RNA id: XM_026924445.2


Basic Information

Item Value
RNA id XM_026924445.2
length 1993
RNA type mRNA
GC content 0.50
exon number 9
gene id pbx2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3240442 ~ 3251360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcttgtgtgtactcctgctgccacacacacacacacacacacacacacacacagctggctcGGTTTAGATTAATGTGACGCTCGGTATGTTGCAGCAGCAGCCTATTACAGGCAACGGGCCCAACTCAGGCCGGGGGCTCGCGTTGAACACTCACCCGGGAATGCACACCCTGAACTCGGTGCACCCTCCGCCACAACACCGGCCCGATGGCGACGCGGGCCTCGAGGGAACAGAAAACGGTCATGAAAACAGACGAGACATTGGGGACATTTTGCAACAAATCATGACCATCACTGACCAAAGTCTAGACGAAGCCCAGGCGAAAAAACATGCCTTGAACTGTCACCGAATGAAACCGGCTTTGTTCAGCGTGCTTTGTGAAATTAAAGAGAAAACCGGTCTGTCCATGCGAAACACGCAGGAGGAGGAGCCGCCGGACCCGCAGCTCGTCCGACTGGACAACATGCTCCTGGCTGAGGGTGTGGCCGGTCCGGAGAAAGGAGGCGGGGCCGCCGCAGCAGTCTCTGCGGCAACCAGCTCGGGCGGTATGTCTCCGGACAGCTCGTTGGAGCACTCGGACTACAAACAGAAGCTGAGCCAGATTCGCACGATTTACCACACTGAGCTGGAGAAATACGAGCAGGCATGCAGCGAGTTCACAACTCATGTGATGAACCTGCTACGTGAACAGTCACGTACACGGCCCGTGTCTCCGCGCGAGATCGAGCGCATGGTGGCCATCATCCACCGTAAGTTCAGCTCCATCCAGACGCAGCTCAAACAGAGCACGTGCGAGGCTGTCATGATCCTCCGCTCCCGCTTCCTGGacgccagGCGCAAGAGACGCAACTTCAGCAAGCAGGCCACGGAGGTGCTGAACGAGTACTTCTACTCCCACCTGTCTAACCCTTATCCCAGCGAGGAGGCCAAAGAGGAGCTCGCTAAACAGTGCAGCATCACCATCTCTCAGGTGTCCAACTGGTTTGGCAATAAGAGGATCCGCTACAAGAAAAACATCAGCAAGTTCCAGGAAGAGGCCAACCTTTACGCCATGAAGACGGCCATGGGGgcgacacagagagagggatcGCCCCAAACCCCCAACTCCACCGGGTCAGCTGATCTCTTCCTTGGAGTTCCTCCAGTGAATGGAGAGCAGCCTGGCTACCACATGGGGGCTCAGGACTCGCGCTTTTCAGAAAGACTCTATAGTCCCAGAGAGAGCCGGactaaCGGGACCTGGCAGGAACAGAACACTCCTCCCTCTCCACCTGGAAGCGAGGGCTCCGACAATTCAGACTGATGGCCGCCGCTGTTCCCCGATGCGTCCGAGAGACGAGGacaaaggagaaaatggaaagaacGATGGTCACTCTTCTGCCAAAGTGcagtgtttttagttttgcttttttttttttttttaaaaaaaaaaaaaaagaagtcaataTCTGGGACGTGTGTGCACGAGAGAAACGGAGGAAATGGCTTTTATTTAGGCTTATGTACTCAGCCGTTTGATTTTATGTTTggtttatagtttttttttttttctccccatcaCTACTTCCACTACTTGTTACTGCAATATTTGGGTTCTGAAGAAGGAGGGGAAACTTTGTAAGCTGCATTAAGTCTGCTTTTCTTTATAACTATAGTACTattgttactgttatcactGCTATTCTAACCCTATATtgtttcttttgaagctcagaTAGAGATGAATTGGCATGGCTAAAAGGGGCAATAGAGAATAATCCAAAGATCGTTTtgtcttctgttttgttttttgcgtgtgtgtatttctctttttttttttttactgtgtgtacCTGTTTTACCTGTTTTCTGAATGGGGTGCGTTTGCCGTCTTTATTTACGGTTTGAATGCGTATATCAACAGtgctgtctttctctgtacAGTGAAACACCTGTATTCTCTACCTCTTTTACAATAAAGACTGTCTGTGTACACATTCAGCTACACTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386009 lncRNA upstream 31483 3139312 ~ 3208962 (+) True G325730
TU385973 lncRNA upstream 168372 3071849 ~ 3072073 (+) True G325697
TU385717 lncRNA upstream 592862 2644041 ~ 2647583 (+) True G325462
TU385672 lncRNA upstream 670706 2567979 ~ 2569739 (+) True G325435
TU385486 lncRNA upstream 839761 2400470 ~ 2400684 (+) True G325271
TU386041 lncRNA downstream 7569 3258929 ~ 3260181 (+) True G325754
TU386119 lncRNA downstream 68557 3319917 ~ 3322330 (+) True G325815
TU386344 lncRNA downstream 449974 3701334 ~ 3702153 (+) True G326023
TU386457 lncRNA downstream 629317 3880677 ~ 3880941 (+) True G326131
TU386508 lncRNA downstream 694022 3945382 ~ 3946133 (+) True G326178
XM_034297894.1 mRNA upstream 583531 2646781 ~ 2656914 (+) True slc25a32b
XM_034297895.1 mRNA upstream 586069 2648485 ~ 2654376 (+) False slc25a32b
XM_026924423.2 mRNA upstream 633409 2583219 ~ 2607036 (+) True col28a1b
XM_026924042.2 mRNA upstream 677364 2554120 ~ 2563081 (+) True ica1
XM_026924709.2 mRNA downstream 13923 3265283 ~ 3278447 (+) False tap1
XM_026924710.2 mRNA downstream 13923 3265283 ~ 3278447 (+) False tap1
XM_026924708.2 mRNA downstream 14311 3265671 ~ 3278447 (+) True tap1
XM_026924711.2 mRNA downstream 14311 3265671 ~ 3278447 (+) False tap1
XM_034298260.1 mRNA downstream 14311 3265671 ~ 3278447 (+) False tap1
TU385671 other upstream 670706 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 1026146 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 1026184 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 1095934 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 2076831 1118268 ~ 1163614 (+) True G324258
TU386582 other downstream 760050 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 1669620 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 1673426 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 2080908 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 4650432 7901792 ~ 7902608 (+) False LOC113532663

Expression Profile