RNA id: TCONS_00008812


Basic Information

Item Value
RNA id TCONS_00008812
length 2345
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id XLOC_004211
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31200219 ~ 31202839 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCATATACTTTATTCGGGAACCATTTGGATTTATCAAGACGCCAAAATAAAGCCAAAAGTCTTATATAATACAAATGCTTACAAAAACTAATGACACGGGCATTAGAACTGGACTGAAATGCAGTCATTCATGTAGGCAGCAAATTTATTTCCTCTACAACTGAAAGAACATCAAACGAGTACCGAATTTCCCTAAAAGGACATGAAAGAGGTCATTCATTTTCATCCCTTGTTCCACTTTTTGATGGCAGACGTTGTATTTGACTTTTTAAGGCTCACAACGAAAATCTTATGCTCGGAGTTGCTAGGATACGTTATTGTattataaaatgacaataaacaatACTGAAATGAGTCGAGTTCAGCTAAAGCTGAAAGAGAGGAAAGCGTTGGTTTTGAACAATACATTCACCCACGGGCACCTGGAGTCCTTATACACTCAGATCTCAGAAAAACTCATTGGCACAGAGGATATGAGTACAAAATGTTCGTTAGCACACGATATTAGATCCGAGTTCTGGAGCACAAATATGAAGTAACAATCATAACTGAAGCTTTTGATTAGCTCTTTAGGGGATGCTGTCAGTTAGTGGGGGAGTTTACTTAAGAATGAAACTAAATTGCTGTTCATTTACCTTCCAGCTAGTCACACctattacattttgttttgtctgtgtgcttttttgactattaaaagtgctgatatttgaaaatgtcattttatgaatcaccaaaaaatgaaatcatcagcttaaaatctttttaaatgtaaaatgtgagtaaatcaaAAGCAAAGATCCATTTTTTGGTGAGCCTCTCCCCCTTAAAATAAAATGCGACTTCCAGAACATGCATGTTGCTGCTTTTACTGCATTTAAAAGACCAGTTAATTAGTGAAAATAGTAAAATGATGGAGAAGTATGGAATATCATTGTGACTTAATCCATCAAAATGCACAGTGTGTCCAAATGACTCTATACAAATCCGCCGCAATAACAATATACAGTAATCTTAAAAGCAATGCATAAAATCTGattttaaaatgagtaaaaatcCCAATACTTACAAGCAGATCTATGAAAATTGTCAGTGTGAGCAAATTTGACCATTTTTTGCAACCAATTATCCACGAGTTGACTCAAATGATGAGATTCATCCATGAATAAAAGAGCAAATGATAATTTAAAAAGTTCATGATTTAATTTCCATCAGATAgaaaaggcatagttcacccaaaatggaaaattctgtcatctttttaCTCACCTTTCATGTTCCAAACCCgtttgaacaaaaaaaagaagaggttttgaaaaatgttggaaacctgtaaccattaattttcatagtatttgtttttcctttttacccatttctaacattttttaaaatctctctTTTGGTACAACATAAAGAAATAACTCTTTGATTGTGATGGTGAGTAAATTTGAGTCAGTtcacacagaaaataaaaatgacctcATCTACATTTATTCTCCCtcgtattttttttaaaatgagagtttattattttctattgaacacaaaagaagatatttaaatgtattattattaaagatattaTAAACCAACATTCATAATAATGTTAGTTGCTGGGactcattaacttccatagtatgaaaaaaacaattactattgaagtcaatggttataggtttccaacatttttcaaaatatatcctcaaaaaagttttaaacaagtgaagtgtgagtaaataatgccaagaatgttcatttttgtgtgagctatccctttaacttGGGTATGGCCAGCTGGAAATCTAGAGGGCGCTATAAGCCAGCATTCACTCTGatatgggggaaaaaaagagaacattctgttgtttactcacctttcacttaTTTCAAACTTGTGTTAATTGATATTTTTctataaacacaaaagaagagattttgaaaaatgttggaaacctgtaactattgactttcataatatttatttttcctatgaaggtaattttaaatgtttacccatttctaacattcttcaaaaccaGTTTTttggttcaacagaaaaaagtaaCTCTTTGAGGGTGAGGCTGAGTACATTTTAACTTTGTTCACCCAAATAATAAAATGACCTCTTCTACATtcattctccctcatgtggttttaaatgagagttaattattttttttattaaacacaaaagaagatatttaaacatattattatttgAGATATTATAAACCAACATTTATAAGTATGTTTGTTGTTGGgacttattgacttccatagtatgaaaaaaatacaatggaaatcaatggttacagaaaaaagtaaCTCTTTAAAGgtgatggtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008053 lncRNA downstream 835414 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008040 lncRNA downstream 1238318 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008036 lncRNA downstream 1279217 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008027 lncRNA downstream 1438208 29760108 ~ 29762011 (-) True XLOC_004194
TCONS_00008025 lncRNA downstream 1462972 29734578 ~ 29737247 (-) True XLOC_004193
TCONS_00008813 lncRNA upstream 2086 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008814 lncRNA upstream 947379 32150218 ~ 32157526 (-) False XLOC_004216
TCONS_00008815 lncRNA upstream 952115 32154954 ~ 32156318 (-) True XLOC_004216
TCONS_00008816 lncRNA upstream 1163073 32365912 ~ 32391388 (-) True XLOC_004217
TCONS_00008817 lncRNA upstream 1254477 32457316 ~ 32563702 (-) False XLOC_004218
TCONS_00008066 mRNA downstream 27943 31168697 ~ 31172276 (-) False XLOC_004210
TCONS_00008065 mRNA downstream 53411 31144720 ~ 31146808 (-) True XLOC_004209
TCONS_00008064 mRNA downstream 160686 31038409 ~ 31039533 (-) True XLOC_004208
TCONS_00008063 mRNA downstream 564056 30630905 ~ 30636163 (-) True XLOC_004207
TCONS_00008061 mRNA downstream 565933 30626768 ~ 30634286 (-) False XLOC_004207
TCONS_00008068 mRNA upstream 16117 31218956 ~ 31234584 (-) False XLOC_004213
TCONS_00008069 mRNA upstream 17787 31220626 ~ 31226578 (-) True XLOC_004213
TCONS_00008070 mRNA upstream 55277 31258116 ~ 31276080 (-) False XLOC_004214
TCONS_00008071 mRNA upstream 69810 31272649 ~ 31276064 (-) True XLOC_004214
TCONS_00008072 mRNA upstream 666181 31869020 ~ 31872628 (-) True XLOC_004215
TCONS_00008067 other downstream 27965 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 691428 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 835395 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 1044384 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008043 other downstream 1098962 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008075 other upstream 1528326 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008078 other upstream 2168412 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 2763319 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 3152705 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 3263556 34466395 ~ 34466513 (-) True XLOC_004247

Expression Profile

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