RNA id: XM_026924475.2


Basic Information

Item Value
RNA id XM_026924475.2
length 3826
RNA type mRNA
GC content 0.45
exon number 26
gene id ptpn3
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7971618 ~ 8009770 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtaagtgtaagtaaCTCTGAGCGCACGCGAGGCAGGTCAGATATCAATGAAtcgagcgcgcgcgcgcgcgccgtGACGACTACACCGACTCCACTCCCGAAGGAAGCCGTAAAAAAACAGACCCAGCGCTTTCCGGAAGTTTACCAACACCTGCGACGACGCTTGTAGAAACATGGAAACAGTTGGCTTTTCGCGGAGGGTGTCGATACAGCACAAAGCAGAGTGAGGAAGCGGACTTCAGACAATACTCAGGTCTGTTTGAGTGTAGAAGATGACTTCGCCATGGTGTACACTTGGAAACAAAATCACCTCTCTGGGTCTGGTTGACCTCTCCAAGCGCACACATATGTCAAACTCTGGCATATCTTGTGTAGTGATATTCCCtgacagcacaacacacactttcacagtcAGTAAACATGATGCTGGGCTTTTGTTATTCGACCTTGCTTTTGAACACCTGGGCATAATAGAGAAGCAGTACTTCGGTCTCCAGATCACTGAAGACACCTCTAGTTCACCTAGGTGGCTGGATCCCAGCAAACCTTTCAAAAAGCAGCTTAAAGGTTCTGCCCCATTCTATTTAATATTTCGAGTGCGATTCTTCATCTCTGACCCTAACTCTCTTCAGCATGAACagaccaggcacttttattttttgcaaattaaGAAAGACATTCGGGAGGGCAGGTTAAAGTGTCCACTAAGCTCTGCTGTGGTGCTGGCATCCTATGCTGTTCAGTCTGAATTTGGAGACCATGTTCCTGAAACCCCTCCTGGATATCTTGGCCATGTCCACTTTATTCCTGATCAGGACAAGGACTTCCTTTTTAAAGTGGAGTCATTGCATCCTCAGCACAAAGGCCTGTCTCAGAGTGAGGCAGAGTTGTGTTATCTGAACACAGCTAGAACCTTAGATCTCTATGGAGTAGAGCTTCATAGTGCACGGGATGCTAGTAACCCATCTCTCTGGGTTGGGATTGCATCAGGAGGTGTGGCTATGTTTTGCAATATGGTTTGTTCCAATTTCTTTCCTTGGATCAATATAATCAAGATTTCATTCAAAAGAAAGAGATTCTTCATCCACCTTCGGCAGAAGCATGGGGAGGTTGGACAACAAGTGGTGTCCCTGTCCATGCCCAGCTCTCGTTCCTGTAAAAACCTTTGGCGATCCTGCGTGGACCATCACACATTCTACAACAGAAAAAACTCTCATGCAGTCTCCAAAACTAGGTCTGTCCCTCTGTATCGGAAACTAGTAGGTGAGGTGATGTGGAATCCTTTAATAAAGTCTCTTTCCACTGAACATCTGGAAACCAAAAGTCTCCCCTCAAGATCTCCGCCCAGTACACCTAACTGGCGCAGCCCTCGTTTGCGTCATGATTTTCGTAAGCCACGTCCATCTTCTGTAGACAATCTTACCAACGACATGAGTTATGTGACTGAGAGTGAAGATGTGTTCTATACTTACAGGAAAGCTCAGGAAGATGAGAAGCCCAGCAGTGTCCAGTCCCCACTTGACGACAACACTTTGGATGAGGAAGACTGGCAAAGTCTCTGGGATAAGGATATGGCAGCTGATGGGGAGCTACTGCTAATCAGAATCAGCCCTGACAAAGATGGCAAGTTTGGATTCAATGTCAAAGGAGGTGTGGATCAGAAGATGCCATTGGCAATCTCTCATGTAAACCCTAATTCTCCGGCTGGTCGCTGTGTGCCTGCATTGCTGGAGGGAGATCAAGTGCTTTTGATAAATGGGCGTGACATTTCAGAGCACACACATCAACAAGTGGTCATGTTCATCAAAGCCAGCAGAGAGTCCCACAGCAAGGAGCTTGCCCTACTTGTACGCAGAAAAGgcaTCTCTTTGCGAGCTGAAAACCCACTACAATTTCCAGGCAGTTTTAACCTACAGGAAGAAATTCCTCCATCTCCTGGTCACCCATCTGGAGAGACACTGCAAGAGTCGATGTCCCGTCTGGAAAGGGGACTGACTTCTGGCACTTTGCTCATGCAATTTGAGAAGTTATACAGGAAGAAAGCAGGACTGTTAACGTCTTGTGCAAAGCTGTCTGAGAACATGGAAAAGAATCGGTACAAAGATGTATTACCGTATGACATCACCAGGGTGGTGTTACAGACGGAGGAGGATAATTACATCAATGCAAGTCATGTGAAGactgaGCCAGCAGGTACCACCTTACAGTATATGGCAGGACAGGGGCCATTGCCCCACACATGTACTCACTTCTGGAGGAGTGTATGGGAGCAGGGAGTCAGTGTGATCATCATGCTGACCACACTGACTGAGAGAGGACGGACCAAATGCCACCAATACTGGCCTCATCCTCCTGAAGTGAAGGACTATGACTACCTTCAAGTGTGCTGTCATTCTGAAGAGTGTAACCTGGCCTATGTCACCAGAGAGCTAACGCTCACACATACTCAgctgggTGAACAGCGCTCCATCACGCACCTACAGTATGTGGCCTGGCCAGATCATGGGGTCCCAGATGAGGCTTCAGACTTCTTGGACTTTGTCCAGGCTGTGAGAAGCAAACGAAGGGACACTGAGCCACTTATGGTCCACTGCAGCGCTGGGATTGGACGGACAGGTGTGCTCATCACCATGGAGACGGCCCTGATCTTGATGGAGGGGGCACAACCAGTGTATCCTCTTGAGATTGTTGCTTCGCTGAGGGAGCAAAGAGCCATGATGGTCCAAACCTCGTGCCAATTCAGCTTTGTATGTCAAGCCATCCTGCATGTGTACCGAGAGAGATTCAAACACAGCCAAACTAGCAGCTGACAGGAGGAGGACAGGAGGAATGGATATGAATATAGATATCATAAAGAGATAAAAGCCAATTGGTTGTTAGGCATGATGGATGATAGGTTGTAAGAGGGAGATTTAACCATCTTCCATCAGATCGTCTGCTTTCACAGGGGCAGAGATAAGGACTGATGCAAAAGAAAAGCAgtaaaaagtaatgaaaaataattaatagaaaTAAGTATAGTAAAGAAAATTTGGGATCAGCTCAAATACACTATTGCATCTAACTGTTGTAGTGCTGCAGCTTCGATTTGCAGGTCACAGTTCCATCTGGATCTGTTGCATCACTGACATGGAATCAGCTCTCTCATTTTGGGGTGGGAggaattttgaaaatgaaattgttttCATAGGGTTTAAAGAATGTAAACTGACATATAAAAGAAATTATACACATCTTTAACAAGATTCAAAGTTTTAGTCCACTAGTTAAAGATAAGTATGCAGTAGTACTGCATAGGAGTCATCCAAGCACTTACTGACACTGATGCACTGCCATGCTGCTAATAACCAAACATTCCTCTCCACAAAATTTTACAGTCAAGAGACCAAAAACACAAGACTAATGGTGCTTTCAGAACTGtgtcttcattcattcattcattcattgattcattcactcATATTCTGTAACTGCATCATCCTGGTCGCAGTGTCGCAGGGGATCTGGAGCCTCTCGTGGGAACACTGTGCATGAGGTGGATGAGGTGCTTGTCCATCACTATACACATACGTTCACCCTTAAGGCAGTTTAGCCTAATCCATCCACCTTCTGGGAGGAGGGAAGAAACCGGacaacctggaggaaaccatgGACACAGGGAAAAGCTGCACCGAAACTTGTGTGGATCTTAAGAAGACAAAAAGCACTTTGCCACTTTTAGATCTGTATAATTCTATagaatacacacaaatacacagtctAAATAGAAATACTACTACAACAATCAATTATCgatttattaataaagaaagaaataaaatgtga

Function

GO: NA

KEGG:

id description
K18027 PTPN3, PTPH1; tyrosine-protein phosphatase non-receptor type 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389297 lncRNA upstream 312539 7657141 ~ 7659079 (+) True G328620
TU389095 lncRNA upstream 579170 7392241 ~ 7392448 (+) True G328441
TU389077 lncRNA upstream 598118 7373280 ~ 7373500 (+) True G328427
TU388944 lncRNA upstream 702856 7267734 ~ 7268762 (+) False G328313
TU389473 lncRNA downstream 95492 8105262 ~ 8105462 (+) True G328750
TU389477 lncRNA downstream 125310 8135080 ~ 8135455 (+) True G328754
TU389478 lncRNA downstream 125747 8135517 ~ 8136163 (+) True G328755
TU389722 lncRNA downstream 206676 8216446 ~ 8216654 (+) True G328944
TU389774 lncRNA downstream 247755 8257525 ~ 8264036 (+) True G328995
XM_026924146.2 mRNA upstream 47365 7905872 ~ 7924253 (+) True epb41b
XM_026924147.2 mRNA upstream 47365 7905872 ~ 7924253 (+) False epb41b
XM_026924148.2 mRNA upstream 47365 7905872 ~ 7924253 (+) False epb41b
XM_026924149.2 mRNA upstream 47365 7905872 ~ 7924253 (+) False epb41b
XM_034298015.1 mRNA upstream 69057 7901515 ~ 7902561 (+) True LOC113532663
XM_026924476.2 mRNA downstream 131 8009901 ~ 8045225 (+) True epb41l4b
XM_026924477.2 mRNA downstream 770 8010540 ~ 8045225 (+) False epb41l4b
XM_026924322.2 mRNA downstream 62697 8072467 ~ 8095509 (+) True virma
XM_026924323.2 mRNA downstream 62697 8072467 ~ 8095509 (+) False virma
XM_034298213.1 mRNA downstream 101643 8111413 ~ 8133575 (+) False rad54b
TU389428 other upstream 69010 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 2633367 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3041464 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 3047937 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 3958080 4011410 ~ 4013538 (+) False hamp
XR_004576973.1 other downstream 378417 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 605303 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 758975 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 758976 8768746 ~ 8819267 (+) False LOC113532648
TU390118 other downstream 843558 8853328 ~ 8856276 (+) False bmp6

Expression Profile