RNA id: XM_026924432.2


Basic Information

Item Value
RNA id XM_026924432.2
length 3301
RNA type mRNA
GC content 0.52
exon number 21
gene id rgl2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1735617 ~ 1763406 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCggagggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctgttcaACACAGCGTTCACTTCTCCGCTGCAGTCACACGATAAGGCACTGACAGGCGATCAGGAGGTGGGAGATATGCAGGCTCAGAGTCACTGACTTCACTGCAGAAGAAAACACCGGATGGACGCAGCGCTCCGACACTAGCAgCCGCTTGCGCCATGCTCCACCGGAGTATGAGGACAGCCGGGGTGGAGCTGCCAGAGGTGGGGTCAAAAGATGTCCCTCTCATCGGCTACCGTCTCCTCCCGCCAGACACCGGCGGTCCTCCTGGTCAGGGGGCGAAGGACGCGGATGCCAAGGAACGCGCCTCCTGTCAGGTCGAGGCCTCCCCCATGAAAACCACTTGGTACTGTCCTCTCAACCTGTCCACTGTTACTGAGAAGGAGGAGGACGGCATCATCTACACGGTGATCGTGAAACCACACCACGGTGACCCTAATACACAGCCGTCATGTCACCGCTCGCAGTGTGTAAAGGCTGGGACAGAGGAGAAGCTGGTCCTTCACCTCCTCCACTCCTTCTCCATGGAGGATACGTCCTTCATCTCCATTTTCCTCTCCACCTACCGCTCCTTCACCACCACTGAGAGGGTGCTGGACATCTTGACGGACAGGTTGGGAAATCCACCAGGAGACAGCGGCAGTCCCACACGTCAGACCTTCAACAAGGCAGTGTGCACTGTGTTCAGCACGTGGCTGAGCGAATACCCGGAGGACTTCCACTCGCTTGGTGAACCCTCACGCCTGCTCCGCCTCGCACCCCTGATGCCAGACCAGAcggggtcagaggtcaaagtTCGGCTGCTGAAGATCGCAGAGGAGCTCAGTGACAAGTCCCTGATTCCTGACTCTGCTTCAAATGCTGCAAATGCTTTTCTCCAAACATCATCTCCCGATCCTTCAAAGTTCGACGCCACCAACATCCTGGCTTTTCCCTCGAGTATCATAGCCGAGCAGCTGACCAAGATCGAGACGGAGCTGTTTCTGAAGCTGGTGCCGTATCACTGTCTGGGCTCGCTGTGGTCTCAGAGAGATAAGAAGGGCCATGAGGGTGTGTGCTGGTCGGTCAGAGCCACGGTGCGTCAGTTTAATCGTCTGGCCAACGCCGTTACAGCCTCGTGCCTGTGGCAGACGGAGCTGAAGACCCAGCAGAGGACGCGCCTTCTGGAGAAATGGATCAGCGTAGCCGAGGCGTGCAGAATCAGGAAGAACTTCTCATCATTGTATGCCATCGTGTCAGCGCTGCAGAGTAACCCCATCCACAGACTGAGGAAGACGTGGCAGGAGACGGACCGGGAGGCAATGAAGCGCTACGAGGAACTGGCCTCCATCTTCTCGGAGAAAGACAACTACTCGCAGAGCCGAGAGCTGCTCAAAGAAGAAGGCACTTCCAAATCTGCTAATGTAGACACTAAAACCAACAACAGAAGACACACGTCCAGTGCTCAGGGCACCGTGCCGTACCTGGGCATCTTCCTGACCGACCTCACCATGCTGGACGCCGCAGTCAAGGACAGGCTAGAGaatGGCTATATCAACTTTGACAAACGGCGACGAGAATTTGAGGTTCTCGCCAAAATCCGTCTCCTCCAGTCATCCTGCAGGAACAGCACCTTCCGAACAGACGAGTCGTTTGTGCACTGGTACCACAGCGTCCCCACGCTGACCGAGGAGGAAAGCTACAGACTGTCCAATCAGATTGAGCCTCAGGGGGAACCGAGTCCAGGACGTCTTACGCATCCTACCGTGGTCATCACGGAGTGTCCGGACACTCTCTCTGATGTGACAAGCTCGGGCATGGATGCTGATGGAATATTTGATTTCCCATCGCCTGTCAATCATCTGCTCTCCAGGCTTGCGAAGcacatGAAATCCCCTTCCGTTTCCTGTCTGGATGTCGAATCGTCCCCTCCACCCAATGACCCCAACCCCACTGCAGTGACCACACCTAATAATATCTCCAAAACCCATCGGCGCTCCGTCTCGTGCGGCAACGCTCCGTCCAATCACGCACCAGGGGCGGGGCCAGACATGCGAATCGTCAAGATCCGGATGGATTTACACGACGGGAATTTATATCGAAGCATTCTGgtTAGTAGCAATGACAAAAGTCCCACTGTGATCAGCTCGGCGTTAGAGAAGCATAACCAAGACCCCCGAGAGGCCTCCAAATATGAGCTCATACAACTGCTTCCTGAAGGAAAAGAGCTGACAATACCCGCCACAGGAAATGTGTTCTACGCCATGAGCTCAGCTAGCGTCGACTTCCTGTTGAGGAGGCGAGGAGGAAACACGCCGGTGGGCTCACCGTCGCTGAACAATGAGACCAGCGCAACTTTTCCACGAATCAAGGCCAAGGGGCGGAGGCTGAAGTTCAACTAAGACAGCGACGAGAACGAGAACGATGCCGATGCCACACTGCCGGTGTTACGGCTTTCTACCTCGAACGGAGCGATACCCTTTTTAGCTTCAGCTAATCCGTGAAAAAACACTGCATTATCAGCGATGATAAACGACTAGGAAACCACAACTGCAACTGCAACAACGACGTGTAGCACTTAAGGGTACTAATGCACATTAACGTCCTACAGTGCATTTACTTTAAGCAAAAAAACATACCAACAAAAAGATACAAACTCACTGCCACTTTGTAACCAAGTATGCAAACATGAGGCTCTGACTGAAGCTCGTGGCTATGCTCggatatttttttgtcattttacattttgaatacAGCAACCCACAACACTGTCCACTTTTACGATCTCATATCCAAGCAGCGATTAAGCTTTTGATCGTTTATAAAGGATGTTAGATGCACAGAGCACAAAGCTCACTGAGAAATGCAACactaagtaaataaatatatattttaatgtttgttagAAATGGAAACGTGTACAGCAAGGCACTGGTTCTAGCTTTAAGTCAAAGCTGGCTCTTGTGTTCTGATGAACCCTGCGCTGCTGATGTGCATTTGCTCCGAATGCTCTTGAAGTCTGGTCTGAACTGAAGCACTCGAGCTCTCGGCTCAGCGCAGGGCAGAGGAGCCgggtctggttttttttttttggttttttttgtcaggatgttttcagtttttgtggTGAAGTGCCTTTTTATCAGGTGCTCTCGCTTCTGCCGTGTTGCTCAGGATAAGCTAACGTTGTACATTCACCTCTGTATAGATAAAAGCTGGGTTTATGCAAAATGTATACCACCTATTCTTGTACGCaataaattttcattttgataCA

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385117 lncRNA downstream 10853 1724010 ~ 1724764 (-) True G324970
TU384971 lncRNA downstream 60710 1669102 ~ 1674907 (-) True LOC117595768
TU384972 lncRNA downstream 60710 1669102 ~ 1674907 (-) False LOC117595768
TU384975 lncRNA downstream 60710 1669102 ~ 1674907 (-) False LOC117595768
XR_004576939.1 lncRNA downstream 60718 1671701 ~ 1674899 (-) False LOC117595768
TU385155 lncRNA upstream 134305 1897711 ~ 1898181 (-) True G325003
TU385208 lncRNA upstream 143537 1906943 ~ 1948211 (-) True G325056
TU385210 lncRNA upstream 155865 1919271 ~ 1920472 (-) True G325058
TU385254 lncRNA upstream 256774 2020180 ~ 2020405 (-) True G325090
TU385304 lncRNA upstream 291777 2055183 ~ 2140101 (-) False LOC113532493
XM_026924728.2 mRNA downstream 17024 1714275 ~ 1718593 (-) True si:dkey-33i11.1
XM_034298233.1 mRNA downstream 27371 1686703 ~ 1708246 (-) False hpn
XM_026924699.2 mRNA downstream 27371 1686708 ~ 1708246 (-) True hpn
XM_026924811.2 mRNA downstream 67880 1650037 ~ 1667737 (-) True LOC113533022
XM_026923925.2 mRNA downstream 96998 1631443 ~ 1638619 (-) True LOC113532527
XM_026924079.2 mRNA upstream 189424 1952830 ~ 1976952 (-) False ntrk1
XM_026924078.2 mRNA upstream 189424 1952830 ~ 1976952 (-) True ntrk1
XM_026924695.2 mRNA upstream 246783 2010189 ~ 2011797 (-) True LOC113532949
XM_034297949.1 mRNA upstream 246783 2010189 ~ 2011739 (-) False LOC113532949
XM_026924301.1 mRNA upstream 504604 2268010 ~ 2272046 (-) True tmem176l.1
TU384835 other downstream 284901 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 364588 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 633500 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 1007983 726627 ~ 727634 (-) True G324579
TU384506 other downstream 1378996 350738 ~ 356621 (-) False slc4a7
TU385328 other upstream 324853 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 1474295 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 3200211 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 3200211 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 4066068 5829474 ~ 5978379 (-) False zfpm2a

Expression Profile