RNA id: XM_026924341.2


Basic Information

Item Value
RNA id XM_026924341.2
length 3887
RNA type mRNA
GC content 0.52
exon number 13
gene id brd2b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3279997 ~ 3295032 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTTGGACTCTAGCGgtgaatgacaataaaactgaGCTCGCACACAAAAAAACCGAAACCgctcaaataaaataaaataaaaaaaacccggTTCATCCTCATGGAGGCGGCGGTCAACCCGTCTATTGACAGCAGGTCTGTCATGACGGGTGCCATGGAGTCAAGCGCAGCCAACCCGGGCAAACGCATTCGCAAACCCTCTCTACTCTACGAGGGCTTTGAGGGCCCCGGCCTGCCTCTCACACCCACGCCTGTAGCGGGGCCGCCTCCCTCGCAGCACCTCCCAGTGAAGGACCCGAGCCGGCAGGGCCGCGTCACCAACCAGCTGCAGTACCTCCAGAAGGTGATGACGAAGGCGCTGTGGCGTCACCACTTCGCCTGGCCTTTTCACGAGCCCGTGGACGCCGTTCGTCTCAACCTGCCTGACTACCACAAGATCATCAAGCAGCCCATGGACATGGGCACCATCAAGAAACGGCTGGAGAACAACTACTACCGCAGCGCCAGCGAGTGCATCCAGGACTTCAACACCATGTTCACCAACTGCTACATCTACAACAAGCCCACTGATGACATCGTGCTGATGGCCCAGTCTCTGGAGAAGGTCTTTCTGCAGAAGGTGGCTCAGATGCCCCAGGAGGAGATCGAGTTGCCCCCTCCTGCACCCAGGGGTCGAGCAATCAAGACTGCCAAATCCCGGCGGGGAAGAGgtggtcTGAGTGCAGCTCAGCAGGTCCCGGCTGTGTCCCAATCTGCCTACTCGCCCTCTTCTCCTGACACCCCTGATTCCAGGTTTTCCGGCTCTCCTCACATGATGCTGAGTAAACCTggacctcctcctccttcctcctcctcctccccacTCATGACTCTGCCCCCCACACAGCCCACCGCTAAGAAGAAAGGCGTGAAGCGTAAAGCGGACACCACCACCCCGAGCACCACAGGCTTCCCTGTGCCTCCTGCAGGCCGTGCTATGGGTATGGGTAAGGGCCGTggcgctctctcgctctcgccgGTACCCAGCCTGACGTGTGGCATGGGCGTGAGCGAGCCCGTGCACCTGCAGCCCGTCATGGGCCGATCCGTGCCCCGGCGTCCCATCAAACCCCCGCGCAAAGACCTGCCCGAGCTGGCGAGGCCAAAGAGTGCACCGCGGCACCGTACCAAGCTGAGCGGCCAACTGCGCTACTGCAGCTCCATCCTGAAAGAGCTGCTGAGTAAGAAGCACGCGGCCTACGCCTGGCCCTTCTACAAACCCGTCGACGCATCACTGCTTGGCCTGCACGACTATCATCTCATCATCAAACACCCCATGGACCTCAGCACCATCAAGAGGAAGATGGACGAGCGGGAGTACAGGGACGCTCAGGAGTTTAGTGCTGATGTGAGGCTCATGTTCTCCAACTGCTATAAGTACAATCCACCTGAGCACGACGTGGTGGCCATGGCACGCAgactgcagGACGTGTTTGAGTTCCGTTTCGCAAAGATGCCTGATGAGGTcctggaggaagaggaggaggaagaaggcTTAGCGCCGACCTCTCTGGGTCGTAACGTGGGCATTATGGGATTGCagcactcctcctcctcctcgtcgtcctcttcatcttcatcgtCCTCATCGTCTCCCTCCTCTTCATCGGAAAGCGAGCCGAGTAGCGACAGTGAGCCGAGCAGCGAGAGCAGCCCAAGCTCGGACAGCGAGGAAGAGAGAGCGCAGCGCCTGGCCCAGCTGCAGGACCAAGTGTGcactcagCTGCGGGCGGTGCACGAGCAGTTAGCCGCGCTCTCGTCCGGCCCCATCATCAAACCCAAGAAGAAGcgggagaagaagaaggacaagaagaagaagaagaagccggAGAAGCGCAAAGGTGGCCGGAGCaacgagagggagagagagaaggtaaCCAAAGTGACCAAGAGCAAATCCAGCAAGATGGCGCCCGTGTCCACTCAGAGCAAGAAAGCTCCTGCCAAGAAGAACAGCAAGAGCAACAAGACAACTAAGAAGTCTTTGGCAGCTGCGGCACGTTTTTCATCTTCTGCCCCGCCGATTCCGCAATACGActcagaggaggaagaggacggTCTGCCTATGAGCTACGACGCCAAGCGCCAGCTCAGCCTCGACATCAACAAGCTGCCGGGAGACAAGCTGGGCCGCGTCGTGCACATCATCCAGTCCCGCGAGCCCTCGCTGCGCGACACCAACCCCGAGGAGATCGAGATCGACTTTGAGACGCTCAAACCGTCTACGCTGCGTGAGCTCGAGAGCTACGTCACCAGCTGCCTGCGCAAAAAGCCACGGAAACCTTACGtgatgaaGCCGGCCGGTGGGAAGTCTCGTGAGGAGCTGGCTTTGGAGAAGAGAAGGGAGCTGGAGAGAAGGCTGCAGGATGTTAGTGGCCAACTCAACTCTGTCAAAAAGCCCCAGAAACCCAAAGTGGAGAAGGCCAGCGTGAGCACAGAGCCACACTCCATGCCCGCTCGCCTCAGCGCCAGCAGCTCCAGCTCCgactcctcttcatcctcctccgaTTCCTCTTCCTCCGACACCAGTGACTCTGACTCCAGGTGATCGTGCGGGTTATGAGAGCACCGTGACATGACAAAGGCATGTCCTGAAATCCCGGCAGGATGAATTCTGGGAGGACCGAGGCTGTGTGGGTGATCCAGAAATCCAGAGATGGAAGGACAgaaggagaaaggaaaaaaaaaaataaaaaaaaaaagagccaaactGTATCATCCCTAGGACACACTTTCATGTGCAACGACAGATTCCCAAAAGCGTGTTGAGACGTGTTTGTTAACCATGTACAGACTGTGTTGGattaatttttctttcataaaGAAGACTTTTATAAACGTGCCCATAGTGGGAGGTCATGTGGACATAGAAACTGCGCTGGAGTCTTGTCAGTCATACGAATTTCTTTCATTCGTTGTGGATTTAGAGCTCGGTTTAAAATTCTGTTTCTCCAAACCACAACATTTGACGCCTaccttaatcttaatcttaagtCTGCCTTAATTTGAAGCAAGAAAAGCAATGTAACTCTTATTTCATATAGAATATTAGAGTGGATGTTTCGTCGTGCTTTAAAATTCAATCAGGAAGCAAAATTTTGACAAAATGTCCGAAGATGAAAGAGAATTCGTGTTGAGCGTGCTGTTCGAGTTCCTTTTTGCGTGTAATGATTAGCCAAAGGGAGGAATATCCATCATAAAACTTGTATAACTTGTACTCAAGGTTATTCAGTGCGATTATTCCAGTGACcagtaatgtgtttaaaaaaattaactagTTAAAGGTGTAGTTGTGATTTTTAGGTCGAAGTTAGCCGTCTTAAAACTCAAAATTCGAACAAATTTAGGCGTGGCTTTGGAGGGAACGCTGAAGGCTTTATTagtttgagttttgagaactaGCTTCGGATTCCTTGCGCAAAAATCGGTGGTCCACATCTTTCTCACATTTTCAAGGACATGATGAGAATGTGTTTTGGACTTTAATCACTGACTGCATCTTTAATGTtcacttttctttgtttgttcattttaatgtttttacatCATCAAATACAGGTTTTGAACGTCTCAAACTGAAGTTTGTTATATTTGTCCCGTTATCTTAGCTGGACTTGCTAACGAGGCCGATACCGAGTGCACGCTAATAATTATCCCAGGTTAGCCTGACCTCAGTTCTGCAGTGCTAACTGTTTTCCTTCTAGCGTTCAGTCATTGCTAGCATTTATTGTGCTGCTTAAAGTCACAGATTCAAAACCCAGATcctgttttgaaaatgtgatgCCTGAAGTTTGAGCTTTCTTTCATTTGTCAGGTTTGAAATGGTGATTTTGTAGGGGGCAAAAAA

Function

GO: NA

KEGG:

id description
K08871 BRD2; bromodomain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386041 lncRNA upstream 19816 3258929 ~ 3260181 (+) True G325754
TU386009 lncRNA upstream 71035 3139312 ~ 3208962 (+) True G325730
TU385973 lncRNA upstream 207924 3071849 ~ 3072073 (+) True G325697
TU385717 lncRNA upstream 632414 2644041 ~ 2647583 (+) True G325462
TU385672 lncRNA upstream 710258 2567979 ~ 2569739 (+) True G325435
TU386119 lncRNA downstream 24885 3319917 ~ 3322330 (+) True G325815
TU386344 lncRNA downstream 406302 3701334 ~ 3702153 (+) True G326023
TU386457 lncRNA downstream 585645 3880677 ~ 3880941 (+) True G326131
TU386508 lncRNA downstream 650350 3945382 ~ 3946133 (+) True G326178
TU386524 lncRNA downstream 672500 3967532 ~ 3973002 (+) True G326193
XM_026924709.2 mRNA upstream 1550 3265283 ~ 3278447 (+) False tap1
XM_026924710.2 mRNA upstream 1550 3265283 ~ 3278447 (+) False tap1
XM_026924708.2 mRNA upstream 1550 3265671 ~ 3278447 (+) True tap1
XM_026924711.2 mRNA upstream 1550 3265671 ~ 3278447 (+) False tap1
XM_034298260.1 mRNA upstream 1550 3265671 ~ 3278447 (+) False tap1
XM_026924045.2 mRNA downstream 6523 3301555 ~ 3304044 (+) True LOC113532608
XM_026924044.2 mRNA downstream 10074 3305106 ~ 3310818 (+) True LOC113532606
XM_026924434.2 mRNA downstream 70089 3365121 ~ 3422994 (+) True LOC113532798
XM_026924435.2 mRNA downstream 120241 3415273 ~ 3422994 (+) False LOC113532798
XM_026924436.2 mRNA downstream 120359 3415391 ~ 3422994 (+) False LOC113532798
TU385671 other upstream 710258 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 1065698 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 1065736 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 1135486 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 2116383 1118268 ~ 1163614 (+) True G324258
TU386582 other downstream 716378 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 1625948 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 1629754 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 2037236 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 4606760 7901792 ~ 7902608 (+) False LOC113532663

Expression Profile