RNA id: XM_026924434.2


Basic Information

Item Value
RNA id XM_026924434.2
length 2384
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC113532798
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3365121 ~ 3422994 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCTGGGATTTAGTGAGTTTAACTCCCCCCAGTTCCAGCAGAGAGAACAAGAAATTTTTCAGCACTTTAAGCACGAGAAAGGGTggacgttaaaaaaaaaaaaatccaggctGCCCAAAGGGAAAGGACAATGTGATAACTGTAAAGCAGTGTTGCAAGATAGAGCTGAATTACATCTGTAACCATGACAAACTATACTACAGCAAATAGTACTACAGCACACTTTCTCCAGTGTGACTGACAgccacaaaggccacacctccttcagtgtgACTGATAGGCATACAGGCCACACTTTATTTACTGAATCTGACATGCACAGAGGCCATTACTTCTTCAGTGTGACTAAGTTCATAGGCTATACCTCTTTCACTAGGACAAATAGACataaaggccacacctccttcactgggaatgATAGCCATAAAAGCCACACCTTCCTCAGTGTGACTGACACCCATAAAGggcacgcctccttcactgggactgatagGCATAAAGGCCACACTTCCTCCATTGTGACTGGCAGCCataaaggccacacctccttcactgggactgaatCTGACACGTACAGAGGCAATTACTCCTTCAGTGTGACTAATATGTACATAGGCtatacctccttcactgggactgccaggcacagaagccacacctccttcactgggactgccaggcacagaagccacatTTTCATGTTGGAATAATGTATAAAAGCCGGCTGTGAGGTTCTCCGCCTGTGCACTGTGAAGACTCAGATGACAGACAACATCATCACCTATTTGGTCTGCTCAGATCCGGTGATCCTGTTCCTGTGGTTCTGAAAAAACATATGCGAGACAGAACTAAGACCTTTGGCACAATGTTTCTCTGGAGTCTGTGTGTGCTCGCTCTGCTTCATATGAGCTCTTCCTGCAGTGTGCCAGATCAGATCTGTACAAGCCTGAAGGCAGTGCAGGATGAAATCGTCAACATTCACAACGTGTTTCGGAGAGAAGTCGTTCCAACTGCCAGCAACATGCTTAAGATGAACTGGAGCGAGGAGGTGGCCGTATCGGCTCAGAACTGGGCGAACACCTGTGCAATGGCGCACGGCCCGTCCAGCAGCCGCATGCTCGGAACATATGAAATGGGTGAAAACCTTTTAAGAAGCTCTAAACTGATACCATGGACTAACGTCGTGACAGCATGGCACAATGAAGTGGCCAATTACAACTATCCCACAGGGTCCGCCAATGGGAAACCCATCGGCCACTACACACAgGTGATCTGGTTCAGCTCATATGAGGTCGGCTGCGGTGTGGCGAAGTGTGGGAGCGACTATTTCTACGACTGCCAGTACTATCGAGCAGGGAATTACAAAGGTGTGCCACCGTACTCGCTAGGAGAACCCTGCTCGGCATGTCCGCAAGCTTGCGACAACAAACTATGCACCAATCCTTGCCCTTACATCAACACGTACGCCAATTGCCCTGACTTGAAAAAAGATGGCCCGTGTAGCGACTACCTCAAACAGTGGTGCCCAGCTCATTGCTTCTGTACCACTGAGATCATTCCTGCTAACTAGAAAGAGAAGACAGGAACTGCTGGGATTATCTAGGCTGCATtgcaaaactgtttttaactCGCAGACTTCCCCTTGTCATTTTTTCTGAAGCAATCGAAATGTTTCTGTACTTTATTTGCTGTAGTGAAGTGAATATAACTGGACTTCAGGAGCGCAACTTAAGCCGGTTTTAGACTttagatgatcccaataaatcttggctgaattctataacagactgtgtgaaaACATGTTCTccatgaagatcctctaacgatagatctacgattaaagaaaaataactacGTTGTCTGCTTACTTCATCAATCAGCGTGATCCGGAAATCACCTCATGCAGAAAACCGGCTCGCATAAGCACACGTATTCTTCGAATAGGTGTTAGCTTGATATCCTAATAAGgacatgtttttgttcattagcATGTTTATGTTTCGCCATCGCCATTAcgatatttgtagctgtccgaTGCTTCATCCTAtgctgtcctcctattggtggattttagatgagcATCGTAGCATGAGATACACTGAAATACCAACTCATTATACACTCATATTGTTGCTGCAAGTGACTactcatgtggaaaaaaaagttaatatatGCTTCTAAGTTGTGAGGAGAAGTTGCAAGGgtgtttttaaaactgtattgGAATGCAGGTTTGGTGTTCCCAACATGATTTAAAGACATGCTTTTAAAAAGACACATGAGCATGTCTTTAAATACGCTACATTTTTCTGTCACGTCTGAAACATTACCACGCAAATGTTTGTGTTGCGCCATAGAGAATTGCtgcacaaattatttttaa

Function

GO: NA

KEGG:

id description
K19919 CRISP1_2_3; cysteine-rich secretory protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386119 lncRNA upstream 42791 3319917 ~ 3322330 (+) True G325815
TU386041 lncRNA upstream 104940 3258929 ~ 3260181 (+) True G325754
TU386009 lncRNA upstream 156159 3139312 ~ 3208962 (+) True G325730
TU385973 lncRNA upstream 293048 3071849 ~ 3072073 (+) True G325697
TU385717 lncRNA upstream 717538 2644041 ~ 2647583 (+) True G325462
TU386344 lncRNA downstream 278340 3701334 ~ 3702153 (+) True G326023
TU386457 lncRNA downstream 457683 3880677 ~ 3880941 (+) True G326131
TU386508 lncRNA downstream 522388 3945382 ~ 3946133 (+) True G326178
TU386524 lncRNA downstream 544538 3967532 ~ 3973002 (+) True G326193
TU386648 lncRNA downstream 896221 4319215 ~ 4359118 (+) True G326288
XM_026924044.2 mRNA upstream 54303 3305106 ~ 3310818 (+) True LOC113532606
XM_026924045.2 mRNA upstream 61077 3301555 ~ 3304044 (+) True LOC113532608
XM_026924341.2 mRNA upstream 70089 3279997 ~ 3295032 (+) True brd2b
XM_026924708.2 mRNA upstream 86674 3265671 ~ 3278447 (+) True tap1
XM_026924247.2 mRNA downstream 2581 3425575 ~ 3470212 (+) True LOC113532711
XM_026924357.2 mRNA downstream 291022 3714016 ~ 3722769 (+) True rab5ab
XM_026924356.2 mRNA downstream 291022 3714016 ~ 3722769 (+) False rab5ab
XM_026924761.2 mRNA downstream 426068 3849062 ~ 3878524 (+) True ube2e2
XM_026924488.2 mRNA downstream 458977 3881971 ~ 3891903 (+) True nr1d2a
TU385671 other upstream 795382 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 1150822 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 1150860 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 1220610 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 2201507 1118268 ~ 1163614 (+) True G324258
TU386582 other downstream 588416 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 1497986 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 1501792 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 1909274 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 4478798 7901792 ~ 7902608 (+) False LOC113532663

Expression Profile