RNA id: XM_026924323.2


Basic Information

Item Value
RNA id XM_026924323.2
length 5891
RNA type mRNA
GC content 0.54
exon number 23
gene id virma
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8072467 ~ 8095509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttgtttttctctggCGCACTCTGCAGTGACCTGGAAGTGAAATGTTTAGCAGGAAGTACAAATGACCGAGAAACAAAGATGGCGGGGGATTCCTCAATGGAGCTTCTGTTTTTAGACACGTTTAAGCATCAAAGTGCAGAGTTCACAAATGTGGATGTGGTGCGGTTTCCGTATGGTGTAATGATCACAGAAGTCAGAGTCATCCCTCCTGGTATCAAAGCCCACAGCAGCCTCCCGGACAGCAGAGCTTTTGGagaaACTGCTCCTCATGCTTTCCAGTTAGACCTGTTCTTTAACAATGTGTCCAAACCCAGCACCCCAGTGTTTGACCGGTTGGGCagCTTGGAGTACGACGAGAACAAATCAATTGTCTTCAGGCCCAGTGGAAAGATAAATACAGACGGGTTGGTGCTGCGGGGCTGGTATACATGCCTAACGTTGGCAGTGTATGGTACGGCCGAACGCTCACACAGCCACGACCGCGATTctccacccccaccccctccACCTCCACCGCAACAGCAGACACCTGCCTCCAAGAGGAATGTCAAGCATGagtgggATAATGAGGAGCAGTTTAACGGCAGCCCACCCAGACCACAACCCAGAGGCCCTCGAACCCCACCAGGGCCTCCACCCCCGGACGACGATGATGAGGATGCGCTGCCtgtgccagGCCCGGTGAAGGAGGAGAGCGTGGAGCGCGGAGACGATGATTTGGAGCCTGTTTCTCCTGAACGAAACTCCCTCCCTCCTGATGATGCATACTCAGACCAGCAACAGGAGGAAGATGAAGGAGCAGGGGAGGATGAAGACGATGATGCCCGCTCTGAGGGAAGTGagccagaggaggaggaggaggaggatgaggaagaggGTGATGATGGCTATGAGCAGATTTCCAGTGACGAGGAGGATCTCGAGAGTGGGGCATTTAAACTGCCAGCCTTCGACCTTGACTGCACCCCTGAGGACCTCGCATCACTCCCTACCGTCCAATACGATCCGTACGAACGGGAACTCCGCCCCCTCCAGCACTTCACTGCACCCCATATCACGCGCTACGAGGCAGAATTGAATTGTCTTAAGGCTACAGAACTTCAGGACCAAACGTCGCCATGGGCCGAGTCTGCATCTAAGTTGGTAGAACTGTTGGAGTCCCGGGGGGAGGGGCCAGACTCAGAGCACAGTGCAGGCTGGGTAACGGCATTAGAAGAAGTTTCTGGTTTGCTAGTGAAAGGATTGAGCTTCTTGGCGGTTAAGGATCCAGAGGGCCAGAAGGAGCAGCTGAAGCTGCTGGTCGAATGGACATCCACAGCTTTGAATCTCGACTCAGCCCTGGCACAACCCATCGCCCTGAACCTGCGCCAACTGAAAGCAGGTGCCAAACTAGCGTCTTCTCTGGCTGACTGTGGTACTCAGACTGTGCAGGGTCTGCTGGAGAAGGGAATCGTGGGTCTTCTGCTGGGCCTCCTGTTTGCCGATCACGTGTCATCCACGCTGAAGCTCAGCGTTCTGCGCTCCCTCGACAGCATCATAAGCGAACCAATTGGCATGGAGGCACTGATTAGAGTGGACCAACAAGACAGCGAAGGGACCAGTGGCTACCAGCGTCTGCTCGAGCTCTTTCTTTTGGACCAGACTGTCCGAGTGGCGACAGCAGGTGCTGCCATCATGCAGAAGGGACATTTTTACGAAGTGCTGACTGACCTTCAGAAAACAGCGGGTGTGTGGGCTGAGCACCATCCTGCAGAAGGTGaggctggagagagagaaagagaaggaggtgagagggagagagaaagcactgacagagagggagaagagggaGACAGGGAAAACATCGAGGCAGAGCCCGAGAGCCCGATGGACATGGACACGCTGCTGGAATCCAATTCTCTGTCAGAGGCTGATCTGGAGAGGCTGCAAGGTTTGCTAGAAGAGTTGCTCCACCTGCTGGAAACAGCGCCTCACTGCATGGTGCAGCCGCCTGGCAAGGCTTTTCCCACTACTGCACGTATTACCGGACCTCCGGAGCGAGATGATCCTTATCCAACACTCTATAGGTATATGCATGCTACCCACTTCTTGGAGTCGCTGGCGGTTGTCTTGACCTCTCCGGCCACTTGCAGCCACGTGGGGGTACTGCAGGCCGTGCGAGAGCTGCTGCGCTTCTTATCCCAATCCCAGCAGGGCCTCTTATTCCTCCTGAGCCAGCACGAGCCCACCAACATCCTGTTACGTCTGctcacacctctcacacacgtGGCTCCCCTCACACACCTAGCTCACCTGGCCCCACTGACCCCTCTGTTGGAGGCAGAGGGCGAGGAAGCTGCCACTGGCACTGAGAGCTCATTGGACGATGGCTTTTGGGTGTGGTTAATGCAGGCCTTGCACGCCCTGCAAGCTGTCGCAGAGCTCAACGGCCTGGAGCTTGAGGAAGGTGACAATCCAGAAGTGTTGTCCACGCTCCACAGCTTGTATCTGATTAGTTTTAACAGCACGGGACGAAACGCAGTCTCACACGTATTCAGCCTGGACCTTAATCTCAGCTGCCTGGTCAACCTGCTCGAGCATCACGCCAAAGAGGGACAGGGgGAGGGAAAAGCCAGAAAGTCTGTGACATACAACTATGCCTGTATGCTCGTGCTGCTGGTGGTCCAGACCTCTGCTGAGCTGAGAATGATGGAGCATTATGCTGCTCCATTACTCAGTATATGCAAAGCCGACGAGAACAACGCAAAACTTCAAGAGCTGAGTAAATGGCTGGAGCCACTGGAGAAGCTACGCTTTGATATGAGTGGCATACCAGCGCTTATTGATTACATCAAACAGAATCTGGAGAATGTAATGACGCCAGATGGAGTGGGGCTTGTCACTGCCCTCAGAGTGCTTTGTCACATTGCCTGTCCACCGGCTACAGTGCCagGTCAGCAGAAGGATCTGAAGTGGAACCAGGCAGTGATCACACTGTTCAGCGCTGAAGGAATGGACACCTTTATTAAAGTCCTCCAGAAGTTGACCTCGGTGTTACTACCCCCCTGGCGACTGCATGGACCCTTGGGCCCCACGCCACAGCggctgatgatgatgtcactggcGTCCTGCGCGCTGAGGCTGATGCGAGCAATGCTAAGCGAGCTGCTGCAAGGCGGCGCGTGTGAGTTCAGGGACGTGCGTGTCCCGGCCGTGTGTGTTACCCTACACACGATTGCATGCTCCACGCCGTTGGGACGCCTGGATGCCGAGGAGCTGCGCCTGCAGAGTGACATCACTGACGTTTTACTGACTTTCACACACGCTGTGAGCGAGCAGGAGACAGGATCTGAGGAAACTGTGGCAGCGAACAGCTGGTCTCTCATGCTGAAAGAGGTGCTCAACTCCATTACGGCTGCACCACAGAACATTTACAGCAGCCTCAGTCTGTTATCGGAGCTGCTGCCTTTACCGCTGCCCATGCAGACCACACagGCTTTGTCAGTCCAAGACATTGGCGTGGCGATGAACACACGTAAGCTGTGGAGCATGCATCTGCACGCTCAGGCACGCACGTTACAGGAGCTGctgcgttgtgtgtgtgtgagcagctgCCCACCTCTCCAGTCTGTGCtccggcgagtgtgtgtgcagctctGCGACCTTGCAGCACCAACTGCCACCCTTGTCGTGAGGACCCTGCTGGAGCAGCTGCATGAAGAGATGCAACTGGAAGCCGTGACTTCGCAGTTGACAAGGCTACTAGCCCTAATAGACTCACTGGTGTCTCAGCGCTCCTGTAAGGCAGCCATGTTGGCTCTGCTGGGCGGAGCCGTGCGCAGCGAGGTGCGGACCGAGGGGCGGCCTGAAGACAAATCCTCAGAGATGCTATCGATGCTGCTTGCGATGCTCCTCCCACCGGTGGACGCCAGCCTATCGGTGCAACAGAACTCTGAACTGATAGCCTCAATTATCCAATCACTGTGTGACCAGGACATTTCACTGATTGTGAGTGGCTCaggggaggtgtgtgtgtctgaggcaGAGCAGTTGGCTAACGCCTTGCCTTCAAAGGAAATGATGCCGGGTATATGTGACAGAATGTTGGAGGTGCTCAGACACACCCACAGCAGCTACACTCTTCAGCTCACTTGCCTCAGAACAATGATGTTCCTGACCGAACATGACTATGGGCTCTATCACTTGAAGAGctcACTAAAGAAGCACAATTCTGCCGTGTCATCACTGCTCCGGAGAGAAATCGCGTCTTTTAACAAAGAATCGGCTGAACTGCTTTCTGCTCTGTTGGACTTCCTGCGGCAGATCCTCAACAATGACTCAGTGGATGAAGATATGGACTCCCGCTCTTTGGCTTTGAACATGAGTGATATGAAACAGCTGCTCCAGTGGAAAGATGATTCCACTGAACATCCGCTTGCAGAGTTGGAGAAACACATCACGGAACTTCTTAAAGAGGATGATTCTTTGGAAGCTCTGCTGGAGAATGTGGTGGGTCTCCGGCAGATTGTGGAAAGTACTGGAGAGACAATGGGCCAAGCAGAACCTGAAACAGAGCCAACTCTGCCTTCTCCAGAGCCACTCCAGACCCAGTTTAACAACAGAACCGTATATATTCTCTCTGATCTGTTGGATGATCAGCTGAGAGCTCTTTGGTATTCTCCATTCCAGTCAGACGACATGGAGACAGACCAAGacatgGTTAAAGTGGACCTGGTCGCGCTGGCGCAGCAGTGCTGCCCTGACCTGAACCTGAAGGCAGAGTTAGACCGTTCATTCCTGAGCGAGCCTACTTCACCAGGCCACAGCAAACCAGCAAAGGGCTTTAGACTGGGAAAGCACAAACATGAAACCTTCATCACCTCTAgCGGCAAATCAGAGTATGTGGAGCCGGCTAAGCGTGCTCACATCATGGTAGCGCCTCGCGGACGTGGTCGCGGTGCTTTCAACCAGCTCAGCCGCCCGCACGACATCTTCAGGCAGCGTAAGCAGAACACGAGCCGGCCGCCCTCCATGCACGTAGATGACTTCTTGGCTGCAGAGTTCAAGGAAGTGAACCTACCTGCAGGCTTGGCTCCACCCAAACGCCCTCTCAAAGGGGGAGGGGCCAAGCCACCCACTAGAGGCCTGTTTACTGGTGGAACCAGGGGACGGGGCTTCCAGAGCCACACCCGCTTCTTCACTCCACCTGCACCCAAGAGCGCACTGCTTGCCAGTAATTATCCTCGTCGTGAAGGTGGGCGGGGCTCGACGTGGAGTGCTCCAGTGACTGCAGTCACTCACAGAGGGACATACAGTGAACCCCGAGGAGCACAAAGTAACTTTACACGGCCTTTGCCATCGAGGCAGCCACCAACAGGTGCACACCGGTTGGCTCCGCGAGACCGTGCCCCCAGAGGAAGAGGCACTGGGCTTTCCTGGCTAAGCGGAGGAGGACTTAGTGTAGGAGGTGGTGGAGTAAGTAACAGTGGGCGTGGTCAAGGCAAATTCAGCAGCAGCGGGAGTGGAGGTGGACGAGGCCGGCACGTACGCTCGTTCACTCGCTAATAACGATAAACTATCCAGGACTCAGCCACAGGGCTCTAAAGGACCAATCAGGACGTGGACTTGGAGAATCAGTGGATGCatttattgtaatgttatatctgttgttttttttttctgtcaaaagCTGATTAAAATTCTGTGAATATCCACTTGTGTTTAATATCTTTTAAACCTGACATTTGAATTTCAGCAGTTTAAAAGCGTACATTTTTATATGCAGCTGTTTGCTAGGAAGTGCCGTTTTCCAAGAAAGACATTGTGATAGATACTTTGCAAAGTATTTTATTGTGAGCCAGTTAGAGAAAATAGTTGCAcaattaatgtgaaataaatcattttgaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389297 lncRNA upstream 413388 7657141 ~ 7659079 (+) True G328620
TU389095 lncRNA upstream 680019 7392241 ~ 7392448 (+) True G328441
TU389077 lncRNA upstream 698967 7373280 ~ 7373500 (+) True G328427
TU388944 lncRNA upstream 803705 7267734 ~ 7268762 (+) False G328313
TU389473 lncRNA downstream 9753 8105262 ~ 8105462 (+) True G328750
TU389477 lncRNA downstream 39571 8135080 ~ 8135455 (+) True G328754
TU389478 lncRNA downstream 40008 8135517 ~ 8136163 (+) True G328755
TU389722 lncRNA downstream 120937 8216446 ~ 8216654 (+) True G328944
TU389774 lncRNA downstream 162016 8257525 ~ 8264036 (+) True G328995
XM_026924476.2 mRNA upstream 27242 8009901 ~ 8045225 (+) True epb41l4b
XM_026924477.2 mRNA upstream 27242 8010540 ~ 8045225 (+) False epb41l4b
XM_026924475.2 mRNA upstream 62697 7971618 ~ 8009770 (+) True ptpn3
XM_026924148.2 mRNA upstream 148214 7905872 ~ 7924253 (+) False epb41b
XM_034298213.1 mRNA downstream 15904 8111413 ~ 8133575 (+) False rad54b
XM_026924866.2 mRNA downstream 15906 8111415 ~ 8133575 (+) True rad54b
XM_026924869.2 mRNA downstream 20041 8115550 ~ 8120900 (+) True LOC113533047
XM_026924274.2 mRNA downstream 44573 8140082 ~ 8156293 (+) True cdh17
XM_026923985.2 mRNA downstream 88583 8184092 ~ 8190259 (+) True LOC113532572
TU389428 other upstream 169859 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 2734216 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3142313 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 3148786 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 4058929 4011410 ~ 4013538 (+) False hamp
XR_004576973.1 other downstream 292678 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 519564 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 673236 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 673237 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 757819 8853328 ~ 8856276 (+) False bmp6

Expression Profile