RNA id: XM_034298124.1


Basic Information

Item Value
RNA id XM_034298124.1
length 4171
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC113532763
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3616595 ~ 3672133 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGACGTAATTTGTACAGTGACAGCCGACTGTGTGCGACGAGAGATAGCCATCTCATTGAGTCACTTGTTAAAAGGCTGACTTTACCTCATGTTCTAACGAAGGAGGATATTTAGGCTcgaacagagtgtgtgttgaaGGATCTCCCTGATTCACTCTTCACCCTAAAGTCCAAATGAACCGGCGTGTTCCTGCTCAAGGTGACCGTGAGCAGTGGAGCTGAGTCATGATGGACCATCTCAGCGAGGCGTGCCTGGGGAAGGAGAACTGTGAGCTAGTGGGCGGCTTGAACGACGCCAAGGGCCCCCCGGCCAAGATAGCCAGGCTGGAACAGAACGGCAGCCCTCAAGGGCGCTCGCGCCTGGGCAGCACCGGCGCCAAACTCTCCGGAGTGGCCTTCAAACCCTCCCCACACCTGCTCAAGTCCTCACACAAGAGGGGTAACATGCTTCCCGTGTTCTGCGTGGTCGAGCACTATGAGAACCCGATAGACTTCGACAGCAGGGAAGAGCACGCCGAATTCGTGCTGGTCAGAAAGGACATGCTCTTCAACCAGCTGATCGAGATGGCGCTCCTCTCACTGGGCTACTCTCACAGCTCTGCCGCACAGGCTAAAGGTATGATTCAGGTGGGCAAATGGAACCCTGTTCCCCTGTCGTACGTGACCGACGCCCCTGACGCCACCGTTGCCGACATGCTACAGGACGTCTACCACGTCATCACGCTGAAAATCCAGCTGCACAGcCACCCtgaatcactctctctctttctctctctacctccATCTGTCCCTCCATGCAGTTGTCCTAAACTGGAAGACTTGCCTCCCGAGCAGTGGACCCACTCGACGGTGCGAAACGCCCTGAAGGAGTTACTCAAAGACATGAACCAGAGCTCTCTGGCTAAAGAATGTCCCTTATCACAGgagagagaaaaaagcaaggctggtgagggaacgactgtttatagctgctataacaGCATGATATCCTCCATCGTGAACAGCACTTACTATGCAAATGTGTCTGCGGCGAAGTGTCAGGAATTTGGACGTTGGTATAAACATTTCAAGAAGACAAAAGATATGATGGTCGTGCGCCAACCCTCCCAGCTGGAGGGCTACCTGGGGACGTGCGTCCTCCACGACAGCCCACGTGCCACCGCAGTAGCCGAAATGGACGGCTTGTCAGAGCTCTCACCGCCCGGCACCAACCACCTGAGCTTCAGTCAGCAGCCCATCCCGGGCAGCACGGCCGAGCAGCCCCCGTCCCCGGTGCCTCTGGCCCACAGCGGTCAGGCCCCAGGCCGTGCCCAGCTTCCCGGTCTCCACCCCGGCCTGGTGTCCAGCCCCATCAGTCCTCAGCTGGTCAACCAACAGATTGTCATGGCACAGATCCTGAACCAGCAGTACGCTGTGAACCGGCTCCTGGCGCAGCAGTCCCTGAACCAGCAGTACCTGAACCACCCGCCGGTCAGCCGGGCTCTCAGCAAGCCCCTGGATACGCAGGTGTCCTCCAACACAGAAGTCTCCTCCGAGATCTACCAGTGGGTGAGGGACGAGCTGAAGCGAGCCGGGATCTCGCAGGCCGTGTTCGCTCGTGTCGCATTCAACAGGACTCAGGGATTGCTATCGGAGATcctgagaaaagaggaagaccCCAAAACGGCGTCTCAGTCCCTGCTGGTGAACCTGAGGGCCATGCAGAACTTCCTGCAGCTACCTGAGGCCGAGAGAGACCGTATTTAtcaggaggagagggagaggagttTAACGGCAGCATCCTCCATGGGCCCTGCGCCGCTTATTAGCACTCCTCCCACACGCCCTGTCCAGAGTGTAGGAGTGAACCAGATGCTGCTTTCCAGTTCAGATCCCAGAATCAGCTGCTACTCCGACTCGcccaGAAGAGAAGAATGTAACAACATCAGACCAGAAGACTGGAACCCCAGGATTCCAGTTGGGATCTCTCCTGCGTCTCGGCTCCCTGCCCAGGTGAAGCCCCTGCCACTGGCGTCCGAGTGGAATGGCAAGCAGGAGAGCTCCGTCCTCAACATCAGCTCGTCCATCTATGACGAGATCCAGCAGGAGATGAAGAGGGCCAAAGTGTCACAGGCCATGTTCGCCAAGGTCGCCGCTTCCAAGAGCCAGggctGGCTGTGTGAGCTGCTGCGCTGGAAGGAGGACCCGTCCCCGGAGAACCGCACGCTGTGGGAGAACCTGTCCATGATCCGGCGCTTTCTGAGTCTCTCGCAGTCGGAGAGAGACGCCATCTACGAGCAGGAGAGCAACGGAGGGCAGCAACACCACACCGAGAGACCCACACACCTGCTGCACATGCCCACCGAGCCGCtgcagCCCCAGAACCACCCTCCACCTACAGCCCAGCTCCAGCCTGCCCTGGCGCTGCCCCACCCGTCACAGCCGCTCGTTTCCCAGCAGCCTCAGCCTCAGCAGCAAACAGGACCCCGCCTCCCGCCTCGCCAGCCCTCCACCGCCGCACCCGCCGAGGCTGAGGACGAGTCGCGTCAGGCTAAAGGTCGCACCGGCGCTCGTATCTCCTTGGAGGCGCTGGGAATCCTGCAGAGCTTCGTGCAGGACGTAGGGCCGTACCCGGACGACGAGGCTGTGCACACACTCTCGGCCCAGCTCGACCTGCCCCGGCACACAATCATCAAGTTCTTCCAGAACCAGCGCTTCTGCGTGCGGCCCAAGGAGGCGGCATCGGGAATCGCTCTACCCGCAGCCAGCGAGCAGGACGAGGTGGGCATGACGGACTTCAAAGAAGGCGAGCTGCTCAAAGAGCTGGACGAGAGCACTCAGACTACTAGCATCTTCACCATCAAGATCGAGGAGCACGCGGGCGCTGAGGGACAGTGTCAAGCCGAGCAGGAAGTGAAAGAATAAACCTCGAGCTCACACTCTGATCTCCTCCAGCAGTAGAACTGTAAGACTTTCAACTCGGGACTGCGTAATACAGAAGTATTACCTTTTTGTAAAAGCCCTGTATTATTATTCCACTGTAAAGATTTGCGCATCATTAAATAACCTGcacaatgaaacaaaatcaaaaaaatgttcaaaaaaaaatcttaactaTGTTGCCGTGGATGTTTGCTGACTGCACTTGATGTATGTTGTTTTTACACTGAACTTCCAAACTactgattttaaaagaaaaaaatcgaCTCAGTTGAAGTTTGATAGACTTTGATAGATGTTTACGTATGTGGTGttaactggattttttttttattttaatgcaactgataataaaataaaaacggGGGCCTTAACGGTGACAAACTGCTGAACAGCACAGCGTTTTCTTTACGAATCGAAGGATCACGCAGGATCTGGCGCCCCTAAGACCTGCAGGTAGACTGGAGGAGAATAGTTCACTCTTTCaatctttaattattatttgtttggaagaaatataaatatatatatatagacatatattaattgtaaaaaaatatacagtctTAAAGAAACTATGCCAACAAATGCCTTGTACTATATGGCACTGCCGATGTTAGATTATTTTGCGAAACCTTTGTCACTGTAATTTTCAGGATTTTCACAcaggtttaaaaatgtgaatcaCAATTTATTCCTCATCATCCCACgttatttatttgcagttttCTGATGTAATTACGTAATTTCTGTCacagcacattttttattttgctatttataaatgtaagttTGATGGGCAGTAAAAATCAAAGTGTCTTAAAcgttttaaatggaaaatgtgctttaacagttgcctaaaaaaaaaagtgctgtatgTCAAGCGACTCATGCTACAAGCTTCACGATTAATGTTGTATGCAATTTTTCCTCTCATGCAAATAAGCTTAGGAGAACGACTAACCTATAGACCaccttagagaaaaaaaaaaacatatgcaaTTTGTGTGGAATTCGATGTTTGCGATGTGTCTTCCTTTGGTTAACAATACAATTCAAAGCTATTCCTGTATAAAATATTCTGTATAAAAAGGAGCGTTTGTTTTTTATGAGTTTATCGCAAGGAGAACACCGGTTATTTTGTTACGACTGACTGTTTTATAAGTGTTTCTCGGTTTTTCCTCGAGCGAAACTGTTCTAACTAGGAGTGGTTATTGATTGTTAATGACACAATTAAACTGTTTGTATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386120 lncRNA downstream 294233 3319915 ~ 3322362 (-) False LOC113532799
TU386121 lncRNA downstream 296347 3319815 ~ 3320248 (-) False LOC113532799
TU386063 lncRNA downstream 365148 3230021 ~ 3251447 (-) True LOC113532533
TU386074 lncRNA downstream 379267 3209206 ~ 3237328 (-) True G325780
TU386073 lncRNA downstream 415345 3199227 ~ 3201250 (-) True G325779
TU386393 lncRNA upstream 50402 3720689 ~ 3796359 (-) False znf385d
TU386460 lncRNA upstream 151618 3821905 ~ 3878517 (-) True G326133
XR_004576980.1 lncRNA upstream 203636 3873923 ~ 3881884 (-) False LOC113532993
XR_003403379.2 lncRNA upstream 203636 3873923 ~ 3881845 (-) True LOC113532993
TU386553 lncRNA upstream 287216 3957503 ~ 3958995 (-) False vsig10l
XM_026924438.2 mRNA downstream 212177 3319544 ~ 3404418 (-) False LOC113532799
XM_026924437.2 mRNA downstream 212177 3319544 ~ 3404418 (-) True LOC113532799
XM_026924864.2 mRNA downstream 353681 3252693 ~ 3262914 (-) True notchl
XM_026923933.2 mRNA downstream 377684 3232434 ~ 3238911 (-) False LOC113532533
XM_034297947.1 mRNA upstream 31047 3701334 ~ 3712518 (-) True efhb
XM_034297948.1 mRNA upstream 32009 3702296 ~ 3712518 (-) False efhb
XM_034297811.1 mRNA upstream 61943 3732230 ~ 3796368 (-) False znf385d
XM_034297810.1 mRNA upstream 61943 3732230 ~ 3796368 (-) False znf385d
XM_026923903.2 mRNA upstream 61943 3732230 ~ 3796368 (-) True znf385d
TU386070 other downstream 377448 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 1519160 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 2165879 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 2245566 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 2514478 1047583 ~ 1102117 (-) True nek11
TU387191 other upstream 1293330 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 1293330 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 2159187 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 2205809 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 2759573 6429860 ~ 6429932 (-) True trnam-cau_47

Expression Profile