RNA id: XM_026924442.2


Basic Information

Item Value
RNA id XM_026924442.2
length 1680
RNA type mRNA
GC content 0.41
exon number 3
gene id si:dkey-152b24.7
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2335473 ~ 2339983 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGCCGCCGCCATAGCCGGCAAAGATGAAGAAAACGAATGTCGACCAAATCCTGTGTGTGTCATTACTTATTCTGCTGCTTCCTGCAAAGATGGAAAGTCACAGTCCGGCTTTCAACGATAAGGAGCAGCTCATCCTTCCCGAGTCCTACAATATCGGCTGGATGATGGAGCTGGATGGTGACACTCTCCTGTCTGATATCACCATTCCTGGAACGCATGACACCATGGCACTTTATGGAGGACCCGCAGCTGAGTGCCAGGCCTGGAACCTGGAGGACCAGCTGAAGGCAGGTATCCGCTACCTGGACCTCCGAGTGTACGCTTTCGAAAACACGCTGTACCTCATGCACGGGATCGTTTACGAGCACTCGACATTCACCAAGGCTCTCGACACACTCAAGGTGTTCCTGTCGGAGTTCCCAAGCGAGACGGTTCTCGCCCGAGTCAAGCCCGATTTGTTTGATAAGAGTAAAGTTCAAGAATTGGTTGAAAAGCTCATCGAGGGCGATAGCAGTGTCTGGGTGAAGTCTACCATACCACGACTGGATGAAGTAAGAGGCAAGATTGTGTTTGTACAAGAAGACAGCTTTATGCTTGGCGTGCCTCTGCTGGAAACCGACACCAAGGGGGACTACAAGGTCGTTCATGTTAATGACAAGGAGAAAGAAATCTCTCAGCACCTCAATCTAGCCATGAACGAGTGCGGAGGAAATTCTCTCATCCTCACCTATTCCAGTGGCACAGGCATCGGCACGTTTGAAGGCATGTTTCTAACACCGAAAAGGGTGGCTGAAAAGATCGACCCTTGGCTGTATGATTATCTGCAAATGCTGCTTGCTGAGGGGTCTACACCGTGTTTCGGGATCATAGCCATGGACTTTCCAAGCTTTGACCTCATACAAACGGTCATCAAGTTTAATAACTAGCTTTGCAGGGTTGCTTCAAATTCTAATCAAACTTAATGGTTAATGTTTTCATGGTTTGCAAATTTCTACATCAGGATCCAATTATccttttatttctataatagcTAATGAAGACATTTCTTGCATGCATTTTACATAATAACATCAATCTCTTTCTAAATAAGTCTGTTAATCCTGTCTTACCTCTGTGGCACCTACTGGAGTGTTATTTTTTCAACCTGTTTAACTGTGATTGTAAATGTGATTGTATTGCATTCTGAAAATAATAGCAGTAAAATGACTTTTGCTGTTGCTTTTGTATGTCGTTATTTCTCCTGGAGCTATTAATCTAGTACAAGTAGCCAGTGAAATGTCAAGTATAATTCAATGATGTATAAAGCTTAGAGTAATACAATGAATtacaaataaagagaaaatatcaggtttgatttagtttacccCAACATGTTAATTAATAGATTAACTAACACACATGTACTAACATGTAATTAAGGTGATCGTAATTCACGCAGGAATTCATAAGATTAACGTCGTAGTTATGTTTAGCTCTGTTAATGATTAGTACCTTACCTCATCATTAGTTTATATTTAAGTAGGTATTAATTCAGGGATTAAtgcatgattatttatatactgtTATTATAATAGTACTCTCAATTACTGAGtattttgagtgtgtgtttcactggGTCTCATATGTGACTGTCAGATGCTTTGTGAATCATGAGACAATGGCataagaaataaacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385591 lncRNA downstream 822 2334452 ~ 2334651 (-) True G325356
TU385586 lncRNA downstream 1716 2315132 ~ 2333757 (-) True G325351
TU385539 lncRNA downstream 80095 2252148 ~ 2255378 (-) True G325311
TU385540 lncRNA downstream 97397 2215483 ~ 2238076 (-) True LOC113533076
XR_003403392.2 lncRNA downstream 97710 2215470 ~ 2237763 (-) False LOC113533076
TU385576 lncRNA upstream 8361 2348305 ~ 2349582 (-) False G325343
TU385578 lncRNA upstream 8361 2348305 ~ 2372802 (-) True G325343
TU385602 lncRNA upstream 47365 2387309 ~ 2387558 (-) True G325366
TU385609 lncRNA upstream 60373 2400317 ~ 2400590 (-) True G325373
TU385878 lncRNA upstream 257335 2597279 ~ 2598579 (-) True G325616
XM_026924301.1 mRNA downstream 63427 2268010 ~ 2272046 (-) True tmem176l.1
XM_026924695.2 mRNA downstream 323676 2010189 ~ 2011797 (-) True LOC113532949
XM_034297949.1 mRNA downstream 323734 2010189 ~ 2011739 (-) False LOC113532949
XM_026924079.2 mRNA downstream 358521 1952830 ~ 1976952 (-) False ntrk1
XM_026923950.2 mRNA upstream 37534 2377478 ~ 2384403 (-) True mex3a
XM_026924671.2 mRNA upstream 65726 2405670 ~ 2409342 (-) True LOC113532929
XM_026924684.2 mRNA upstream 71857 2411801 ~ 2416406 (-) True zmp:0000000881
XM_026924627.2 mRNA upstream 229047 2568991 ~ 2581023 (-) True mios
XM_026924626.2 mRNA upstream 229047 2568991 ~ 2579474 (-) False mios
TU385328 other downstream 238038 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 884757 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 964444 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 1233356 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 1607839 726627 ~ 727634 (-) True G324579
TU386070 other upstream 897757 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 2623673 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 2623673 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 3489530 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 3536152 5876096 ~ 5978268 (-) False zfpm2a

Expression Profile