RNA id: XM_026924349.2


Basic Information

Item Value
RNA id XM_026924349.2
length 7053
RNA type mRNA
GC content 0.50
exon number 26
gene id ptpn23a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1296876 ~ 1310714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagCCCAAACAGCCTACACCTTTACGTCATGTCCGAAACATCAGCAGTTTCCTGGGACATGACACAGTCGTTTAGCTTAGAAAACACAGATTAATACAAGCAGATTACGCGTTATAGTAGAGCCAGACCGCGTTTAAATCGTTTTTTGCACTTCGGGGTCGCCGGCTGAGTGAATTTAGCTGGCTGAAAATGGAGGCGGTGCCGCGAATGCCGATGATTTGGCTGGATTTGAAGGAGGCTGGAGAGTTTCAGTTTAGCTCGACTGTTAAACAGTTCATACTGAAGAATTACGGCGAGGATCCAGACAACTACAACGAGCCGCTGAAGAAGCTGGAACAGTTACGacagAGTGCGGTGAACGTGACGCGGGACTTCGAGGGCTGCAGTACACTACGGAAATACTTCGGGCAGCTGCACTACCTGCAGAGCCGCGTGCCGCTGGGTCCCGGGCAGGAAGCCGCTGTCCCGGTGTCCTGGACGGAGATCTTCTCGGGGAAGACAGTCACGCACGACGACATTAGCTACGAGCAAGCATGCATCTTGTATAATTTAGGAGCGCTGCATTCGATGCTGGGAGCGATGGATAACCGCGTCTCAGAGGAGGGGATGAAGGTCTCGTGCACACATTTCCAGTGCTCAGCTGGAGCCTTCACCTACCTGCGAGATCACTTCAGCCATAACTACAGCGTGGACATGAGTCACCAGATCCTTAACCTCAACATCAATCTCATGCtgGGTCAGGCGCAGGAGTGTTTGCTGGAGAAGTCCATGCTGGACAACAGAAAGAGTTTCCTTGTTGCGCGGATAAGTGCTCAGGTAGTGGACTATTATAAAGAGGCTTGCCGTGCCCTGGAGAACTCCGACACGGCCTCAATGCTCGGAAAAATCCAGAAAGACTGGAAGAAACTTGTGCAGATGAAGATTTACTATTTCGCTGCTATTGCTCATCTGCATATGGGAAAGCAGGCTGAGGAGCAGCAGAAATATGGTGAAAGGCTTGCTTATCTTCAGAGTTCACTAGACAAACTGAACGAAGCGATAAAATTGGCTAAAGGCCAGCCGGACAGCGTTCAAGAAGCCTTGCGCTTCACCATGGACGTCATCGGGGGGAAatttaaCTCTGCAAAGAAAGACAATGACTTCATTTACCACGAAGCTGTGCCATCTCTGGAGACACTGCCTTCAGTTAAAGGTGCGCCGCTAGTCAAAGCCTTGCCTGTGAATCCAACAGACCCCAGTGTGACAGGACCAGATATTTTCTCCAAGCTGGTACCTATGGCTGCTCACGAGGCATCCTCTCTCTACAGTGAAGAAAAGGCCAAGCTGCTACGAGACATCATGGCAAAAATAGAGAGCAAGAACGAGACTTTAGAACAATTCATGGACTCTCTGAATCTGGACCCAGACTCTGTGGACAACATGGACATGTACAACAGCATTCCCTCTGTACTCATGGAGAAGTGTGCGGCTCTGAGCGTGAGACCGGACACAGTAAAGAGTCTCATACAGTCCATGCAGGTATTATCGGGCGTGTTCACGGATGTGGAGGCCTCCCTGAGGGAGATTCGGTCAGTCTTAGACGACGATGAAGCAGGTGACCGGAAGCTGGAGGAGGTAGCAGGGAAGCAGAGTGTCCCAGCACAACCTGCCGCCATAGCTGAGCTCCGTAGGGACCTCGAGAAATACCTGGAGGCCCACGAGAAAGCAAGCTTCACCAACACAGAGCTTCACCGGGCCATGAATCTGCACATTAGCAACCTGCGACTGCTGGGTGGACCACTGGACACTCTGAGAGAGGCCCTGCCCAGACCACAGCTTTCTGAAGATGAAGTAGCAGGCCTCCAGTGCATGAAAAGGATTCTGGGTAAAGTACAGGAGATGAAAGACCAACGCAGTTCTCTTGAGAAGCAGCTGAGGGAACTGATCCAGCAGGATGACATCACTGCTGCTTTAGTTACCACTGAGAGAGCTGATATGAAGAGGTTATTTGAGGAGCAGCTGAAGAAGTACGAACAGGTAAAGGTGTATATCGATCAAAATCTTGCTGCTCAAGAGAACATCCTTAAGGCACTGACAGATGCAAATGTCCAGTATGCAACAGTACGCAAGAGCCTGGCCGAGACGGAACATAAATGGAACAGTACAGTGCAAATGCTTGTTGCTTCCTATGAAGCCTATGAAGACCTGATGAAGAAATCTCAGGAGGGAAAAGAGTTTTATGAAGACTTGGACGCTAAGGCTTCTCGCCTCTTAGAAAGGGCTAAGACCATCTGCAAGACCAGGGATGAAGAGAGACAAGCCATTTTGGAAAAAGAGCTCCAAAAGAAGGTTCCTCAAAGAcccacagccccaaagccagCCCAAAAGAAAGCCCCAGATATGGATTCCTCTGGCATAGAGGACCCTGAAATAGCCAAGTTGAATGCTGCCATTTTAGCCTTAGGTGGAGACTTACCAGAAGATCTTCGTAGTTTGCCTCCTGAGCTTGCCCTTCCCATGATACCAGAGGGTTTTCATCCAGGGGCAGCTGCTCTTTATTTACCACCCCGATTTCCTCCGAACCTACCACCTCCTGAACTTCTTGCGCAAATCTCCCGTTTTACAACACTTCCCCCCACCCAGCGCTTCAACCACAATCTGCCACCAGGCCCCCTGCCCCAGCAACATCAGGTTCCTCAGATGCCCAACCCTCAAGTCGCTCGGCTTCCTTCGCTGCCTGGGTATCGTCCTCCATCTTTACAAACCCAGCCAGCTGTATTGGGCCCACCAGCTCCCATTCGCACATCCACCACCACTGTGGACAGTGTGCAAACGCCTATTCCCAGCTACACTCCAGCACCAGGACAGCCAGCTATGCCTGCACCAACCCCTGGACACCCTATGTCCACTCCTGCTGTATATAATCCTCCCCTTCCAGTGGCTAGTCAGCCTCAGTATTTGCAGCAGCCTGGTGTTCCTGTTAACCAGCCACCTCAGGGACTACAAGCTTCTCAACCACAGTCACAGCCCCGTCAACCATTTCCCCAAGTTCACAGTCAGGGCCAACCACAGCCATTTTTCCAGAAGATGCCAACTCAGCAGCAGATACCTGCACCTGTAACTGGGCCTCAGCTCCCACAACAAACTCAGCCCCACTACCTACACCACATGGCGCAACAGAGACCACATGGACCACCTAATCTTCAGCAACGGCCATTTAATATTCACACTACACCATCTGCACTGCCCCAGCCCCAGCAGGTGTACCCTCCTGTTTCATTTGTTCCTGGTTGCCAACCTGTGAATGCCATTGCTCCAAATCAGCTGCCCCATCATTCCATGCCACCACAGATGCCCCCAGCCTCCCAGCCAATGCCTCAAGTTTCTATGCCACATTTACCAAATGTAAAACAACAAATGCCCCCTTGTTCCCAGCCCTATATGCCCACAGTCAGTCAGCAAGTACATCCTATTCCCCCTCCACAAACGCCCCTTTCCTCACAGCAGGTACCACCCGCAAGCCATGGGCAAATGCCTCCCACTGTACAACAGATACCTCCACATTCTCAGCCACAAATGCCACCATCTTCCTCCCAAATGTCTCCACCCACTCACCTGCAAATGCCTGCAGCTTCCCAACCAGTCTTGCATCCCTCTTGTCCACCAGTATCTGCTGTCTCCCAGTCTTTACCCCACCCATCTCGTCCACCAGTGCCCAGTGTTTCACAACCATTACCACACCCCTCCCATCAACAAATTCATCCTCCCTACCAGCCAGCATTTCCAGCAACCACACCAAGGGTTCCAGTCCCTGTCCAGCCTCAGTTACCTCCAGCCTCTCTGTCAGCACAGTTCCCAGTGCACACCAATGCTCTCCCTTCACAGCCCCATGGCAGTCTTTCCTCACAACTCCCTCCTGGACCTCGTCCTTCAGTGCCCCCACAGATGACCCAGCAACCTATGACCTTGCCTCAGCACCATCTCCCTCCTCACTCTACACCTGTGGGTTATCCTGGTGGTATTCCTATAGTTCCCCACCAGTCCACAGTTCCTCAGCAGCCCCAGGCTCTGCCTCAACAGGTACCATCAGGGGCGCCAGCGTCTTACCCTGGGCCACATGCTGGGATCATTCCTCCTGGACCAATCCAGCATTCCGGACCAGTAGTTACACCTGGACTCCAGCCACTCCCTCAGGGTATGATCCCACCATCTTCAGCTGCACCTGGTGCTACACCAAGTAGTGTCCTGTCTGCCCCATCTCCTTCTCCATCACCAGGGCCTTCCTCACTAAGTATCGTGCCTCAGAGGCCCTCTCCTGCTCTCACACCAGTTGCAGGTGCAGCGATACCACCGACTGCAACAACACCCCTGCCCTCATCTCCCCTGCCATCGTCCAACTCACTGTTTCAGCACCAGAATTCCAGTACAGATGATCTTCTCTCTTCAAGCCCTGAGAGCCAACATGGTGGTAGCAAAGACACTGCCAATGTCTTATTACCCACCAAGGCCGATCCTCAAGATGAACAGCTTCGCAAGAAATCAGAGGGAGTGAAGATTATTCAAGGTGATCCATACCAGGCTCCAGAGAGGGTCTCACAGCTTTGTGCAGAACTCGAAAGGTTTCGGTCAACTGTCCAGTCTTTGGAGCGTCCGTCAGGAGAGGGAGGTTTATCAGAACTTGATGCTCGATGGAAGGAGCTGCAAGATCAGCAAGAGAAGGATTCTCGTCAGCTCTCTATCGCCATAGCCCGATGCTACACCATGAAAAACCGCCACCAGGATGTCATGCCTTACGACTGTAATCGAGTTGTTCTGCACTCTGGCAAAGATGACTATATCAATGCCAGCTTTATAGAGGATCTTTCACCATATTGTCCCCGTCTTATTGCAACACAGGCTCCCCTTACTGGAACTGCTGCTGATTTCTGGCTCATGGTCTACGAGCAGAAAGTGTCTCTAATTGTAATGCTGGTGTCTGAGCAAGAACTTGAAAAGCAAAAAGTCTTGCGCTACTTTCCATCTGAAAGAGGACAGCAGATTACTCAAGGCTCCATCACGCTCAGCCTGACTACCCAGAAAAACACCGCCACTCACATAGAGCGCATGATTGGACTGCAGTATCGAGATCAGAGTCTGAAGCGCACCGTCATCCACCTACAGTTCACTTCATGGCCTGAACTCGGCTTGCCAGAGAGTAAAAGTAACCTCATTCGATTCATTCAGGAAGTTCACGGACATTACCTTCTCCAGCGCCCTTTACACACACCTGTCGTGGTGCACTGCAGCTCTGGTGTTGGCCGAACCGGAGCCTTCTGCCTGTTGTATGCTGCACTACAAGAGCTGGAGGCTGGGAATGGTATACCTGACCTATCCCAGCTGGTTAGGAAGATGAGACAACAGAGGAAGAACATGCTACAGGAGAAGTTACACTTAAAATTCTGCTATGAGGCAGTCCTGAAACATGCAGAGCAGGTGCTTCAGCGTCGTGGCATCATTACCACCCCAAGCCAAAAGTCCACAAACAGCGCAGCAGTTAAGCAGTACTCACAGCCAGAGGCTCAGGATATCGTTCTTGGAGGTGATATGCCCATTAGCTCCATCCAGGCTACGGTTGCTAGGCTAAGCATCCGCCCACCCAGTGCTGAGTCTGACCAGGACCCAAATCAGGACCCAATGCTTTCTGTTGCTGCAGGACTAGAACCGGAGTTTTCACTAGTCCAAGACCTCCAGGCTACTTCTCCCACTGACACAGTTCCTGCCTCACTGAGTCCCCCAATTTCCTCCCCTGCTTCTCCAGGTAAGATGCAGTCCCCTTCACCTCCTAACCACCAGGGTAACGGGTTCAAGGGATCCACACCCATGCCAGTCTCCAACAACCATGCTGCACCTGAAGCAGCTCCCCCAGCACCGTCATCCCTGGACCTTTTGGCTTCGCTAACACCTGAAGCTTTTACACTCGACAGTGGTTGCCGTGGCAAACAGCGAATCAGCAAGCAAAGTTTCTTCCAGGCGCAGGATGGCCAGGGTCTGCAGGGTCCTCCGAATGGAGATGACCCACTCAGCACCCTGGATCCCCTCTGGACTCTCAACAAGTCCTGACTTCCTGGAATTCCTTCTGATGAGGCCACATCTTTTTATGCCTCAGTGTTCTGTATTACCAGATCACTCTACCATTTAGCATTTTCGCTGCTTATCAGCTAGCTAACAGCCTTTATTAGTTGAATCCGTTATTTTGGAGCAGGGAAATGCCCAGATACCTGAATCCTTGTCCATGGCCTGTAACTCTGGGACCACCTCACTGTGGGTCAGTCCCTGTGTATCTCTTTAAGTCTGCACTTTTCTGGTACTGCCCTCCTTAAAGCTGTTTCCCAGCATGCGCACCTCATCTGAAGATGAGCCGGGCATTCTAAATGGACATCTGCATCTCAACACCAAATATGTCTTTATTAACAATGGAGATAAAAGACATGGAAATCAAAAGGTGAACTCAGTGAGCACTTTAATTTGAGAGAAGGGAACAACAGATTTGTCGGAGTGGTGGTTTGCTTAAATcttaaactggaaaaaaactGGATTTGAAAGAGGAACCCCAGTTCACTTTGTAATTCTGAGCAGTTTAAGTCTTCAAAGTGTGTTGACAAACGGTTACCACTTCTTTTGCACAGATTTCCCTCGTTTCACTTTGCTCCTTGCATCGTGGCCTATTTGTTGTCAGCTATGATCAAGttggaaaatggaaagaatCTGATAAAAAGTGCTCACTTTATATTAGCATACAACTGAAAAAGCCAGTGAGGACCAGTTCACAGAATCACATTTAAGTAATGCTAGCTGCCTTCTACTAACATTATAAGTTAACGTCTATCGTTAGCTATTTTTGGGGGAGTATTTGCTAACTTTATGTATGGCTAAGTGATGCTGGTATGCTGTGTACTCAATTTccttataacacattataacctTACAACGTATTTCTGATTCAGCACACCATAACTTTACATTCTGAGTTGATTCTTTCTGCCTTGttaaatgttgtaaatatatcttaattaaagactgatctctTCAAATCAT

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18040 PTPN23; tyrosine-protein phosphatase non-receptor type 23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384127 lncRNA upstream 543433 749451 ~ 753443 (+) True G324216
TU384129 lncRNA upstream 543433 749451 ~ 753443 (+) False G324216
TU384105 lncRNA upstream 583075 713395 ~ 713801 (+) True G324197
TU384065 lncRNA upstream 688174 607612 ~ 608702 (+) True G324161
TU384063 lncRNA upstream 689333 607045 ~ 607543 (+) True G324160
TU384216 lncRNA downstream 197 1310911 ~ 1315115 (+) True G324284
TU384226 lncRNA downstream 18933 1329647 ~ 1330871 (+) True G324294
TU384239 lncRNA downstream 28814 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA downstream 30411 1341125 ~ 1342780 (+) True G324305
TU384269 lncRNA downstream 67832 1378546 ~ 1378940 (+) True G324328
XM_034298042.1 mRNA upstream 109515 1185520 ~ 1187361 (+) True LOC113541446
XM_034298040.1 mRNA upstream 129918 1138279 ~ 1166958 (+) True LOC117595784
XM_034298039.1 mRNA upstream 172695 1103739 ~ 1124181 (+) False LOC113525078
XM_034298038.1 mRNA upstream 172695 1118262 ~ 1124181 (+) True LOC113525078
XM_026911517.2 mRNA upstream 286653 956584 ~ 1010223 (+) True cpne4a
XM_034297827.1 mRNA downstream 171185 1481899 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297830.1 mRNA downstream 171195 1481909 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297831.1 mRNA downstream 171198 1481912 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297829.1 mRNA downstream 171199 1481913 ~ 1484529 (+) True si:ch211-269k10.4
XM_034298234.1 mRNA downstream 397718 1708432 ~ 1713392 (+) True LOC113532957
TU384187 other upstream 133262 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 286653 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 490348 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 548401 745673 ~ 748475 (+) True G324206
TU384064 other upstream 686867 607612 ~ 610009 (+) False G324161
TU385279 other downstream 831792 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 899508 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 899508 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 1254986 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 2700696 4011410 ~ 4013538 (+) False hamp

Expression Profile