RNA id: XM_026924409.2


Basic Information

Item Value
RNA id XM_026924409.2
length 8353
RNA type mRNA
GC content 0.42
exon number 8
gene id iglon5
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 4070056 ~ 4206519 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGCTCCGCTCTAGACTCTGCCTCGCGCTAACTATGCGCGTAGTGTCGCGCTGATCCGCTCGCTCGCGCCGCATTCCGAGAGAGAATCCGGAGGGGGAGATACACCAGTGAGAGCGCGCGCTCTGTGATAAGCCCTTCTTTTTCACTTCATCACTTCGTCTGGTCCTCTCAGGCGCGTGCGGGGATGCTCTTTGCGTGAGGGATATTTGCGTGCCTGTCGGTCGCTTCTTTCTTGAGGGGTCACTTTGGAGCAAGGAGGAGAGGGAAAAGGCacgaggaggagaaaaaaaaacccctcgCATCTAAGACATTTTTGGAGCATCTGTAGTAAACAAGAGCAGAGGAGGAGCGCGTGCGGTGCGCTCTATgcgttgtctctctctctttcaaagaaaaaaaacaaacaaacataaggACAACCTGCTGAATTGCATCACGGTGCTCGAGGAGAGATACAGCGATTGAAACTCGTAAACATGAGCCGCGCGATCTCAATCTTCACCGCTTTGCTGCTGGCGCTGCTGCCTGAAGGACCCAGCAGTGTCCAAGCGGTGGAGTTCAGTTTTTTCCCTGACAATATTACAGTGCTGGAAGGGCAGAGCGTCATTCTGAGGTGTAAGATTGACGAGGAGGTGACCCACAAGGCCTGGCTGAACCGCTCCAACATCCTGTTCACAGGGAACGAGAAGTGGTCTCTGGACCCACGGGTGTCAATGGCCAACAACAACGACAGCGACTTCTCCATCCAGATCGAGCGGGTGGCCGTGGCCGACGAGGGTCCGTACACGTGCAGCTTTCAGGCGCGAACCAAGCCACGCACTTCCCACGTCTACCTCATCGTCCAAGTGCCAGCGAGGATAGTCAACATCTCTCAGGATAAATCGGTCAACGAGGGCGATGACGTGAACCTCTTTTGCCTGGCGATTGGCCGGCCCGAGCCCACCATCACCTGGAAGGACATAAAATCTGGACGCACATACGAGGGAGAATTTCTGGACATCACAGAGATCAAACGGCATCAAGCCGAAGAGTTTGTGTGCATCACGAACAATGGTGTGGCGCCGCCGGATACACACCGCGTCAAGGTCACAGTGAATTATCCACCCATGATCACAGATGTAAAGAATATGCCAGCTCAAGTGGGGAAGACGGCCATCTTGCGCTGTGAGGCCATGGCTGTCCCCACTGCATCTTTCGAGTGGTACAGGGACGACCGGAGACTGGTGGAGAGCGACAACACGCTGCGGATTAAAAATGAGAAGACACGTTCCCTGCTGCTCTTCACCAACGTCACCGAGAAACACTTTGGCAACTACACCTGCTTCGCCTCCAACCGCCTAGGGGCCTCCAATGCCAGCATGCTTCTCTTCAGGCCGGGGGCAGTCTATGGCGGAAGCGTGTCGCTAAGCGCCTGCCTATCGGGACTCGTCTTCTGGCTCAGCCTCTCCATCTCCGTCCTGCTGAAGGTCTAACACGTTGCCGCCTCGGAAAAGGAGTCTTTAAATGACGAACCCAtcactgtgaataaaaaaagaattatgcATTAACCCAGGAGCCATCTCTTGCATCTTATAATCACCACCCTCCCCTCTCCCCACTCATGTCATTCCCACCCGTCATTGGCAACCACTGGCCACTGCCTTTCCCGCTTCTCCAGTGAAGGTCACCTTTTCAATGTTCATAGCTGTTGTGGTgatgattataaaaaaaaatatgaatgctAAAAATGTGAAGGTGCCGAGCGGAGCGTGTTTTTGTCTCAGTGTGCACGTGCTGGATCATGGTTGTATATTTGTGAATGGTGTCACATTAATGGTGTTTATGAGGAATGtgatatgatatatatgatgatgatgatgatgatggtcaggtgacccTGTAAACAAGCTGTGGCTGTTCACCAGCAGGCCACGCCTCAGTGGCCTTCGCTCTCTCGGATCTGAGCAGCAGAATTTTTCTGTGAATGATGTCAAATCTCATCTGCGCTAAGGGTCAACATTAGCATGGGGGGAGGGGAAAACTTATTTGTCCCCCCTCTTTTTGCATTTGCTGGAGGTCTTGACCCAGGGCAAAGCATGTGACCCCAGTCCGGCCTTCCAGTCTTTCCTCGGTCTCATCGCATTACCACATTACTACCTTCACCCtcagtgtaaatatatatgcagTAGAGGCCACCCCATAATTCCATATTCACCATCCGATTTACGGAatacatttcccatcagcctcTCTGTTTCAGGCTTTTTTGGCTTGGAGGTTATGTTTCTGGTGTCTCCCCTGCCCAACCCCCCCTGAAGCCGTTGATCACTCTTCCTTGTCGCTTGTTGATAGCATGTACTGGTTAGAGCTGTTCCTGTTGTGCCGTCCATCCAAGCCCGAGCCCTCTCTATAGCCCCTGCACTGTGTACATTTAATCTGCAAGGTTAACTgctaattgcttttttttttttttggtgttaataatgatgatgatgaagatgatgatgatgataatgatgttaATAAGTATTTGAAATCGATATGATAATTACATgtgagaaaaaataataataatcccagAGCCATGTGTGCGAAAATATTTTGTACTttgctctgaaaaaaaataataataataagttttttttttcaaagtgttGTGCTCTATTTTGCCATGAgaagctttttaaaaacaaggtGATGAGCTGGAGTGCAGCAAAACACTGCTTTGAATTAGCCCCCCTTTGTGATGCTAGCATGCCACAATGCTAGACTAATTTAACAAGATAAGAGTTATTACAAAATGTAGGGTTTTGCTGTGCATCCACGCACTCACAAAGGGAGCGTTcaatgaaatgtaatataatttgtaccGTGTATGTATTCAAACGTTTCTTTTTAAGGCTCTGTACTGTATCGAATGTATGCTAACCTTTATGATGTCCCACCGTTTTTGTCAGCCATCTTGACGTCACAACCAAAAACTCTCGGCATACTCGAAATCCTGTGTGTTCGCCCCCTTCGTtcgttccttccttcctccagCCGCTTTCGAGAGGGAGCCAAATTAGTGGGAAATAGAGACGTAATTAGCGAGCGGATCGCTAAGCGAGGGCGCCGTCGCTCTTctcctcatccctccatctgcTGAGGAGCAGAGCTCATAAATCAAGCTCAATCCAGGAGCTGACAGGGACCCTCTTCAAGGACGACAGTGTCTCGGTGGTGACTAATTAACCACCACTTAAAGGCGCGTAGCGAAGACACTGCGACCATGTGCTCGGCGGCACATGGCTTAACACTGAGCGCTAGTTTCCACACGCGTATGCTGTATGCAATCTCTTACATTCATGGACAAAAAGCAAGGTTAGGAGCCGATCATTCAGTCACGTAAGTGCTGTATATAGCATGTTTTGACATTGTTGTGTCCCCATAGCTAATTTTGTCAAAACCAGCAATAACCAAACTAAAACGTAAATGTAAAGAAGTATCTAATTGGCGTAATCTGTTAAGTGTTGACCAGAGTGCCATGCTAATCTAATCCTGAAAGTGTTGTGTGATAAATTAATGTCATGTTTGTGATGGAAGGAGCTCTGACAGCGGTGTTTCAAGGTTGACCCGGCCTATATGCATCTCCATTTCTGttccatatctctctctctctctttctatctatctatctatatggatctatctatctatggtGTACAAATCCGTACTGTATAGCCACAATTGCAACACACACTTGCATGTTTTGAGATCCCATCCAAAAATTTCTCATTTGGGTTCAATTTGAAGCACAAAACCAGTCCCAGTGCTATTttttctctgtatctgtctgtctttgtcccTCTTTTCCTGTTCACGACTGCGCCGCCCATGTAAAGCTCAATGATCCATGGCGAACCTATCTGTGCTCATGTTTTCTCCTGAAcaataagtaaacaaaaaaaagataacaagtatgtcatgtttctcaatgtgggttataaaaaaaaaagcatgtcaaTGTTATGGGTggattttccttttaaaaaagtgtgaatatgaaaagtgtgtgtgtgggaaaggTTGGCTTTAAAATACGGAAGATTGAAGTGTGATTTGATATGAGCTCTCCTGTAGAGATGAGTGATTGTGGGTTACCTGGAGGTCTGGTTTAAGGGGGTGAAGAGAGGCATGTGAGGCAGGAAGGGTGAGATGGGCCTGCGCTGACCAGACACTGAACTCCCTCTGTATGCATCCGATTAACTGGAAGACACCAGCTACAAATCAGCTTGCAGATCCATTTTTTATAAAGGCAGATTGCATGTATTGATTTTTCCTGCTGCTTCGCTCTGCTGCTTGTGTccacacatttaaaatgtgcTTCAATGCTAATGTCCTACTACTGTCCACTGAGACTGATGGATATTACATGCGTTAGTAAGAGGCCTCTAATTGATCCACAaatgctgcagttttttttctttagccaCATGGATGCTCACAACATATCCAATCAGGGAGCTTACATGTGTCCAATCAGGAGGCACCTGAATTTACACGTGTCCAAACAGGAGGCACCTGAGATTACACATGTCCAATCAAGCACCACTTTAGCTTATATGTGTCTAATCAGGAGGCACCTGAGTGTACATATGTCCAATGAAGAGGCACATGAGTTTGCATCTGAGCATACAAGTGTCCAATCAAGCACCACTTTAGCTTATGTGTGTCCTGGTACCTGAGCTTACACCCGTCCAATCAGGAGGTATCTGAGCTTGCACCCGTCCAATCAGAAGGCACATGAACATTCCCTGCAGGACTTTGAAGAAACAATATGagtcttattttcttttaatagcTCTAATGTCACTGTTTTACTTTTCCATTTATTGAGTTAACAGCcgttttttccccaaagtggCATTTTCACAGACATGGAATGAAACCAAAAGCAGAAACGAAGGGCAATTTACTaggaacaaaaacagaaacagaatcaTCTTTAGCTATTCTAGTATGGAAACATTCATTTGAACTGATTCCCagttaataacaaaattaaaatatattatttaaaataatttagccATATACAACAAGTTTTTGTTAAtcttctattttattatattagacCTACATACAGCCTCTAAAATGAAAGGAATGAACCATTTTGTTCTAATGTTAGGGAGGTTGTGTTGGAGTTggaagacaacaacaacaaaaatgttcaaatatgtTAAAAAGTTCTTCTCAGAGCAAGCTGAATTGATTTCTGAGGCTTAGAAGTGAGATAGAATTTAATTAAAGTATAGatctgagcagctgagggttaagagTATTGCTTAAGGGCTTAATGGTTGCTTGCTGACAGTAAtgggatttgaacccacaaccttctgatcacaGATACAGCACTTTAACCCTTACTGAAATGActggaattattttatttagatgcTTTGTACCAAACTTCCAAATTTGATTTTAACCAAATATAAGGCAAAATGCACATTTAATtcctgatagatagatagatagatagatagatagatagatagatagatagaattaTTATGAATGAGGTGTTAAGTTTTTAAAATGACCCAATAATATATAGTTTCACTTTAAGATGTTTGTATGAAATGCTTTGTTATAATTTTATCGTAATCTGTGGTCACTTTGTTGCAGttttaatgtttgtaatgtaatattCAGAGGCCACTATAGAGAATGATGTAGTTTAATGGTTTAAGTTCAACAATTGAATAAGaaaacaattattaatttaagaCATAAATAGTAATACTTTGAGAAATGTCAGTGCATATGGATACTGTGTATCTTGAAGTAAAGGTGAGATCTCTGTGAGTTAgaaatggaaacaaaaaaaataaggtCTGTTTGGTTTTTTAGAAATAGCATAATTCAGTTTCTTTTCAGAGATAAGAGTATTTGTTGTCACGGGCAGATGATGCAAATAGAATAAAGAGAAAGGATTCTTCTGAAAGATAAAGAAAGATATAAACAAGGAAAGAATGCTTTGAGAAGTAGAATAAGggaatgaatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatcataTTAAAGCAATAGATTggtcaaaaatgaaatttacacaatttaccCATTAACACAGATGgattcaatcagccaagacatctTCAGTGTCCGATGTTTAATTCTtgggctaatgtagctaacaagtaatgaagCTGGAGCCTgttcttcagtgatgtcacacagacATATCAGTGTGGGTTAGGACACAGAAGACTACTATAATCTATACCAGGCTTCGTCAACTGGCAGACCAAGGTCTGGATGCAGTTCCAGAAAAGTATTTCTGTGGATCAATCTGAGAACtcaaatactgtagcagagccaaTCAGTGtacggggaaaaaaaactgtttgtagTTCAGCGAAAAACAATGGCTGATGTTGTGGCTTGttgcagccaatcacatgcatttatgtaaatgatgtaGTCGAAGGCTGTTCATCAgggaaagaaaatgttttgacaGACTTTCATAAATTTGTCATTTCACTTACcctgtctggtctgattagtgaattGTCAGCATGgattgttaaaaacaaaacaaaacaatgtttaaagatcagaagtatatatttattctcCACTCCAAGTTCAAAACAGACATCTCCGCTGTTAGTCAGATGTGGCGATAGTCAAATCTGATAACGTGAACTgccacaacaaaacaaaacataactatttatgttttattgtatttcgATTATAACCATGAACTAATCCTGAAtgattaagcattaaaaggtaacttgTCGCTATTCAGTCATGTTACTTGCTTGCaagcaaagaaagaataaacaaaacttCACTGTTTACCCAAACACTATAACATTATGAGGGCTTGGATGTAACAACATTAATGCATGGAAAGACTAATCAAGGACTAACACAAAATAGGTGATCACACATGGATAACAAACCAATGAGGAGCAGGGGTGGAGTCAGAAATGGAAtagaaatcaaaacaaacatgagCACATGGCATTTATGACATGAAGGGTAAACTGTTACAGTTGCTTCCTGGGTCCTGCCTCCCAAAGGTGGAATTGTACCAGAAAGCTGAGGTGATTATTATGCAGAAGGTTAATTAGTTAGGGTTAGAATTTTAACATCTAAACACAAGCTAAAGTATTTCTGCTACTTTACAATCTTGttataaaaaaacagaagcaagtatATGAAAATCTTGGCATCGGTTTTTGAAAAAGATTTTGGACAAGAGAATTCCATCACTTGTAAATGACATCATCCTTATAATATTTGGAGCTGACAGTAAAAAAGCAGAATGCTGGACACCAAACACGTCTTGGATGAATTGGGGTGTGGGTAcaaatgtgtaaatttcattttatgctAAACCATCCCTCTCCATTTGATGTTTAATTATCCTGCTAATTATCAAGGCTTTGTGTGCATAAGGTTTTTACGCAACAGGTGCAGCCTGTCAGTCATGTACAGCTGTATCGATAACACTCCGCTAATTATCTGAGCATAATTCAGTAGGTGTATTAAATGAGACATAGTTGAGGCTGTGTGTTTTCCTCAAAGCAGGAGGTTTAAGAAGCAACACTGCTGTGCACAAACAAGCCCATCACTCTGAATGTCAGTGGAGTGTGTCGCTCGCCCACTGGAAGCTGAAATTTCCGTCAGTCAAATGGGTGAACACAGGCTGTGGCATAGCACTTTGGCAGTGTTTGGATTGAAAGCACTTGATGTAATGTCAGGTGTTCACAGGTTAACAGGGACAGGTCGGTCAGTGAGTCAAgcccatctccctctctctgtgccCTTAGCCTCTTGCTCTTCCTccactcctcttcctcctcctctcctctggAAATGAGATGAAATGCCGCAAGCACCTCCAGCTCTTCATTCTGGTCTTTCTGTCGTATTAATGTGTGCGTTTaggcatgtctgtgtgtgggcACACATGCATGTTAGGGCATGCATTCTCTGACCTTGATTGATCATGACCTACTTTACATTCCAGTTCTCCATGCAattcagtgttttctctgcaGCATCAACAGAAAAGATGGAAAATCCAGAGCATTGTCTTCCACCTTCAACGAATCCTGTGCCGTGTTCCAAGTCATGTTTCagattttgtctgtttttgtcatttttattgtgtctgggttttgttttgttttgttttaatttttgtttttaaaagtccATAAAGGAGAGAACAAAGTGAAGGAATTAATCAGAAAGggagaaaataaaactgaattttgtttttaacataa

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG:

id description
K06773 OPCML, OBCAM; opioid binding protein/cell adhesion molecule-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386524 lncRNA upstream 97054 3967532 ~ 3973002 (+) True G326193
TU386508 lncRNA upstream 123923 3945382 ~ 3946133 (+) True G326178
TU386457 lncRNA upstream 189115 3880677 ~ 3880941 (+) True G326131
TU386344 lncRNA upstream 367903 3701334 ~ 3702153 (+) True G326023
TU386119 lncRNA upstream 747726 3319917 ~ 3322330 (+) True G325815
TU386648 lncRNA downstream 112696 4319215 ~ 4359118 (+) True G326288
TU386632 lncRNA downstream 142262 4348781 ~ 4351847 (+) True G326281
TU386679 lncRNA downstream 185065 4391584 ~ 4394784 (+) False hmgn2
TU386681 lncRNA downstream 192159 4398678 ~ 4406561 (+) False LOC113532991
XR_004576935.1 lncRNA downstream 259989 4466508 ~ 4468850 (+) True LOC117595758
XM_026924670.2 mRNA upstream 56525 4011380 ~ 4013531 (+) True hamp
XM_026924054.2 mRNA upstream 67620 3980428 ~ 4002436 (+) False LOC113532613
XM_026924053.2 mRNA upstream 67620 3980430 ~ 4002436 (+) True LOC113532613
XM_026924031.2 mRNA upstream 124826 3940385 ~ 3945230 (+) True LOC113532597
XM_026924032.2 mRNA upstream 130029 3935562 ~ 3940027 (+) True LOC113532598
XM_034297819.1 mRNA downstream 76769 4283288 ~ 4288230 (+) False LOC113532664
XM_034297820.1 mRNA downstream 77140 4283659 ~ 4288230 (+) True LOC113532664
XM_026924156.2 mRNA downstream 77680 4284199 ~ 4288230 (+) False LOC113532664
XM_026924919.2 mRNA downstream 87850 4294369 ~ 4303530 (+) False si:dkeyp-97a10.2
XM_026924920.2 mRNA downstream 87851 4294370 ~ 4303529 (+) True si:dkeyp-97a10.2
TU386582 other upstream 56518 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 1500317 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 1855757 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 1855795 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 1925545 2142506 ~ 2144511 (+) False bola1
TU386810 other downstream 714461 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 718267 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 1125749 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 3695273 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 4181668 8388187 ~ 8484833 (+) False LOC113532774

Expression Profile