RNA id: XM_026924357.2


Basic Information

Item Value
RNA id XM_026924357.2
length 2809
RNA type mRNA
GC content 0.42
exon number 6
gene id rab5ab
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3714016 ~ 3722769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcaaaaaaaaaaaaaacgaggaaGGAATTTAACTCTTGTTTTTTTGCTTCTCGGTTTTCTCTTTAACTTGATCGTGAAGCGCGACTGAAACACGCTTCTGCTCCTTTTTTGTTAATTCGGAAAGCAGGTACTTCATGCGAGTTACACAGATCCAACTCAAGTCCATAACAGGTGACTGGTGACTGGGTCATGGCAGGAAGAGGCGGTGCTACAAGACCTAACGGGCCGAACGCAGCCAGCAACAAAATCTGTCAGTTCAAACTGGTGCTTTTGGGCGAGTCTGCAGTCGGCAAGTCCAGCCTGGTGCTGCGCTTCGTCAAAGGCCAGTTCCATGAGTTTCAGGAGAGCACGATAGGAGCGGCCTTCCTGACTCAGACGGTATGTTTGGATGACACGACAGTGAAGTTTGAGATCTGGGACACAGCCGGTCAAGAGCGCTACCACAGTTTGGCTCCGATGTATTACAGAGGAGCGCAGGCAGCCATAGTGGTGTATGACATCACAAATGAAGAATCATTTGCACGTGCAAAGAATTGGGTTAAAGAGCTTCAGAGGCAAGCCAGTCCTAATATTGTAATAGCTCTGGCAGGAAACAAAGCAGATCTTGCCAACAAGAGAGCACTGGACTTTCAGGATGCACAGTCTTATGCAGATGACAACAGTTTGCTTTTCATGGAAACTTCAGCAAAGACGTCAATGAACGTGAACGAGATTTTTATGGCTATTGCAAAGAAACTCCCCAAGAGTGAGCCACAGGCAGCCGGAACAAGTGCAGGCCGAAATCGAGGAGTGGACCTGGCAGAGACAGCGCAGCCTGCCAAGGGGCCATGCTGCAGCAACTAACCACCAAACGCACACATTCTCACCTCCCAACTAACTCTGCATCACTTCTGGACATGGGGCGCATCCTTCCAAACCTCGCTCCCTGGAACTGCTAAAGACTCTGTATAGCTCTGTTTCTAatacctttttgttttgttttttttcctttggttttttttttattttttaagcagGTATAAGTACTTAGGTATAATGGATGCATGTATCACTACAAAGcctaaatacacatttttaactTAACATGGGGTAAAGATAACTAGGTCGAATGAGAGAGGAAGAACTAGAGCTTGGGTGcgcgtgtttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgcatgtgtgtgtgttgtatagtgtagtattaaGGATGTGGAGGCACAGTAACATGTCCTGACCGGGTTTGGTGGCTGTTGGATGCTGGTATTTGCAGCTAAGTCAAGCTGTACATGCAGCtttcagtgtgtttgagtgcCATAGTAGAGAGATGAAGAAATCCATCATCTGTGGAGGTCTGACCAAGAACAACCCGATCCGAAACAAAGATGCTACCTAAATGATCACCGTTATATGTGTAAATGATGTAGAGAGAAGCCGATTTTGCATGATTTGACTGTTAATCTGGTAAAATAATTcccatgttaaaaaataatcactcaTTAACTAGTAAAGCATCCAGGATTTTTGGAATCTTCTACTTGTAATATTGGCCATTTTGGTGTTGAAGTGCAGTTCCTTAATGGGAAGTAACTTTTCCCATCCATCTTGCTGACTTTCAGTTGAATTTCAGCTCAGATATCATTTGCTTAAAAGAATCCAATGGATGCAAAATGAGGGCTAAATCAAACCTCTGCTTATCCAAGCTATTTGTTGTGTAGCTATTAGAGAACGATCATCATTCTACCTACACATTCCTCCTTGAGTCTAAGAATACactctctccttgtctcttcTTGGAGATTATTAAAGTATTGGTGGCTGACGGCCTGAATCTGTTACTGTCCTGGATGGACAGCCTATTCTGATAGTCAGACCTGATTTGACCAACGGCTGTGTCTTCTGAGGGAAATGAATAAACGGAGGGTGGCGATTACGTTCTATCCTAGTGTATGGGCAACTGTTGATAGTTATGTGTTGGCGTTACATACGTTAACACTAAAGAACAGTAGATTTAAAATCTTCCATTCCCTCTTTTGAGCTACAGTCTCTTTCATAAATGTCACAAATAATTCTTCATAGTGCATGGCTGATGCATTATTGTGATGCAGTGTAGTACAGCTACGAAAACTAAAGCTTTGAGGACTCTTTATTGATTCATCTTTGGAATATATTCCGGTCATTGAAGGCGTTACTGCCCAGTGGTAGAAAATTTTCAACGTGTCAAGGTAGAAACCCAGTATATCTTGCTGTCTCCATCTTAAATACTACTATATGAACTGTTTGCCATGATGGACCGTATGTATGCACTCTTCTTTTTTGTACAGTTCCCTTTAAATAAGAGATTTCTTTTCACAAATTGGCCAAATAATGTTTTGAtggttgtctttttttcccttgtatGTAGTGTTATTAACAAATCAACTTGACATTTAACTCATGGTCTGTCTAGTGCTTCTTTTGAGatgctaaatgtttttttttctattgagATACTATCAAGTTGCACAAAATATgagttgtatttttaaataagtcaTTATGAGACGATGCCTGCCTGGTGTCTCTGCAGTGTGATCAAGCTGAAATGGACCACAGTGGGCTTGATTAGTGCTGCTAAATTGCCGCAGGTAGCTGAGGTAATTAATTAGCAGCCATCCGAGAGCCGAAAAGGATTGAGTGATGTAACAGCATTAACACTGAGGGactgattgttttttaaatgtccagGTACTAGTTAATATTTCCAATAAAGGGGGTGAATTGTATACAGTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07889 RAB5C; Ras-related protein Rab-5C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386344 lncRNA upstream 11863 3701334 ~ 3702153 (+) True G326023
TU386119 lncRNA upstream 391686 3319917 ~ 3322330 (+) True G325815
TU386041 lncRNA upstream 453835 3258929 ~ 3260181 (+) True G325754
TU386009 lncRNA upstream 505054 3139312 ~ 3208962 (+) True G325730
TU385973 lncRNA upstream 641943 3071849 ~ 3072073 (+) True G325697
TU386457 lncRNA downstream 157908 3880677 ~ 3880941 (+) True G326131
TU386508 lncRNA downstream 222613 3945382 ~ 3946133 (+) True G326178
TU386524 lncRNA downstream 244763 3967532 ~ 3973002 (+) True G326193
TU386648 lncRNA downstream 596446 4319215 ~ 4359118 (+) True G326288
TU386632 lncRNA downstream 626012 4348781 ~ 4351847 (+) True G326281
XM_026924247.2 mRNA upstream 243804 3425575 ~ 3470212 (+) True LOC113532711
XM_026924434.2 mRNA upstream 291022 3365121 ~ 3422994 (+) True LOC113532798
XM_026924435.2 mRNA upstream 291022 3415273 ~ 3422994 (+) False LOC113532798
XM_026924436.2 mRNA upstream 291022 3415391 ~ 3422994 (+) False LOC113532798
XM_026924044.2 mRNA upstream 403198 3305106 ~ 3310818 (+) True LOC113532606
XM_026924761.2 mRNA downstream 126293 3849062 ~ 3878524 (+) True ube2e2
XM_026924488.2 mRNA downstream 159202 3881971 ~ 3891903 (+) True nr1d2a
XM_026924020.2 mRNA downstream 194646 3917415 ~ 3935176 (+) False LOC113532591
XM_034298268.1 mRNA downstream 194648 3917417 ~ 3935176 (+) False LOC113532591
XM_034298267.1 mRNA downstream 195246 3918015 ~ 3935176 (+) False LOC113532591
TU385671 other upstream 1144277 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 1499717 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 1499755 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 1569505 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 2550402 1118268 ~ 1163614 (+) True G324258
TU386582 other downstream 288641 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 1198211 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 1202017 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 1609499 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 4179023 7901792 ~ 7902608 (+) False LOC113532663

Expression Profile