RNA id: XM_034298119.1


Basic Information

Item Value
RNA id XM_034298119.1
length 1503
RNA type mRNA
GC content 0.43
exon number 5
gene id pigm
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8252752 ~ 8264060 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAGCTTCACCAGGAAGTAAACGAGTTAACCTGCCCCTTGTTTCTGGTGTATCATTTAACTTGACTTAAAATTGAGTGAGATTTATTGAAAGTTTACTTAAACATGAATCGTGCATGTGGCTGACATGTTTAAGCGAAGATGAAGTGAGATTAATGGAGCTCGCACTGGATTGTGGATTTGGATTATCTGATTTACTAACAATCAGTGAATTGGGTTATGTCACGTGGTAACATGTTTTCATCCCAACTACTGAAGTTTGGGACGCTGTACAGCGTCGCATTTGTTATCCGTTTATGTTTGGTTGGCTTTGGGATTTATCAAGACAAAACCATGGTGGTTAAATACACTGATATCGACTATCATGTGTTTATAGACGCATCCAGACTTGTAACGCAGGTGAGTTCCTCTGTAGGAGAAATGACAGGGTGAGTCTCCATACAACAGGTCCACCTACCGGTATACACCACTCCTGGCGTGGATGTTATCACCTAGCATCTACTTGACCTCTCACTTTGGGAAGCTGCTCTTTGTGATTTGTGATGTACTCTCTGGTGTCCTCTTATACCGCATACTGACTCTTCGAGGTTTATCCAGTGATGCAGCCTGTCGTTTCTCAGCTCTCTGGCTTCTGAATCCTTTACCGATTGGTGTATCAACGCGTGGGAATGCTGAAGCACTGTTGGCTGTTCTGGTTCTGTCCACTCTCCTGTGTTTACAACTGAAGAGACATTTTACAGCAGCATGTCTCTATGGTCTCTCTGTCCATATGAAAATCTATACAGTAATATATGCCCTTCCCATCGCCCTCTTTATATCAAATCACAAGGAATTGAAGAAAAATTACAGAGGTGTTTTTAGGGTTATCCAAAACCTTTTCAGTAAGGACCTGGCTCTATTTGCTGTCGTTGCAGGAGCTGTGTTTCTTGGACTGACTTTGACTTTTTATTGCATGTATGGCTGGGATTTCCTCCAAGAAACCTACTTCTACCACTTAACAAGGCGGGACATTCGTCATAATTTCTCCCCATACTTCTACATGTTTTACTTAACAGTGGAGAGTGAATGGAGCTTTGCTCTGGGTCTAGTGACCTTTCTTCCCCAGGTTATACTCTTGCTCTTTACCTCTCTGGCCTTCTATGCTGACTTGCCTCTCTGCTGCTTCCTCAACACGGCCCTTTTTGTCAGCTTCAACAAAGTCTGCACCTCACAGTATTTTCTGTGGTACCTGTGTTTACTGCCTCTGGTCCTGCCACACCTGAGACTCACAGTAAAGCAAGGGATTGGGCTACTGCTGTTGTGGTTCACTGGCCAGGGCTTGTGGTTGGCACCTGCTTACTACTTGGAATTTGAAGGACGCAACACATTTGTGTTTATATGGTTTGCTGGCCTGCTGTTCCTCATCATCAACACAGTGATAATAGTCCAGATCATCAATAATTACGTACCAAAAAGAGCTgttcaacaaaaaaagaaaatgaaataaaggctggaatgaagatgaa

Function

GO: NA

KEGG:

id description
K05284 PIGM; GPI mannosyltransferase 1 subunit M

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU389718 lncRNA downstream 37498 8212756 ~ 8215254 (-) True G328942
TU389677 lncRNA downstream 118865 8133683 ~ 8133887 (-) True G328908
TU389620 lncRNA downstream 207155 8044983 ~ 8045597 (-) True G328864
TU389535 lncRNA downstream 348865 7903642 ~ 7903887 (-) True G328798
XR_003403393.2 lncRNA downstream 453367 7797200 ~ 7799385 (-) True LOC113533080
TU389830 lncRNA upstream 69771 8333831 ~ 8334176 (-) True G329039
TU389840 lncRNA upstream 87172 8351232 ~ 8351641 (-) True G329049
XR_004576942.1 lncRNA upstream 309084 8573144 ~ 8576124 (-) True LOC117595772
TU390020 lncRNA upstream 355167 8619227 ~ 8626449 (-) True G329211
TU390107 lncRNA upstream 486782 8750842 ~ 8751044 (-) True G329290
XM_026924028.2 mRNA downstream 72354 8167058 ~ 8180398 (-) False hus1
XM_026924029.2 mRNA downstream 72354 8167058 ~ 8180398 (-) True hus1
XM_034297941.1 mRNA downstream 88545 8158372 ~ 8164207 (-) False pdp1
XM_026924518.2 mRNA upstream 9880 8273940 ~ 8284720 (-) False fzd6
XM_026924517.2 mRNA upstream 9880 8273940 ~ 8284720 (-) True fzd6
XM_034298112.1 mRNA upstream 9880 8273940 ~ 8284311 (-) False fzd6
XM_026924035.2 mRNA upstream 44348 8308408 ~ 8322160 (-) True LOC113532599
XM_026924034.2 mRNA upstream 44348 8308408 ~ 8322153 (-) False LOC113532599
TU389089 other downstream 866446 7378780 ~ 7386306 (-) False sec61b
TU388974 other downstream 1190324 7056794 ~ 7062428 (-) True G328342
trnam-cau_47 other downstream 1822820 6429860 ~ 6429932 (-) True trnam-cau_47
XR_003403372.2 other downstream 2274373 5829474 ~ 5978379 (-) False zfpm2a
XR_003404173.1 other upstream 2020774 10284834 ~ 10284937 (-) True LOC113541360
TU391129 other upstream 2258672 10522732 ~ 10523263 (-) True G330185
XR_003404157.2 other upstream 2659066 10923126 ~ 10930775 (-) False ackr4b
TU391338 other upstream 2818208 11082268 ~ 11083151 (-) True G330379
TU392350 other upstream 4412521 12676581 ~ 12677933 (-) False LOC113541288

Expression Profile