RNA id: XM_026924481.2


Basic Information

Item Value
RNA id XM_026924481.2
length 7420
RNA type mRNA
GC content 0.46
exon number 12
gene id otud7b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2021415 ~ 2055739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cggGGATGCTGAGTTTTTCTCAGATGGGGCGGATTTCGTAGTGCCTCGGTtgacattgttgttgttgtgggaGTCGGAATGTAGTTTATAGCAAAGCGTCAGGTCCAAGGGGAAAGTGTAAGTGTGAGGTTCGGATTAACACGAAGGAGAAGGAACGAGTTTCAGTACAGACTGGTTAACACATTCGCTGGAAGGGAGAACTGGGATGGGACCGTGAGGAGGAGATTTCTTCTGCGAGGCCGAGCTGAAGgtgtTGCTGTAGCGGTGTTGATCGTGGGCTGTAGGAGAGTCTCTCTCCTGTTCGTTTCCGCTGCCCTGATGTTCCCCTGCAGCGCCGTCGCTTCATGATCACATGACCCTGGATATGGACGCAGTCCTGTCCGACTTTGTCCGCTCTACAGGAGCCGAACCCGGACTGGCCAGAGACCTACTGGAGGGTAAGAACTGGGACCTGACAGCCGCCCTGAGCGATTTCGAGCAGCTGAGGCAGGTGCATGCTGGGAGTCTGTCCTACTCGTTTCCAGAGGAGAGGGAGCAGACGCTGACGGAGCACAAGGACATGACGAGAGTGGGACGGCCGCTGCTGCACCGGCAGGACGACGTGGTGCAAGCCACAGAGAAGCGTCTGTCTCGAGGAATCTCTCACGCCAGTTCCACCATCGTGTCTCTGGCTCGCTCTCACGTGTCCAGCGTAggaggtggtggtgttggtaCCGAGATGCTCCTGGACACCCCCGTCTGCACCTTCCAGCTGCCTGACCTCACCGTGTACCGCGACGATTTCCGCGGCTTCATCGAACGCGACCTCATCGAGCAGTCCATGATGGTGGCCCTCGAGCACGCAGGTCGACTAAACTGGTGGACCAAGCTGGGTTCAGGATGCCAGAGTCTGTTGCCCCTGGCTACCAGTGGAGATGGAAACTGCCTCCTTCATGCCGCTTCTCTGGGCATGTGGGGCTTCCACGATCGAGACCTGATGCTGCGGAAGTCTCTGTACGCCCTGATGGACCACGGCCAGGAGAGAGAGGCGCTGAAACGCAGGTGGAGGTGGCAGCAGACCATGCAGAACAAAGAGTCAGGGCTGGTGTACACTGAGGAGGAATGGCAGAAGGAATGGAATGAGCTGTTGAAGTTGGCCTCCAGTGAACCCAGGATACACTACAGCACAAATGGCACCAACGGTGCGGAGTCGCAGGAGGAACCGGTGTATGAGAGTCTGGAGGAGTTCCATGTGTTCGTTCTGGCTCATGTGCTCCGCAGACCGATAGTAGTGGTGGCTGACACCATGCTGAGAGACTCAGGAGGAGAGgCCTTCGCCCCGATCCCGTTTGGTGGGATTTATCTACCCCTGGAGGTCCAGGCTCACAAGTGTCACCGCTCGCCACTGGTCCTGGCCTACGACCAGGCGCATTTCTCCGCCCTGGTTTCCATGGAGCAGAAGGATGGTTCCAAAGAGCAAGTGGTGATTCCTCTGACTGACTCGGATTATAAGATGCTTCCTGTGCACTTTGCTGTGGATCCAGGCAAGGACTGGGAGTGGGGCAAAGACGACGTGGACAACGTGATGCTCGCCAGTGTTACTTTATCTCTGGAGGCGAAGCTCCACCTGCTGCACACCTACATGAACGTAACATGGCTTCCTCTGCCATGTGAGGTACAGCAAGCACCTCTGGCCCAGCCCGAGTCTCCGACTGCCTCAGCCGGCGAGGACGCCCGCACGCCCCCTGATTCTGGTGAATCCGATAAAGAGTCTGTGAGCAGCAGCTCCAATGGAAATGGGGACAGCAGTGCAACAGGCAGCAGCAGCGGAACGGCGGGTAAATCCTCCAGCTCCTCGAGTTCGTCCAGCAGCGGCTCAACCGGAACGATGGGTAAGGAGAAGAACAAGAAGGACAAAGAAAAGGACAAAGATAAAGATAAGAAGAGGGCTGACTCAGTGGCCAACAAGCTGGGCAGCTTTGGTAAGAGTTTGGGCAGCAAGCTGAAGAAGAACGTGGGTGGTTTAATGACAGGAAAAGCTGGGGCAGGTGGCTCTGGCAAGCCTGAAGGTGCGGAGAAGAAAAAGGGGTCCATTCGTGGACGCAAAGACAGCAAGGACGGCAAAGACGGCTCTCCCTCAGCCCATCCCGGCTCGGAGGACTCGGGCAAAGGCTCTCCATCCTCGCAGAACGGAAACAGCTCTTCTGAAGGCGACTCATACAAGTACAGCGCAGACGTAAAGGCGAGTCTGAGCATCCTGCGTGCAGCTATGCAGGGCGAAAGGCGATACATTTTTGCCGGCCTTCTGACTACTAGCGACCGGCAGCCGTACCAGGAAGAGATGATTCAGCGATACCTGGTGGATGCAGAGGAACGTTTCCGTGCAGAGCAGGAGCAGAAAAGGGAGGCTGAGCGCAAAGGGGTGATTAATGGAGCGCAACCCAAGAAAGAGCCATCGGAATCGGGTTTTCGAGGCTTTGACGGAAAAGAGGATGTGACAGAAGCGCCACATACCCATTATAACACCCTCAAATCACCCTCTTTTACCCCATCACTGTATACAGGAGTTGTGCCCATTCCCAGATCCAACTTCCTTGAGCACTCACCCACTCCGCTCCCCCAGCACCTTCACATCCCCGGCTACATGGACACCCGGCGCCAGCTAGCTGGAGGCTCACCATCCACCTATCCGGGCTTGCCGTCCTACGCCACCCTACCCCGCCACTGCCCCTTGAGCCAAGGTCCTGTCCATGCTCACGGGCATTACCACCCACCCGCCCCAGCCTGTGCAGCACCTTGCTTCTCTTCCTCTTACACCCATCAGCAGGATATACCCGACTTCCACAGTGAGTCGGTTGGTGGCGCGTATGCCAACGGCTTGCTATCAGGACTAGACAGCCGAGGTGGTCCGCCTCCAGTCAGGCACTATTCTCTGGGCAGCGCCGGCGGATTGGCGAGCCTGCAGTCAAGCCGGTGCCGAACACCGAGCTGCAACTATTACGGACACCCAGAAACCTGCAACTACTGCTCATACTGCTACAGGGAGGagctgaagagaagagaaactgACACGGCCATGCACAGGTTCTAAGGTGGCACCATGTTCAACTGGTACCCTGTAGTGCCGTCTTCTCCACGTGGGACTCAGCAGGTCTCAAGCAGGATCTCGCTGCAGAATTTCGATGGGCCTTCCCGTGCCGTTGTGAGGGGACTACACTTAGTCGACACTGAGGGGATGGGCGCAAAGTCAGGAGTCCATACCTCTGTTACTTTTGCAGTGGATTTTAGGTGGTAGATTTGTCGTCGGCGCCGTTGTGCCGTTCTTTCTTGCTATGTCGCAACACACCCTGATTGTGACAAGGGTGTCGAGgcagttttttttgtcctggGTGGCACAAACTTGTGCTGCATTGAATAAAGACATTACATGCAAGATATATAACATGAAGCACAACCAGAAGATGCACATTTGTACAGCTTCACATTTACAAGACATTCAGTGACTCTTGGAGGCATGTTGGCAAGGGATGAATATGGTTTAATGAGAATTTTGCCATAAGAAtctagagattttttttttttttttttttttttaaacccaaatCACCCAATGTTTTATCTCTGCCCCAAAGCCATGTCCTAACAAGATTCTTCTGACCATTTTGCTTGTCTGGTATCTCCAATCGATGGGGCAAAACTTTGACAGCCAAAGGTCTTACTGTATAGTAACTTGTAGGTGAAGGTGAAGAGCGAATCTAGCAGGTACAGAAAGCAGTTAACGTTGTGTCCAAGTCAGCAAGACACTTGTTTGAGATGCcgtattaatttatattaattaaagactCTAGTCTCAGAAAATGTTCATCCTGCTGTAATCATCTGCTGAAGTCTTTAGATATTGTAACCCTCAGCTAAAATACTCAAAGGtttgaggaatttttttttaatcctctgaAGTTAATCCGACCTGTAGGGTGAATAGAAATAGCAAGACGTGCTGTTTTCTTCCTCCAAATAATAAAAGGTGGGTCAGTGGACTTTTCTCTGCACAAAGTCAAGCACTTTTCTAATATCCTGACattgcatgtttttctttgctatgatgatgatgacgatgatgaagaCACCAGCCTGTTCTGTTCACCATCAGACAGTGTTTTGGCAAGACTCCGTGGAGGAGTTCAGCACTAATTTGACTCGACCTTGCTGTTTCCTAGTTGCCTTTTCAGTCTCGCGCCAGTCCTTTTCGAGATTAATGTTAATTTCTCAAAGCACTGCTAAAATATAGGTTTTGCAAGTAGGCATGTGTCGATAATCAACACACAGTATTGGCATGAACACTTCGGAATATCGCGAAACCCATTCATTGTTATCTCCTGAAATAAATTATTGTGTTTATATGGTTCCTTATTTCAAACAACATATTTAGAAGAAATTACATGAAAGTTTGAAAATCTagtaaaatactaaaatgtgaTAATGCTCCCTAAACCCTAATAATACATTAGTAaattatttggggaaaaaatcagcATATGCCTATTCACAAGGTCCACGATTCTCTGTACACTGAATACTGCTTTTACTACAAACCTGAGCGTAAAAAAAAATCGCCTCCCATTATTTGAAAGCGTTCTTATTTCACCTGCTGATTTCATTTTGTCGAATTGTTCTCGTTGGTCAGTGTGCCAGAGCTGAAGGTGTTCTCTGTAGTCAATCGCTGTAGTCGATGCAGAACACAAGAGCACCGTCACATTTCCGCATCATGCTCAGATCTCGTAACTGATTCACATGCTCATaactgggagaaaaaaacagccataACGAACGAGTGTACACCTTGTAGGATGGTTCCTTGGTATAATCCAgtgtattgtacagtgtgtaatgtaGTCCATTGGACTgcatttgcagaaaaaaaagctcaaaagTTAACACACTTAACCATTTCTATGAACTATGCTTTAGTGCTTTGAAAATTTGTGAACGGTGCTGCTGAAATTCTTGCGCTTGCTAGTCCGAGCGCCAGAACCTGAAAATGTTATCCTGCAGTGCTCTGCTAAATGCAATAATTCAATGTTCTGTTGACCAAAAACTGAGACACACTGTATCAGTACTGTTTTTGTGACCCCTTAAACTGGCAACTGGGTGTATGTTAATACACTGTGAACGTTTCTGATTGCAAGCTGAGGTACAGgaaggttttctttttctttaacgTCATTCACTGACTTGTCCAGTGGATGGCGCAGTTGTATAGTTCTTCAGTATTTTGTTAAACGGATGAGCAAAGACCAACAGtatcactaatcactaatcacagAGGACAGGATTTAATAAAAGTGTGACACATCTGATTACTAAACCGCTAACTAGGGATGCACCGATTTTCATCCAAGATACGTTTTGAAGACAAACAGTAATATGTTTAACATAGAACAACAGTGTTTGTCTCTGTAGTGTCTGTTAGTGTACatctaaatgattttttttttttaatttattaatcatataTCTTCTGTTCATTCAAACCCCATCCTTTAAGTGTTAATGATTGTAGACATGATGCCGGGTGTTTATGTGTCGTATCAGATTACAAGCTGAGTTTTTGTAGGTTTCAGATTTTTGCTTCCCAGCAAATTCTAGAAATTTCTCCACGCATCGTGGTTTTTCCCATAGTTCTCTACTAAATACAGAAATAACGTTGCCTACAGTCTTAGAAGCAagagttctttaagggttctttgcttCCTAATAGGGAAACACTCTTTTGTAGGATCAGAACCCTTAAGGGCTCTTAAAATTTTCAGACATATTTACATCTTTAAAAGCAGATATTAGGCttttcatttatcaaactggatgcgaaagaatttatttgtaaatcattagaaggagcatttacacaagaaatttggttcAGCCTACGTTTAGAAAATTTGACCCGTCAAatcgtataattgttgatgagTTACTTCGATTTTATATACGCATCACGCTGTCgagtttaatttatttcaattacgcagcagtttaatgaacattttgtcaGACTCAGTCGCGTcacataaattattttacagaaaataaataagactAGCTGTTCAATTAGGAATAATTCCCTATAAAAGGAACAAAagggttagtgtgtgtctggCATTACTAGAAGAGTTAAAACACGCCTAGGAGGCGCTCTTTCGCCATTTAGTTGCCATTTTGACGTTTTCaactctctgtgagctttgcctttttggagttttgtgggcgtggctaaatgtaaatcagctgtgccgtgAACACATTTTATGgctgactttttacatttatcgCCGAAAGTCAGTTACATTGACGACGAAAGCCAGTTTGTAAATCTAGCGGGAATTTTTAGTCCGGTTTGATGTATGAAAAGATTTACACACAACCGTACACAATGATAAATGAGtcccatgcttttatacattCTGCTCTCCCAAAAAAGTTACCACGTGCCACCTTGACCTTTTTCTATAGCACACTTTTACTcgttaaacatttaaattctaaaataatttgTTACTGCCTGGCCAACTAAAATTCACAGCTTGCTTCCATACTTTTTTCCTGGTGTATAGTTCAGAGTATTTATTGTTAGCTATGAAGTAAAACCTTACAATTAATTGCTGTGATTCTGATTATAGATTTCTTAAAGCACTATAGATcagataatttttttctaaaaaaatttttttttttcctccaaatccAGTCTAACACCAGGCGATTAAAGCTTCACTATCAGATTTGGTGCATccctatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatgtgtgtgagagagagagagagagagagagagagagagagtgagtataATGTCCTCTTTAAAGTATTACAGTTTAAATCCACAAACAGAACTCATcccaaaaaaaattcaactgagtgtttctgtttttcagtttctgttttttttttctttcctgtagCTAACATTTGTCTTTacagaacacaacacacaatcacaaacctttttttatattaaaaaaaacaaaaagacagtgGTTGTACAAATACGTTTGAGTTATTTTTGTAAAGTGAAAGcagttttacagtgtttttaacGATGAGAATGTATAGGGTTTGCGGGACACTGAGGAAGGCAAAGGGATGAAGAAGTCagtattcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagactttggGCTGACCACCAGGAGCCTCTTCAGCGCTCTGGGTTCTCTTGCAAACACTAATTTCTTCTAAAAGACCTAAAATGCTAtgatttgaaaatatatatatttataataagatttttttttttttctgaaggtgtttttttttttttttttttt

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11860 OTUD7A_B; OTU domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385253 lncRNA upstream 1027 2020184 ~ 2020388 (+) True G325089
TU385237 lncRNA upstream 9434 1993256 ~ 2011981 (+) False G325076
TU385235 lncRNA upstream 9434 2009334 ~ 2011981 (+) True G325076
XR_004576937.1 lncRNA upstream 20411 2000137 ~ 2001004 (+) True LOC117595767
TU385089 lncRNA upstream 89089 1927080 ~ 1932326 (+) True G324947
TU385460 lncRNA downstream 279140 2334879 ~ 2335106 (+) True G325247
TU385483 lncRNA downstream 340934 2396673 ~ 2396887 (+) True G325268
TU385486 lncRNA downstream 344731 2400470 ~ 2400684 (+) True G325271
TU385672 lncRNA downstream 512240 2567979 ~ 2569739 (+) True G325435
TU385717 lncRNA downstream 588302 2644041 ~ 2647583 (+) True G325462
XM_026923877.2 mRNA upstream 2363 2014611 ~ 2019052 (+) True rbm8a
XM_026924081.2 mRNA upstream 78125 1925582 ~ 1943290 (+) True paqr6
XM_034298254.1 mRNA upstream 101705 1899626 ~ 1919710 (+) True smg5
XM_026924189.2 mRNA upstream 125458 1846686 ~ 1895957 (+) True syngap1b
XM_034298164.1 mRNA downstream 3801 2059540 ~ 2091481 (+) True mtmr11
XM_026924609.2 mRNA downstream 13236 2068975 ~ 2091481 (+) False mtmr11
XM_026924599.2 mRNA downstream 49049 2104788 ~ 2139998 (+) True sv2a
XM_026924678.2 mRNA downstream 86453 2142192 ~ 2144525 (+) True bola1
XM_026924812.2 mRNA downstream 112979 2168718 ~ 2183436 (+) True nr2f5
TU384187 other upstream 857801 1118268 ~ 1163614 (+) True G324258
XR_004576993.1 other upstream 1011192 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 1214887 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 1272940 745673 ~ 748475 (+) True G324206
TU384064 other upstream 1411406 607612 ~ 610009 (+) False G324161
TU385279 other downstream 86767 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 154483 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 154483 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 509961 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 1955671 4011410 ~ 4013538 (+) False hamp

Expression Profile