Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026924479.2 |
| length | 923 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 3 |
| gene id | mrpl17 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 8265019 ~ 8268963 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02879 | RP-L17, MRPL17, rplQ; large subunit ribosomal protein L17 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU389774 | lncRNA | upstream | 983 | 8257525 ~ 8264036 (+) | True | G328995 |
| TU389722 | lncRNA | upstream | 48365 | 8216446 ~ 8216654 (+) | True | G328944 |
| TU389478 | lncRNA | upstream | 128856 | 8135517 ~ 8136163 (+) | True | G328755 |
| TU389477 | lncRNA | upstream | 129564 | 8135080 ~ 8135455 (+) | True | G328754 |
| TU389473 | lncRNA | upstream | 159557 | 8105262 ~ 8105462 (+) | True | G328750 |
| TU389833 | lncRNA | downstream | 67389 | 8336352 ~ 8336582 (+) | True | G329042 |
| TU389845 | lncRNA | downstream | 105991 | 8374954 ~ 8378734 (+) | False | osr2 |
| TU389908 | lncRNA | downstream | 383473 | 8652436 ~ 8665836 (+) | True | G329111 |
| TU389928 | lncRNA | downstream | 425440 | 8694403 ~ 8699160 (+) | True | G329126 |
| TU390105 | lncRNA | downstream | 479857 | 8748820 ~ 8749033 (+) | True | G329288 |
| XM_026924062.2 | mRNA | upstream | 14196 | 8218540 ~ 8250823 (+) | True | LOC113532619 |
| XM_026924063.2 | mRNA | upstream | 14196 | 8218540 ~ 8250823 (+) | False | LOC113532619 |
| XM_026924837.2 | mRNA | upstream | 50190 | 8196241 ~ 8214829 (+) | True | LOC113533036 |
| XM_026923985.2 | mRNA | upstream | 74760 | 8184092 ~ 8190259 (+) | True | LOC113532572 |
| XM_026924274.2 | mRNA | upstream | 108726 | 8140082 ~ 8156293 (+) | True | cdh17 |
| XM_026924756.2 | mRNA | downstream | 17280 | 8286243 ~ 8298470 (+) | True | pop1 |
| XM_034298207.1 | mRNA | downstream | 17280 | 8286243 ~ 8298470 (+) | False | pop1 |
| XM_026924643.2 | mRNA | downstream | 61688 | 8330651 ~ 8334727 (+) | True | LOC113532920 |
| XM_034297934.1 | mRNA | downstream | 61688 | 8330651 ~ 8334727 (+) | False | LOC113532920 |
| XM_026923923.2 | mRNA | downstream | 103722 | 8372685 ~ 8378896 (+) | False | osr2 |
| TU389428 | other | upstream | 362411 | 7901792 ~ 7902608 (+) | False | LOC113532663 |
| TU387482 | other | upstream | 2926768 | 5332268 ~ 5338251 (+) | True | G326997 |
| TU386814 | other | upstream | 3334865 | 4924786 ~ 4930154 (+) | True | srsf10a |
| TU386810 | other | upstream | 3341338 | 4920980 ~ 4923681 (+) | True | fabp10a |
| TU386582 | other | upstream | 4251481 | 4011410 ~ 4013538 (+) | False | hamp |
| XR_004576973.1 | other | downstream | 119224 | 8388187 ~ 8484833 (+) | False | LOC113532774 |
| TU389909 | other | downstream | 346110 | 8615073 ~ 8665836 (+) | False | G329111 |
| XR_004576949.1 | other | downstream | 499782 | 8768745 ~ 8815560 (+) | False | LOC113532648 |
| XR_004576948.1 | other | downstream | 499783 | 8768746 ~ 8819267 (+) | False | LOC113532648 |
| TU390118 | other | downstream | 584365 | 8853328 ~ 8856276 (+) | False | bmp6 |
