGCGTACGACAGATGGAGGAAGATTGCTGACGCAAAAGTGTGCTGTGACTATTCCCTCCACGTCGCTGTTACCTGGTGGGATGATAGTGTAAAACGAGAGATGGAGACCCTTGTTCGAGAGAGAGGAGTAAACTCCTTCAAGATGTTTATGGCGTATAAAGATGTGTTCATGCTGAGCGACCAGGAGCTCTACGCCGCTTTCTCTCACTGTAAAGACATTGGAGCCATCGCACAAGTCCACGCTGAGAACGGAGATCTGATTGCAGAGGAGGCCAAGAGAATGCTGTCTTTGGGAATCACAGGACCCGAGGGCCATGAGCTCTGTCGCCCTGAGGAGGTGGAATCAGAGGCCACTCAGCGTGCCATCACCATCGCTCACACTGTCAACTGCCCTCTGTATGTGGTGCATGTCATGAGCAAATCAGCTGCTAAAGTGGTGGCTACTGCTCGCAGAAACGGGCGAGTGGTGTTTGGCGAGCCCATAGCTGCTGGCCTGGGTACTGATGGCACTCATTACTGGCACAAGGACTGGGCACATGCGGCAAGATTCGTTATGGGACCCCCGCTAAGGCCGGACCCCAGCACACCTGGCTACCTCATGAACCTGCTCGCTAAtgaTGATCTGAGTGTAACCGGGACTGATCACTGCACCTTCTCCATGTGCCAAAAAGCCCTGGGCAAAGACGACTTCACTAAAATCCCCAACGGCGTTAACGGCGTGGAGGATCGCATGTCTGTCATCTGGGAGAAAGGAGTGCATAGTGGCAAAATGGATGAAAATCGATTTGTGGCGGTCACCAGTAGCAACGCAGCCAAAATCTTCAACCTTTATCCACAGAAAGGGAGGATTGCCAAAGGCTCTGATGCAGACCTGGTTATTTGGGACCCAAAAGCTACCAGGGTGATTTCAGCGAAGAACCACCACCAGGCGGTGGATTATAACATCTTCGAGGGGATGGAGTGCCACGGTGTTCCTCTGGTGACCATCTCCGGAGGCAGAGTGGTGTATGAAAATGGCCGTGTGTTGGCTGAGCCTGGGACAGGAAGGTTTATTCATCGAAAGCCCTACTCTGACTTTGTGTACAAGAGAATAAGACAAAGGGACGAGGTTGGGAAACCCAGTGCAGTGGCCAGGACACCCTATAAAGGAGAAGTCATATCTAAGGCAAACAGAGCTTGAAGGAAAACACTGCAGAAAACCTGCAGTGTTACCAAGTAACCTTGATCTCTTTTAGGATTTTAAAGGCGATAtaaagtactgtgcaaaagttgtAGATAAACGGTGATTGTGAAGCCTCCTTTAGAATTAcagatgctgtttttttttcagattgtgTATCAGGGTTGTCATGGAACAAATTTATTTAGCTGTTTATATTGCTTCagtgtgctgctagcaatgaactcctcTAAGATGGTATAATGACCAATGCTCTGCACGCTCTGGTCGACTCTATCAGTTCAAGCACCATAAGACGGCacttatcatatcatatcactTGTATATTCTGTTATCGGTACAAGTACGAGGAATTGAACATGGTGTTAAGATGGATACACACTATCAGGATCAGTATCGATACAGCAATGTTTAGAATGCACGACTGAAGCTGTGTACGTCATTTTCCCAAAGATATAGTGTGAGGAATCAAATCCTTTTTATATTTGTCTGCCTTCATCAGTCTATTTTCAGCAGATCCCTTACAGCActggctgaaacacacacacacacaagcacacacacaaacactatgaATCACCTCCATGATTCACAGAAACCTACAGACACGCATCACAGTGTTTACCAGCTCCTGAACAAAACATCTCAAAAATTGGACTCATCACTTATTAAGACTTTCTGCCACAGAGTGTTTCAGCGTGATTTATAGTCTCATACTTTGtctatatgtaaaaaaaaaaaaagtggttgcTTTGCTGCAACACAT

Function

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K01464 DPYS, dht, hydA; dihydropyrimidinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU387927 lncRNA upstream 223695 5842219 ~ 5842438 (+) True G327391
TU387921 lncRNA upstream 232871 5832993 ~ 5833262 (+) True G327385
TU387696 lncRNA upstream 459034 5605870 ~ 5607099 (+) True G327178
TU387573 lncRNA upstream 524244 5541358 ~ 5541889 (+) True G327071
TU387473 lncRNA upstream 751544 5311231 ~ 5314589 (+) False acbd7
TU388624 lncRNA downstream 564026 6648280 ~ 6708779 (+) True G328024
TU388766 lncRNA downstream 865305 6949559 ~ 6961376 (+) True G328161
TU388815 lncRNA downstream 938901 7023155 ~ 7029401 (+) True G328208
TU388835 lncRNA downstream 960792 7045046 ~ 7045278 (+) True G328222
TU388878 lncRNA downstream 1043912 7128166 ~ 7136722 (+) True G328260
XM_034298144.1 mRNA upstream 160716 5796162 ~ 5905417 (+) False si:dkey-122a22.2
XM_034298142.1 mRNA upstream 199609 5796162 ~ 5866524 (+) False si:dkey-122a22.2
XM_026924620.2 mRNA upstream 227803 5796162 ~ 5838330 (+) True si:dkey-122a22.2
XM_034298143.1 mRNA upstream 236073 5796162 ~ 5830060 (+) False si:dkey-122a22.2
XM_026924619.2 mRNA upstream 236807 5796162 ~ 5829326 (+) False si:dkey-122a22.2
XM_034298203.1 mRNA downstream 220327 6304581 ~ 6312558 (+) True zgc:101716
XM_026924697.2 mRNA downstream 234833 6319087 ~ 6326360 (+) True upk1a
XM_026924097.2 mRNA downstream 570521 6654775 ~ 6759822 (+) True LOC113532640
XM_026924098.2 mRNA downstream 570521 6654775 ~ 6759822 (+) False LOC113532640
XM_034298057.1 mRNA downstream 945527 7029781 ~ 7043670 (+) True tbrg4
TU387482 other upstream 727882 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 1135979 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 1142452 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 2052595 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 3496394 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 1817538 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 2303933 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 2530819 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 2684491 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 2684492 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile